def prepare(root,config):
enable_ahmed = tools.to_bool(tools.setDefaultConfigOption(config,'AHMED','enable_ahmed','false'))
if enable_ahmed:
if not config.has_option('AHMED','file_name'):
raise Exception('Need to give full path of tar.gz archived file with AHMED 1.0 release')
ahmed_fname=config.get('AHMED','file_name')
ahmed_fname=tools.normalizePath(config,ahmed_fname)
config.set('AHMED','with_ahmed','ON')
prefix=config.get('Main','prefix')
dep_build_dir = config.get('Main','dependency_build_dir')
arch = config.get('Main','architecture')
if arch == 'ia32':
config.set('AHMED','enable64','OFF')
else:
config.set('AHMED','enable64','ON')
ahmed_full_dir=dep_build_dir+"/ahmed"
tools.checkDeleteDirectory(ahmed_full_dir)
if sys.platform.startswith('darwin'):
config.set('AHMED','lib',prefix+"/bempp/lib/libAHMED.dylib")
elif sys.platform.startswith('linux'):
config.set('AHMED','lib',prefix+"/bempp/lib/libAHMED.so")
else:
raise Exception("Platform not supported")
config.set('AHMED','include_dir',prefix+"/bempp/include/AHMED")
if not os.path.isfile(ahmed_fname):
raise Exception("File '"+ahmed_fname+"' does not exist")
print "Extracting AHMED"
tools.extract_file(ahmed_fname,dep_build_dir)
os.rename(dep_build_dir+"/AHMED_1.0",ahmed_full_dir)
shutil.copy(root+"/installer/build_scripts/posix/ahmed_build.sh",ahmed_full_dir+"/ahmed_build.sh")
print "Patching AHMED"
cwd=os.getcwd()
os.chdir(ahmed_full_dir)
for s in ("ahmed_cmake.patch",
"ahmed_addGeHGeH_single_precision.patch",
"ahmed_changelog_H.h.patch",
"ahmed_pass_clusters_to_aca_matgen_apprx.h.patch",
"ahmed_generic_aca_apprx.h.patch",
"ahmed_check_error_apprx.h.patch",
"ahmed_bbx_apprx.h.patch",
"ahmed_pass_clusters_to_aca_matgen_ACA.h.patch",
"ahmed_frobenius_norm_ACA.h.patch",
"ahmed_zero_pu_pv_ACA.h.patch",
"ahmed_retry_if_zero_and_orig_cross_ACA.h.patch",
"ahmed_changelog_ACA.h.patch",
"ahmed_permuted_indices_bemcluster.h.patch",
"ahmed_changelog_bemcluster.h.patch",
"ahmed_omp.patch",
"ahmed_basmod_h.patch",
"ahmed_mblock.patch"):
py_patch.fromfile(root+"/installer/patches/"+s).apply()
shutil.copy(root+"/installer/patches/ahmed_bbx_bbxbemcluster.h",
"./Include/bbxbemcluster.h")
shutil.copy(root+"/installer/patches/ahmed_bbx_bbxbemblcluster.h",
"./Include/bbxbemblcluster.h")
os.chdir(cwd)
tools.setCompilerOptions(config,'AHMED')
else:
config.set('AHMED','with_ahmed','OFF')
def get_mkl_dirs_and_libs_redistributable(config, lib_dir, extension):
mkl_tarball = config.get('MKL','tarball')
mkl_tarball = tools.normalizePath(config,mkl_tarball)
print 'Extracting MKL redistributables'
tools.extract_file(mkl_tarball,lib_dir)
mkl_dirs = [lib_dir]
mkl_libs = config.get('MKL','lib').split(";")
mkl_libs = [s.strip() for s in mkl_libs]
return mkl_dirs,mkl_libs
def get_mkl_dirs_and_libs_redistributable(config, lib_dir, extension):
mkl_tarball = config.get('MKL', 'tarball')
mkl_tarball = tools.normalizePath(config, mkl_tarball)
print 'Extracting MKL redistributables'
tools.extract_file(mkl_tarball, lib_dir)
mkl_dirs = [lib_dir]
mkl_libs = config.get('MKL', 'lib').split(";")
mkl_libs = [s.strip() for s in mkl_libs]
return mkl_dirs, mkl_libs
def prepare(root, config):
enable_ahmed = tools.to_bool(
tools.setDefaultConfigOption(config, 'AHMED', 'enable_ahmed', 'false'))
if enable_ahmed:
if not config.has_option('AHMED', 'file_name'):
raise Exception(
'Need to give full path of tar.gz archived file with AHMED 1.0 release'
)
ahmed_fname = config.get('AHMED', 'file_name')
ahmed_fname = tools.normalizePath(config, ahmed_fname)
config.set('AHMED', 'with_ahmed', 'ON')
prefix = config.get('Main', 'prefix')
dep_build_dir = config.get('Main', 'dependency_build_dir')
arch = config.get('Main', 'architecture')
if arch == 'ia32':
config.set('AHMED', 'enable64', 'OFF')
else:
config.set('AHMED', 'enable64', 'ON')
ahmed_full_dir = dep_build_dir + "/ahmed"
tools.checkDeleteDirectory(ahmed_full_dir)
if sys.platform.startswith('darwin'):
config.set('AHMED', 'lib', prefix + "/bempp/lib/libAHMED.dylib")
elif sys.platform.startswith('linux'):
config.set('AHMED', 'lib', prefix + "/bempp/lib/libAHMED.so")
else:
raise Exception("Platform not supported")
config.set('AHMED', 'include_dir', prefix + "/bempp/include/AHMED")
if not os.path.isfile(ahmed_fname):
raise Exception("File '" + ahmed_fname + "' does not exist")
print "Extracting AHMED"
tools.extract_file(ahmed_fname, dep_build_dir)
os.rename(dep_build_dir + "/AHMED_1.0", ahmed_full_dir)
shutil.copy(root + "/installer/build_scripts/posix/ahmed_build.sh",
ahmed_full_dir + "/ahmed_build.sh")
print "Patching AHMED"
cwd = os.getcwd()
os.chdir(ahmed_full_dir)
for s in ("ahmed_cmake.patch",
"ahmed_addGeHGeH_single_precision.patch",
"ahmed_pass_clusters_to_aca_matgen_apprx.h.patch",
"ahmed_generic_aca_apprx.h.patch",
"ahmed_check_error_apprx.h.patch",
"ahmed_pass_clusters_to_aca_matgen_ACA.h.patch",
"ahmed_frobenius_norm_ACA.h.patch",
"ahmed_zero_pu_pv_ACA.h.patch",
"ahmed_retry_if_zero_and_orig_cross_ACA.h.patch",
"ahmed_permuted_indices_bemcluster.h.patch"):
py_patch.fromfile(root + "/installer/patches/" + s).apply()
os.chdir(cwd)
tools.setCompilerOptions(config, 'AHMED')
else:
config.set('AHMED', 'with_ahmed', 'OFF')
def prepare(root,config):
# Test whether the main options are present
if not config.has_option('Main','prefix'): raise Exception('prefix not defined')
setDefaultConfigOption(config,'Main','cc','gcc')
setDefaultConfigOption(config,'Main','cxx','g++')
setDefaultConfigOption(config,'Main','architecture','intel64')
setDefaultConfigOption(config,'Main','flags',"")
setDefaultConfigOption(config,'Main','libs',"")
setDefaultConfigOption(config,'Main','cflags',"")
setDefaultConfigOption(config,'Main','cxxflags',"")
setDefaultConfigOption(config,'Main','root_dir',root)
setDefaultConfigOption(config,'Main','build_jobs',"1")
# Retrieve path to configuration file
optfile = config.get('Main','optfile')
# Retrieve build directory
setDefaultConfigOption(config,'Main','build_dir',root+'/build')
build_dir = normalizePath(config, config.get('Main','build_dir'))
# Set build directories for BEM++ and its dependencies
config.set('Main','build_dir',build_dir)
config.set('Bempp','build_dir',build_dir+'/bempp')
config.set('Main','dependency_build_dir',build_dir+'/contrib')
# Set
config.set('Main','dependency_download_dir',root+'/installer/files')
# Set default MKL/libs option
setDefaultConfigOption(config,'MKL','lib',"-lmkl_rt")
# Set default MPI options
setDefaultConfigOption(config,'MPI','enable_mpi','false')
setDefaultConfigOption(config,'MPI','mpi_cxx_libs','')
setDefaultConfigOption(config,'MPI','mpi_include_dir','')
enable_mpi = to_bool(config.get('MPI','enable_mpi'))
if enable_mpi:
mpi_include_dir = config.get('MPI','mpi_include_dir')
cflags = config.get('Main','cflags')
cxxflags = config.get('Main','cxxflags')
config.set('Main','with_mpi','ON')
if len(mpi_include_dir)>0:
config.set('Main','cflags',cflags+" -I"+mpi_include_dir)
config.set('Main','cxxflags',cxxflags+" -I"+mpi_include_dir)
else:
config.set('MPI','with_mpi','OFF')
# Set empty BLAS/Lapack options if none exist
setDefaultConfigOption(config,'BLAS','lib',"")
setDefaultConfigOption(config,'LAPACK','lib',"")
# Add the correct architecture parameters
cflags = config.get('Main','cflags')
cxxflags = config.get('Main','cxxflags')
arch = config.get('Main','architecture')
if not arch in ['ia32','ia64','intel64']:
raise Exception("Architecture '"+arch+"' is not supported. "
"Supported architectures: ia32, ia64, intel64.")
if sys.platform.startswith('darwin'):
if arch=='intel64':
param = '-arch x86_64'
else:
param = '-arch i386'
config.set('Main','cflags',cflags+" "+param)
config.set('Main','cxxflags',cxxflags+" "+param)
setDefaultConfigOption(config,'Main','optflags','-O3 -march=core2')
elif sys.platform.startswith('linux'):
if arch=='intel64' or arch=='ia64':
param = '-m64'
else:
param = '-m32'
config.set('Main','cflags',cflags+" "+param)
config.set('Main','cxxflags',cxxflags+" "+param)
setDefaultConfigOption(config,'Main','optflags','-O3 -march=native')
else:
raise Exception("Platform '"+sys.platform+"' is not supported")
# Add the correct Python options
import numpy
(py_exe,py_lib,py_include) = pythonInfo(config)
setDefaultConfigOption(config,'Python','exe',py_exe)
setDefaultConfigOption(config,'Python','lib',py_lib)
setDefaultConfigOption(config,'Python','include_dir',py_include)
setDefaultConfigOption(config,'Python','numpy_include_dir',numpy.get_include())
# Check for OS X Mavericks
have_mavericks = False
plat = platform.system()
if plat == 'Darwin':
have_mavericks = True if platform.mac_ver()[0]=='10.9' else False
# Add the CMake configuration
if config.has_option('CMake','exe'):
cmake_executable = tools.which(config.get('CMake','exe'))
if cmake_executable is None:
raise Exception("CMake command specified in [CMake] section not found.")
tools.setDefaultConfigOption(config,'CMake','exe',cmake_executable,overwrite=True)
else:
# CMake must have been or will be downloaded by the bootstrap mechanism
cmake_executable = prefix+'/bempp/bin/cmake'
if os.path.isfile(cmake_executable):
tools.setDefaultConfigOption(config,'CMake','exe',cmake_executable,overwrite=True)
", ".join(library_names) + " (particular BEM++ dependencies)")
(options,args) = parser.parse_args()
root=module_path()
config=ConfigParser()
if len(args) != 1:
parser.error("Configuration file not specified")
optfile = args[0]
optfile_generated = root+"/"+os.path.basename(optfile)+".generated"
try:
optfileobj = open(optfile)
config.readfp(optfileobj)
optfileobj.close()
optfile_full = os.path.abspath(os.path.expanduser(optfile))
tools.setDefaultConfigOption(config,'Main','optfile',
optfile_full,overwrite=True)
prefix = normalizePath(config, config.get('Main','prefix'))
tools.setDefaultConfigOption(config,'Main','prefix',prefix,
overwrite=True)
except Exception, e:
print ("Parsing of configuration file '" + optfile +
"' failed with error message:\n" + str(e))
sys.exit(1)
try:
prepare(root,config)
if options.resume_update:
# Must be the first "if": the intention is that if this option
# is present, the update procedure is resumed and all other work
# modes are ignored.
config = ConfigParser()
if not os.path.exists(optfile_generated):
print ("You must first successfully run bempp_setup.py "
def prepare(root, config):
# Test whether the main options are present
if not config.has_option('Main', 'prefix'):
raise Exception('prefix not defined')
setDefaultConfigOption(config, 'Main', 'cc', 'gcc')
setDefaultConfigOption(config, 'Main', 'cxx', 'g++')
setDefaultConfigOption(config, 'Main', 'architecture', 'intel64')
setDefaultConfigOption(config, 'Main', 'flags', "")
setDefaultConfigOption(config, 'Main', 'libs', "")
setDefaultConfigOption(config, 'Main', 'cflags', "")
setDefaultConfigOption(config, 'Main', 'cxxflags', "")
setDefaultConfigOption(config, 'Main', 'root_dir', root)
setDefaultConfigOption(config, 'Main', 'build_jobs', "1")
# Retrieve path to configuration file
optfile = config.get('Main', 'optfile')
# Retrieve build directory
setDefaultConfigOption(config, 'Main', 'build_dir', root + '/build')
build_dir = normalizePath(config, config.get('Main', 'build_dir'))
# Set build directories for BEM++ and its dependencies
config.set('Main', 'build_dir', build_dir)
config.set('Bempp', 'build_dir', build_dir + '/bempp')
config.set('Main', 'dependency_build_dir', build_dir + '/contrib')
# Set
config.set('Main', 'dependency_download_dir', root + '/installer/files')
# Set default MKL/libs option
setDefaultConfigOption(config, 'MKL', 'lib', "-lmkl_rt")
# Set default MPI options
setDefaultConfigOption(config, 'MPI', 'enable_mpi', 'false')
setDefaultConfigOption(config, 'MPI', 'mpi_cxx_libs', '')
setDefaultConfigOption(config, 'MPI', 'mpi_include_dir', '')
enable_mpi = to_bool(config.get('MPI', 'enable_mpi'))
if enable_mpi:
mpi_include_dir = config.get('MPI', 'mpi_include_dir')
cflags = config.get('Main', 'cflags')
cxxflags = config.get('Main', 'cxxflags')
config.set('Main', 'with_mpi', 'ON')
config.set('Main', 'cflags', cflags + " -I" + mpi_include_dir)
config.set('Main', 'cxxflags', cxxflags + " -I" + mpi_include_dir)
else:
config.set('MPI', 'with_mpi', 'OFF')
# Set empty BLAS/Lapack options if none exist
setDefaultConfigOption(config, 'BLAS', 'lib', "")
setDefaultConfigOption(config, 'LAPACK', 'lib', "")
# Add the correct architecture parameters
cflags = config.get('Main', 'cflags')
cxxflags = config.get('Main', 'cxxflags')
arch = config.get('Main', 'architecture')
if not arch in ['ia32', 'ia64', 'intel64']:
raise Exception("Architecture '" + arch + "' is not supported. "
"Supported architectures: ia32, ia64, intel64.")
if sys.platform.startswith('darwin'):
if arch == 'intel64':
param = '-arch x86_64'
else:
param = '-arch i386'
config.set('Main', 'cflags', cflags + " " + param)
config.set('Main', 'cxxflags', cxxflags + " " + param)
setDefaultConfigOption(config, 'Main', 'optflags', '-O3 -march=core2')
elif sys.platform.startswith('linux'):
if arch == 'intel64' or arch == 'ia64':
param = '-m64'
else:
param = '-m32'
config.set('Main', 'cflags', cflags + " " + param)
config.set('Main', 'cxxflags', cxxflags + " " + param)
setDefaultConfigOption(config, 'Main', 'optflags', '-O3 -march=native')
else:
raise Exception("Platform '" + sys.platform + "' is not supported")
# Add the correct Python options
import numpy
(py_exe, py_lib, py_include) = pythonInfo(config)
setDefaultConfigOption(config, 'Python', 'exe', py_exe)
setDefaultConfigOption(config, 'Python', 'lib', py_lib)
setDefaultConfigOption(config, 'Python', 'include_dir', py_include)
setDefaultConfigOption(config, 'Python', 'numpy_include_dir',
numpy.get_include())
# Add the CMake configuration
prefix = config.get('Main', 'prefix')
setDefaultConfigOption(config,
"CMake",
"exe",
prefix + "/bempp/bin/cmake",
overwrite=True)
config = ConfigParser()
if len(args) != 1:
parser.error("Configuration file not specified")
optfile = args[0]
optfile_generated = root + "/" + os.path.basename(optfile) + ".generated"
try:
optfileobj = open(optfile)
config.readfp(optfileobj)
optfileobj.close()
optfile_full = os.path.abspath(os.path.expanduser(optfile))
tools.setDefaultConfigOption(config,
'Main',
'optfile',
optfile_full,
overwrite=True)
prefix = normalizePath(config, config.get('Main', 'prefix'))
tools.setDefaultConfigOption(config,
'Main',
'prefix',
prefix,
overwrite=True)
except Exception, e:
print("Parsing of configuration file '" + optfile +
"' failed with error message:\n" + str(e))
sys.exit(1)
try:
prepare(root, config)
if options.resume_update:
# Must be the first "if": the intention is that if this option
# is present, the update procedure is resumed and all other work
# modes are ignored.
def prepare(root,config):
# Test whether the main options are present
if not config.has_option('Main','prefix'): raise Exception('prefix not defined')
setDefaultConfigOption(config,'Main','cc','gcc')
setDefaultConfigOption(config,'Main','cxx','g++')
setDefaultConfigOption(config,'Main','architecture','intel64')
setDefaultConfigOption(config,'Main','flags',"")
setDefaultConfigOption(config,'Main','libs',"")
setDefaultConfigOption(config,'Main','cflags',"")
setDefaultConfigOption(config,'Main','cxxflags',"")
setDefaultConfigOption(config,'Main','root_dir',root)
setDefaultConfigOption(config,'Main','build_jobs',"1")
# Retrieve path to configuration file
optfile = config.get('Main','optfile')
# Retrieve build directory
setDefaultConfigOption(config,'Main','build_dir',root+'/build')
build_dir = normalizePath(config, config.get('Main','build_dir'))
# Set build directories for BEM++ and its dependencies
config.set('Main','build_dir',build_dir)
config.set('Bempp','build_dir',build_dir+'/bempp')
config.set('Main','dependency_build_dir',build_dir+'/contrib')
# Set
config.set('Main','dependency_download_dir',root+'/installer/files')
# Set default MKL/libs option
setDefaultConfigOption(config,'MKL','lib',"-lmkl_rt")
# Set default MPI options
setDefaultConfigOption(config,'MPI','enable_mpi','false')
setDefaultConfigOption(config,'MPI','mpi_cxx_libs','')
setDefaultConfigOption(config,'MPI','mpi_include_dir','')
enable_mpi = to_bool(config.get('MPI','enable_mpi'))
if enable_mpi:
mpi_include_dir = config.get('MPI','mpi_include_dir')
cflags = config.get('Main','cflags')
cxxflags = config.get('Main','cxxflags')
config.set('Main','with_mpi','ON')
if len(mpi_include_dir)>0:
config.set('Main','cflags',cflags+" -I"+mpi_include_dir)
config.set('Main','cxxflags',cxxflags+" -I"+mpi_include_dir)
else:
config.set('MPI','with_mpi','OFF')
# Set empty BLAS/Lapack options if none exist
setDefaultConfigOption(config,'BLAS','lib',"")
setDefaultConfigOption(config,'LAPACK','lib',"")
# Add the correct architecture parameters
cflags = config.get('Main','cflags')
cxxflags = config.get('Main','cxxflags')
arch = config.get('Main','architecture')
if not arch in ['ia32','ia64','intel64']:
raise Exception("Architecture '"+arch+"' is not supported. "
"Supported architectures: ia32, ia64, intel64.")
if sys.platform.startswith('darwin'):
if arch=='intel64':
param = '-arch x86_64'
else:
param = '-arch i386'
config.set('Main','cflags',cflags+" "+param)
config.set('Main','cxxflags',cxxflags+" "+param)
setDefaultConfigOption(config,'Main','optflags','-O3 -march=core2')
elif sys.platform.startswith('linux'):
if arch=='intel64' or arch=='ia64':
param = '-m64'
else:
param = '-m32'
config.set('Main','cflags',cflags+" "+param)
config.set('Main','cxxflags',cxxflags+" "+param)
setDefaultConfigOption(config,'Main','optflags','-O3 -march=native')
else:
raise Exception("Platform '"+sys.platform+"' is not supported")
# Add the correct Python options
import numpy
(py_exe,py_lib,py_include) = pythonInfo(config)
setDefaultConfigOption(config,'Python','exe',py_exe)
setDefaultConfigOption(config,'Python','lib',py_lib)
setDefaultConfigOption(config,'Python','include_dir',py_include)
setDefaultConfigOption(config,'Python','numpy_include_dir',numpy.get_include())
# Add the CMake configuration
prefix = config.get('Main','prefix')
setDefaultConfigOption(config,"CMake","exe",prefix+"/bempp/bin/cmake",overwrite=True)
