def test_tohdf5():
f = NamedTemporaryFile()
# set up a new hdf5 table to work with
h5file = tables.open_file(f.name, mode="w", title="Test file")
h5file.create_group('/', 'testgroup', 'Test Group')
h5file.create_table('/testgroup', 'testtable', FooBar, 'Test Table')
h5file.flush()
h5file.close()
# load some data via tohdf5
table1 = (('foo', 'bar'), (1, b'asdfgh'), (2, b'qwerty'), (3,
b'zxcvbn'))
tohdf5(table1, f.name, '/testgroup', 'testtable')
ieq(table1, fromhdf5(f.name, '/testgroup', 'testtable'))
tohdf5(table1, f.name, '/testgroup/testtable')
ieq(table1, fromhdf5(f.name, '/testgroup/testtable'))
h5file = tables.open_file(f.name, mode="a")
tohdf5(table1, h5file, '/testgroup/testtable')
ieq(table1, fromhdf5(h5file, '/testgroup/testtable'))
h5table = h5file.get_node('/testgroup/testtable')
tohdf5(table1, h5table)
ieq(table1, fromhdf5(h5table))
# clean up
h5file.close()
def test_tohdf5_create():
table1 = (('foo', 'bar'), (1, b'asdfgh'), (2, b'qwerty'), (3,
b'zxcvbn'))
f = NamedTemporaryFile()
# test creation with defined datatype
tohdf5(table1,
f.name,
'/testgroup',
'testtable',
create=True,
drop=True,
description=FooBar,
createparents=True)
ieq(table1, fromhdf5(f.name, '/testgroup', 'testtable'))
# test dynamically determined datatype
tohdf5(table1,
f.name,
'/testgroup',
'testtable2',
create=True,
drop=True,
createparents=True)
ieq(table1, fromhdf5(f.name, '/testgroup', 'testtable2'))
def test_tohdf5():
f = NamedTemporaryFile()
# set up a new hdf5 table to work with
h5file = tables.open_file(f.name, mode="w", title="Test file")
h5file.create_group('/', 'testgroup', 'Test Group')
h5file.create_table('/testgroup', 'testtable', FooBar, 'Test Table')
h5file.flush()
h5file.close()
# load some data via tohdf5
table1 = (('foo', 'bar'),
(1, b'asdfgh'),
(2, b'qwerty'),
(3, b'zxcvbn'))
tohdf5(table1, f.name, '/testgroup', 'testtable')
ieq(table1, fromhdf5(f.name, '/testgroup', 'testtable'))
tohdf5(table1, f.name, '/testgroup/testtable')
ieq(table1, fromhdf5(f.name, '/testgroup/testtable'))
h5file = tables.open_file(f.name, mode="a")
tohdf5(table1, h5file, '/testgroup/testtable')
ieq(table1, fromhdf5(h5file, '/testgroup/testtable'))
h5table = h5file.get_node('/testgroup/testtable')
tohdf5(table1, h5table)
ieq(table1, fromhdf5(h5table))
# clean up
h5file.close()
def test_fromhdf5():
f = NamedTemporaryFile()
# set up a new hdf5 table to work with
h5file = tables.open_file(f.name, mode='w', title='Test file')
h5file.create_group('/', 'testgroup', 'Test Group')
h5table = h5file.create_table('/testgroup', 'testtable', FooBar,
'Test Table')
# load some data into the table
table1 = (('foo', 'bar'),
(1, b'asdfgh'),
(2, b'qwerty'),
(3, b'zxcvbn'))
for row in table1[1:]:
for i, fld in enumerate(table1[0]):
h5table.row[fld] = row[i]
h5table.row.append()
h5file.flush()
h5file.close()
# verify we can get the data back out
table2a = fromhdf5(f.name, '/testgroup', 'testtable')
ieq(table1, table2a)
ieq(table1, table2a)
# verify we can get the data back out
table2b = fromhdf5(f.name, '/testgroup/testtable')
ieq(table1, table2b)
ieq(table1, table2b)
# verify using an existing tables.File object
h5file = tables.open_file(f.name)
table3 = fromhdf5(h5file, '/testgroup/testtable')
ieq(table1, table3)
# verify using an existing tables.Table object
h5tbl = h5file.get_node('/testgroup/testtable')
table4 = fromhdf5(h5tbl)
ieq(table1, table4)
# verify using a condition to filter data
table5 = fromhdf5(h5tbl, condition="(foo < 3)")
ieq(table1[:3], table5)
# clean up
h5file.close()
def test_fromhdf5():
f = NamedTemporaryFile()
# set up a new hdf5 table to work with
h5file = tables.open_file(f.name, mode='w', title='Test file')
h5file.create_group('/', 'testgroup', 'Test Group')
h5table = h5file.create_table('/testgroup', 'testtable', FooBar,
'Test Table')
# load some data into the table
table1 = (('foo', 'bar'),
(1, b'asdfgh'),
(2, b'qwerty'),
(3, b'zxcvbn'))
for row in table1[1:]:
for i, fld in enumerate(table1[0]):
h5table.row[fld] = row[i]
h5table.row.append()
h5file.flush()
h5file.close()
# verify we can get the data back out
table2a = fromhdf5(f.name, '/testgroup', 'testtable')
ieq(table1, table2a)
ieq(table1, table2a)
# verify we can get the data back out
table2b = fromhdf5(f.name, '/testgroup/testtable')
ieq(table1, table2b)
ieq(table1, table2b)
# verify using an existing tables.File object
h5file = tables.open_file(f.name)
table3 = fromhdf5(h5file, '/testgroup/testtable')
ieq(table1, table3)
# verify using an existing tables.Table object
h5tbl = h5file.get_node('/testgroup/testtable')
table4 = fromhdf5(h5tbl)
ieq(table1, table4)
# verify using a condition to filter data
table5 = fromhdf5(h5tbl, condition="(foo < 3)")
ieq(table1[:3], table5)
# clean up
h5file.close()
def test_tohdf5_create():
table1 = (('foo', 'bar'),
(1, b'asdfgh'),
(2, b'qwerty'),
(3, b'zxcvbn'))
f = NamedTemporaryFile()
# test creation with defined datatype
tohdf5(table1, f.name, '/testgroup', 'testtable', create=True,
drop=True, description=FooBar, createparents=True)
ieq(table1, fromhdf5(f.name, '/testgroup', 'testtable'))
# test dynamically determined datatype
tohdf5(table1, f.name, '/testgroup', 'testtable2', create=True,
drop=True, createparents=True)
ieq(table1, fromhdf5(f.name, '/testgroup', 'testtable2'))
def test_appendhdf5():
f = NamedTemporaryFile()
# set up a new hdf5 table to work with
h5file = tables.open_file(f.name, mode="w", title="Test file")
h5file.create_group('/', 'testgroup', 'Test Group')
h5file.create_table('/testgroup', 'testtable', FooBar, 'Test Table')
h5file.flush()
h5file.close()
# load some initial data via tohdf5()
table1 = (('foo', 'bar'), (1, b'asdfgh'), (2, b'qwerty'), (3,
b'zxcvbn'))
tohdf5(table1, f.name, '/testgroup', 'testtable')
ieq(table1, fromhdf5(f.name, '/testgroup', 'testtable'))
# append some more data
appendhdf5(table1, f.name, '/testgroup', 'testtable')
ieq(chain(table1, table1[1:]),
fromhdf5(f.name, '/testgroup', 'testtable'))
def test_appendhdf5():
f = NamedTemporaryFile()
# set up a new hdf5 table to work with
h5file = tables.open_file(f.name, mode="w", title="Test file")
h5file.create_group('/', 'testgroup', 'Test Group')
h5file.create_table('/testgroup', 'testtable', FooBar, 'Test Table')
h5file.flush()
h5file.close()
# load some initial data via tohdf5()
table1 = (('foo', 'bar'),
(1, b'asdfgh'),
(2, b'qwerty'),
(3, b'zxcvbn'))
tohdf5(table1, f.name, '/testgroup', 'testtable')
ieq(table1, fromhdf5(f.name, '/testgroup', 'testtable'))
# append some more data
appendhdf5(table1, f.name, '/testgroup', 'testtable')
ieq(chain(table1, table1[1:]), fromhdf5(f.name, '/testgroup',
'testtable'))
