Example #1
0
    def _visualize(self, obj, **args):

        if isinstance(obj, EmanProtBoxing):
            coords = obj.getCoords()
            if coords:
                XmippViewer._visualize(self, obj.outputCoordinates)

        elif isinstance(obj, EmanProtInitModel):
            obj = obj.outputVolumes
            fn = obj.getFileName()
            labels = 'id enabled comment _filename '
            objCommands = "'%s' '%s' '%s'" % (OBJCMD_CLASSAVG_PROJS,
                                              OBJCMD_PROJS, OBJCMD_INITVOL)

            self._views.append(
                vw.ObjectView(
                    self._project,
                    obj.strId(),
                    fn,
                    viewParams={
                        showj.MODE: showj.MODE_MD,
                        showj.ORDER: labels,
                        showj.VISIBLE: labels,
                        showj.RENDER: '_filename',
                        showj.OBJCMDS: objCommands
                    },
                ))
Example #2
0
 def _visualize(self, obj, **args):
      
     if isinstance(obj, EmanProtBoxing):
         XmippViewer._visualize(self, obj.outputCoordinates)
          
     elif isinstance(obj, EmanProtInitModel):
         XmippViewer._visualize(self, obj.outputVolumes)
Example #3
0
 def _visualize(self, obj, **args):
      
     if isinstance(obj, EmanProtBoxing):
         coords = obj.getCoords()
         if coords:
             XmippViewer._visualize(self, obj.outputCoordinates)
          
     elif isinstance(obj, EmanProtInitModel):
         XmippViewer._visualize(self, obj.outputVolumes)
Example #4
0
 def _visualize(self, obj, **args):
     
     if isinstance(obj, PcaFile):
         self._views.append(self.textView([obj.getFileName()], "PCA file"))
     
     elif isinstance(obj, SpiderProtCustomMask):
         mask = obj.outputMask
         self._visualize(mask)
         # Visualize the whole stack with all filenames
         self._views.append(DataView(mask.getFileName()))
         
     else:
         XmippViewer._visualize(self, obj)
        
     return self._views
Example #5
0
    def _visualize(self, obj, **args):

        if isinstance(obj, PcaFile):
            self._views.append(self.textView([obj.getFileName()], "PCA file"))

        elif isinstance(obj, SpiderProtCustomMask):
            mask = obj.outputMask
            self._visualize(mask)
            # Visualize the whole stack with all filenames
            self._views.append(DataView(mask.getFileName()))

        else:
            XmippViewer._visualize(self, obj)

        return self._views
Example #6
0
    def _visualize(self, obj, **args):
         
        if isinstance(obj, EmanProtBoxing):
            coords = obj.getCoords()
            if coords:
                XmippViewer._visualize(self, obj.outputCoordinates)
             
        elif isinstance(obj, EmanProtInitModel):
            obj = obj.outputVolumes
            fn = obj.getFileName()
            labels = 'id enabled comment _filename '
            objCommands = "'%s' '%s' '%s'" % (OBJCMD_CLASSAVG_PROJS,
                                              OBJCMD_PROJS,
                                              OBJCMD_INITVOL)

            self._views.append(vw.ObjectView(self._project, obj.strId(), fn,
                                          viewParams={showj.MODE: showj.MODE_MD,
                                                      showj.ORDER: labels,
                                                      showj.VISIBLE: labels,
                                                      showj.RENDER: '_filename',
                                                      showj.OBJCMDS: objCommands},
                                             ))
 def __init__(self, **args):
     XmippViewer.__init__(self, **args)
 def _visualize(self, obj, **args):
     if hasattr(obj, 'outputVolumes'):
         XmippViewer._visualize(self, self.protocol.outputVolumes)
     fnBasis = self.protocol._getPath('basis.stk')
     if exists(fnBasis):
         self._views.append(DataView(fnBasis))
 def __init__(self, **args):
     XmippViewer.__init__(self, **args)
Example #10
0
 def _visualize(self, obj, **args):
     if hasattr(obj, 'outputVolumes'):
         XmippViewer._visualize(self,self.protocol.outputVolumes)
     fnBasis=self.protocol._getPath('basis.stk')
     if exists(fnBasis):
         self._views.append(DataView(fnBasis))