Python write_alignmentset_chunks_to_file Examples

Programming Language: Python

Namespace/Package Name: pbcoretools.chunking.chunk_utils

Method/Function: write_alignmentset_chunks_to_file

Examples at hotexamples.com: 3

Python write_alignmentset_chunks_to_file - 3 examples found. These are the top rated real world Python examples of pbcoretools.chunking.chunk_utils.write_alignmentset_chunks_to_file extracted from open source projects. You can rate examples to help us improve the quality of examples.

Example #1

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def _args_run_chunk_alignmentset(args):
    return CU.write_alignmentset_chunks_to_file(args.chunk_report_json,
                                                args.alignmentset, args.fasta,
                                                args.max_total_chunks,
                                                args.output_dir,
                                                "chunk_alignmentset",
                                                FileTypes.DS_ALIGN.ext)

Example #2

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File: chunker.py Project: Debian/pbcoretools

def _args_run_chunk_alignmentset(args):
    return CU.write_alignmentset_chunks_to_file(args.chunk_report_json,
                                                args.alignmentset,
                                                args.fasta,
                                                args.max_total_chunks,
                                                args.output_dir,
                                                "chunk_alignmentset",
                                                FileTypes.DS_ALIGN.ext)

Example #3

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File: scatter_alignments_reference.py Project: pezmaster31/pbcoretools

def run_main(ds_xml, reference_set_xml, output_json, max_nchunks, output_dir):
    CU.write_alignmentset_chunks_to_file(output_json, ds_xml,
                                         reference_set_xml, max_nchunks,
                                         output_dir, "chunk_alignmentset",
                                         FileTypes.DS_ALIGN.ext)
    return 0