while parent is not None and parent.time < time:
if parent.parent is not None and parent.parent.time < time:
parent = parent.parent
else:
break
if parent is None:
return hit
else:
return parent
def build_tree(f, args, chrom, pop_sizes):
for line in f:
# Skip over a line, which contains the seed for a simulation run.
line = f.next()
data = eval(line)
for r in range(args.reps):
generate_trees(data[chrom],
args.size1,
args.size2,
pop_sizes,
args.internal)
if __name__ == '__main__':
parser = parse_common_arguments('Construct gene tree.')
parser.add_argument('-i', '--internal',
action = 'store_true',
help = 'output names of internal nodes')
run(parser.parse_args(), build_tree)
def activate(zone_id):
global ACTIVE_ZONE
ACTIVE_ZONE = zone_id
_zone = ZONES[zone_id]
_noise = tcod.noise_new(2)
logging.info('Bringing zone \'%s\' online...' % _zone['name'])
_zone['astar_map'] = pathfinding.setup(_zone['width'], _zone['height'], _zone['solids'])
_zone['los_map'] = mapgen.generate_los_map(_zone['width'], _zone['height'], _zone['solids'])
display.create_surface('tiles', width=_zone['width'], height=_zone['height'])
maps.render_map(_zone['tile_map'], _zone['width'], _zone['height'])
post_processing.start()
events.register_event('logic', post_processing.tick_sun)
_static_lighting = display.create_shader(_zone['width'], _zone['height'], start_offset=1)
_zone['shaders'].append(post_processing.generate_shadow_map(_zone['width'], _zone['height'], _zone['solids'], _zone['trees'], _zone['inside']))
_zone['shaders'].append(post_processing.generate_light_map(_zone['width'], _zone['height'], _zone['solids'], _zone['trees']))
_zone['light_maps']['static_lighting'] = _static_lighting
_zone['shaders'].append(_static_lighting)
_noise = tcod.noise_new(3)
_zoom = 2.0
_zone['fader'] = display.create_shader(_zone['width'], _zone['height'])
_shader = display.create_shader(_zone['width'], _zone['height'])
for y in range(0, _zone['height']):
for x in range(0, _zone['width']):
if (x, y) in _zone['inside']:
_height = .75
else:
_noise_values = [(_zoom * x / _zone['width']),
(_zoom * y / _zone['height'])]
_height = .35 + numbers.clip(tcod.noise_get_turbulence(_noise, _noise_values, tcod.NOISE_SIMPLEX), .35, 1)
_shader[0][y, x] = 1.3 * _height
_shader[1][y, x] = 1.3 * _height
_shader[2][y, x] = 1.1 * _height
_zone['shaders'].append(_shader)
for light in _zone['lights']:
effects.light(light[0], light[1], light[2], r=light[3], g=light[4], b=light[5], light_map='static_lighting')
#if not '--no-fx' in sys.argv:
# post_processing.run(time=8,
# repeat=-1,
# repeat_callback=lambda _: post_processing.post_process_clouds(constants.MAP_VIEW_WIDTH,
# constants.MAP_VIEW_HEIGHT,
# 8,
# _noise,
# _zone['inside']))
post_processing.run(time=0,
repeat=-1,
repeat_callback=lambda _: post_processing.post_process_lights())
#post_processing.run(time=0,
# repeat=-1,
# repeat_callback=lambda _: post_processing.sunlight())
camera.set_limits(0, 0, _zone['width']-constants.MAP_VIEW_WIDTH, _zone['height']-constants.MAP_VIEW_HEIGHT)
logging.info('Zone \'%s\' is online' % _zone['name'])
def activate(zone_id):
global ACTIVE_ZONE
ACTIVE_ZONE = zone_id
_zone = ZONES[zone_id]
_noise = tcod.noise_new(2)
logging.info('Bringing zone \'%s\' online...' % _zone['name'])
_zone['astar_map'] = pathfinding.setup(_zone['width'], _zone['height'],
_zone['solids'])
_zone['los_map'] = mapgen.generate_los_map(_zone['width'], _zone['height'],
_zone['solids'])
display.create_surface('tiles',
width=_zone['width'],
height=_zone['height'])
maps.render_map(_zone['tile_map'], _zone['width'], _zone['height'])
post_processing.start()
events.register_event('logic', post_processing.tick_sun)
_static_lighting = display.create_shader(_zone['width'],
_zone['height'],
start_offset=1)
_zone['shaders'].append(
post_processing.generate_shadow_map(_zone['width'], _zone['height'],
_zone['solids'], _zone['trees'],
_zone['inside']))
_zone['shaders'].append(
post_processing.generate_light_map(_zone['width'], _zone['height'],
_zone['solids'], _zone['trees']))
_zone['light_maps']['static_lighting'] = _static_lighting
_zone['shaders'].append(_static_lighting)
_noise = tcod.noise_new(3)
_zoom = 2.0
_zone['fader'] = display.create_shader(_zone['width'], _zone['height'])
_shader = display.create_shader(_zone['width'], _zone['height'])
for y in range(0, _zone['height']):
for x in range(0, _zone['width']):
if (x, y) in _zone['inside']:
_height = .75
else:
_noise_values = [(_zoom * x / _zone['width']),
(_zoom * y / _zone['height'])]
_height = .35 + numbers.clip(
tcod.noise_get_turbulence(_noise, _noise_values,
tcod.NOISE_SIMPLEX), .35, 1)
_shader[0][y, x] = 1.3 * _height
_shader[1][y, x] = 1.3 * _height
_shader[2][y, x] = 1.1 * _height
_zone['shaders'].append(_shader)
for light in _zone['lights']:
effects.light(light[0],
light[1],
light[2],
r=light[3],
g=light[4],
b=light[5],
light_map='static_lighting')
#if not '--no-fx' in sys.argv:
# post_processing.run(time=8,
# repeat=-1,
# repeat_callback=lambda _: post_processing.post_process_clouds(constants.MAP_VIEW_WIDTH,
# constants.MAP_VIEW_HEIGHT,
# 8,
# _noise,
# _zone['inside']))
post_processing.run(
time=0,
repeat=-1,
repeat_callback=lambda _: post_processing.post_process_lights())
#post_processing.run(time=0,
# repeat=-1,
# repeat_callback=lambda _: post_processing.sunlight())
camera.set_limits(0, 0, _zone['width'] - constants.MAP_VIEW_WIDTH,
_zone['height'] - constants.MAP_VIEW_HEIGHT)
logging.info('Zone \'%s\' is online' % _zone['name'])
if coal_gen.count(i) == 2][0]
unchanged = [0, 0]
for s1 in coal_gen[:size1]:
if s1 < pop_size / 2 and s1 != merged:
unchanged[0] += 1
for s2 in coal_gen[size1:]:
if s2 < pop_size / 2 and s2 != merged:
unchanged[1] += 1
merged1 = coal_gen.index(merged)
merged2 = coal_gen.index(merged, merged1 + 1)
if merged1 < size1 and merged2 < size1:
ctype = 0
elif merged1 < size1:
ctype = 1
else:
ctype = 2
if merged < pop_size / 2:
deme = 1
else:
deme = 2
print('{}, {}, {}, {}, {}'.format(
time, unchanged[0], unchanged[1], deme, ctype))
return True
if __name__ == '__main__':
run(parse_common_arguments('Summarize coalescence time and exit states').parse_args(), get_exit_states)
