def testGetMetadata(self):
"""Make sure that we can retrieve metadata, even before createMutations has been called"""
ic = MafliteInputMutationCreator("testdata/maflite/tiny_maflite.maf.txt")
gtKeys = {'build', 'chr', 'start', 'end', 'ref_allele', 'alt_allele', 'tumor_barcode', 'normal_barcode',
'tumor_f', 'init_t_lod', 't_lod_fstar', 't_alt_count', 't_ref_count', 'judgement'}
md = ic.getMetadata()
ks = set(md.keys())
diff = gtKeys.symmetric_difference(ks)
self.assertTrue(len(diff) == 0, "Missing keys that should have been seen in the metadata: " + str(diff))
def testGetMetadata(self):
"""Make sure that we can retrieve metadata, even before createMutations has been called"""
ic = MafliteInputMutationCreator(
"testdata/maflite/tiny_maflite.maf.txt")
gtKeys = {
'build', 'chr', 'start', 'end', 'ref_allele', 'alt_allele',
'tumor_barcode', 'normal_barcode', 'tumor_f', 'init_t_lod',
't_lod_fstar', 't_alt_count', 't_ref_count', 'judgement'
}
md = ic.getMetadata()
ks = set(md.keys())
diff = gtKeys.symmetric_difference(ks)
self.assertTrue(
len(diff) == 0,
"Missing keys that should have been seen in the metadata: " +
str(diff))
