Python _sam_hdr_read Examples

Programming Language: Python

Namespace/Package Name: pyhtslib.bam_internal

Method/Function: _sam_hdr_read

Examples at hotexamples.com: 2

Python _sam_hdr_read - 2 examples found. These are the top rated real world Python examples of pyhtslib.bam_internal._sam_hdr_read extracted from open source projects. You can rate examples to help us improve the quality of examples.

Example #1

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File: bam_fixtures.py Project: alphaneer/pyhtslib

def six_records_sam_header(six_records_sam):
    hts_file = hts_internal._hts_open(
        str(six_records_sam).encode('utf-8'), 'r')
    hdr = bam_internal._sam_hdr_read(hts_file)
    yield hdr
    bam_internal._bam_hdr_destroy(hdr)
    hts_internal._hts_close(hts_file)

Example #2

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File: bam_fixtures.py Project: alphaneer/pyhtslib

def header_only_sam_gz_header(header_only_sam_gz):
    hts_file = hts_internal._hts_open(
        str(header_only_sam_gz).encode('utf-8'), 'r')
    hdr = bam_internal._sam_hdr_read(hts_file)
    yield hdr
    bam_internal._bam_hdr_destroy(hdr)
    hts_internal._hts_close(hts_file)