Python run_to_report Examples

Example #1

 def test_basic(self):
     report = run_to_report(self.subreads, self.barcodes,
                            subreads=False)
     d = report.to_dict()
     self.assertIsNotNone(d)
     log.info(pformat(d))
     log.info(str(report.tables[0]))

Example #2

File: test_pbreports_report_barcode.py Project: tkerelska/pbreports

 def test_basic(self):
     report = run_to_report(self.bas_h5_fofn, self.barcode_h5_fofn,
                            subreads=True)
     d = report.to_dict()
     self.assertIsNotNone(d)
     log.info(pformat(d))
     log.info(str(report.tables[0]))

Example #3

 def test_basic(self):
     report = run_to_report(self.subreads, self.barcodes, subreads=True)
     d = report.to_dict()
     self.assertIsNotNone(d)
     self.assertEqual(report.tables[0].columns[0].values, ['0--0', '2--2'])
     self.assertEqual(report.tables[0].columns[1].values, [1, 1])
     self.assertEqual(report.tables[0].columns[2].values, [1436, 204])