def test_duplicate_data_fail1(self):
"""Test the failure of the model-free duplicate_data() method when the structures are not consistent."""
# Read a model-free results file.
results.read(file='final_results_trunc_1.3_v1',
dir=status.install_path + sep + 'test_suite' + sep +
'shared_data' + sep + 'model_free' + sep + 'OMP')
# Load a structure.
structure.main.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=status.install_path + sep + 'test_suite' +
sep + 'shared_data' + sep + 'structures',
read_model=1)
# Create a new model-free data pipe.
ds.add(pipe_name='new', pipe_type='mf')
# Load the structure for the second pipe.
structure.main.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=status.install_path + sep + 'test_suite' +
sep + 'shared_data' + sep + 'structures',
read_model=1)
# Modify the structure.
dp = pipes.get_pipe('new')
dp.structure.structural_data[0].mol[0].file_name = 'test'
# Duplicate the data and catch the error.
self.assertRaises(RelaxError,
self.inst.duplicate_data,
'orig',
'new',
model_info=0)
def test_duplicate_data2(self):
"""Test the model-free duplicate_data() method."""
# Read a model-free results file.
results.read(file='final_results_trunc_1.3_v2', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP')
# Duplicate the data.
self.inst.duplicate_data('orig', 'new', model_info=0)
def test_duplicate_data2(self):
"""Test the model-free duplicate_data() method."""
# Read a model-free results file.
results.read(file='final_results_trunc_1.3_v2',
dir=status.install_path + sep + 'test_suite' + sep +
'shared_data' + sep + 'model_free' + sep + 'OMP')
# Duplicate the data.
self.inst.duplicate_data('orig', 'new', model_info=0)
def test_duplicate_data_single_mf_model(self):
"""Test the model-free duplicate_data() method."""
# Read a model-free results file.
results.read(file='final_results_trunc_1.3_v2', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP')
# Load a structure.
structure.main.read_pdb(file='Ap4Aase_res1-12.pdb', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1)
# Duplicate the data, model by model.
self.inst.duplicate_data('orig', 'new', model_info=0)
self.inst.duplicate_data('orig', 'new', model_info=1)
self.inst.duplicate_data('orig', 'new', model_info=2)
self.inst.duplicate_data('orig', 'new', model_info=3)
def test_duplicate_data3(self):
"""Test the model-free duplicate_data() method."""
# Read a model-free results file.
results.read(file='final_results_trunc_1.3_v2', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP')
# Load a structure.
structure.main.read_pdb(file='Ap4Aase_res1-12.pdb', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1)
# Duplicate the data.
self.inst.duplicate_data('orig', 'new', model_info=0)
# Check the original data.
self.assert_(hasattr(pipes.get_pipe('orig'), 'structure'))
# Check the duplication.
self.assert_(hasattr(pipes.get_pipe('new'), 'structure'))
def test_duplicate_data_single_mf_model(self):
"""Test the model-free duplicate_data() method."""
# Read a model-free results file.
results.read(file='final_results_trunc_1.3_v2',
dir=status.install_path + sep + 'test_suite' + sep +
'shared_data' + sep + 'model_free' + sep + 'OMP')
# Load a structure.
structure.main.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=status.install_path + sep + 'test_suite' +
sep + 'shared_data' + sep + 'structures',
read_model=1)
# Duplicate the data, model by model.
self.inst.duplicate_data('orig', 'new', model_info=0)
self.inst.duplicate_data('orig', 'new', model_info=1)
self.inst.duplicate_data('orig', 'new', model_info=2)
self.inst.duplicate_data('orig', 'new', model_info=3)
def test_duplicate_data_fail1(self):
"""Test the failure of the model-free duplicate_data() method when the structures are not consistent."""
# Read a model-free results file.
results.read(file='final_results_trunc_1.3_v1', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'model_free'+sep+'OMP')
# Load a structure.
structure.main.read_pdb(file='Ap4Aase_res1-12.pdb', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1)
# Create a new model-free data pipe.
ds.add(pipe_name='new', pipe_type='mf')
# Load the structure for the second pipe.
structure.main.read_pdb(file='Ap4Aase_res1-12.pdb', dir=status.install_path + sep+'test_suite'+sep+'shared_data'+sep+'structures', read_model=1)
# Modify the structure.
dp = pipes.get_pipe('new')
dp.structure.structural_data[0].mol[0].file_name = 'test'
# Duplicate the data and catch the error.
self.assertRaises(RelaxError, self.inst.duplicate_data, 'orig', 'new', model_info=0)
def test_duplicate_data3(self):
"""Test the model-free duplicate_data() method."""
# Read a model-free results file.
results.read(file='final_results_trunc_1.3_v2',
dir=status.install_path + sep + 'test_suite' + sep +
'shared_data' + sep + 'model_free' + sep + 'OMP')
# Load a structure.
structure.main.read_pdb(file='Ap4Aase_res1-12.pdb',
dir=status.install_path + sep + 'test_suite' +
sep + 'shared_data' + sep + 'structures',
read_model=1)
# Duplicate the data.
self.inst.duplicate_data('orig', 'new', model_info=0)
# Check the original data.
self.assert_(hasattr(pipes.get_pipe('orig'), 'structure'))
# Check the duplication.
self.assert_(hasattr(pipes.get_pipe('new'), 'structure'))
