def parse(self, header, line, delim='\t'):
params = dict()
if not isinstance(line, list):
line = line.split(delim)
args = [l.strip() for l in line]
script_info = self._load_scripts(header, args)
ln = args[header.index('labnumber')]
if ALIQUOT_REGEX.match(ln):
ln, a = ln.split('-')
# params['aliquot'] = int(a)
params['user_defined_aliquot'] = int(a)
params['labnumber'] = ln
# load strings
self._load_strings(header, args, params)
# load booleans
self._load_booleans(header, args, params)
# load numbers
self._load_numbers(header, args, params)
return script_info, params
def parse(self, header, line, delim='\t'):
params = dict()
if not isinstance(line, list):
line = line.split(delim)
args = map(str.strip, line)
script_info = self._load_scripts(header, args)
ln = args[header.index('labnumber')]
if ALIQUOT_REGEX.match(ln):
ln, a = ln.split('-')
# params['aliquot'] = int(a)
params['user_defined_aliquot'] = int(a)
params['labnumber'] = ln
# load strings
self._load_strings(header, args, params)
# load booleans
self._load_booleans(header, args, params)
# load numbers
self._load_numbers(header, args, params)
return script_info, params
def parse(self, header, line, meta, delim='\t'):
params = dict()
if not isinstance(line, list):
line = line.split(delim)
args = map(str.strip, line)
script_info = self._load_scripts(header, args)
ln = args[header.index('labnumber')]
if ALIQUOT_REGEX.match(ln):
ln, a = ln.split('-')
#params['aliquot'] = int(a)
params['user_defined_aliquot'] = int(a)
params['labnumber'] = ln
attr, rattr = self._get_attr('truncate_condition')
idx = self._get_idx(header, attr)
if idx is not None:
tc = args[idx]
if self._validate_truncate_condition(tc):
params['truncate_condition'] = tc
# load strings
for attr in [
'pattern',
'position',
'comment',
('truncate', 'truncate_condition'),
# ver 1.0
'extract_units',
# ver 2.0
('e_units', 'extract_units')
]:
attr, rattr = self._get_attr(attr)
idx = self._get_idx(header, attr)
if idx:
try:
params[rattr] = args[idx]
except IndexError, e:
pass
