def denoise():
wave = 'db4'
sig = 20
tau1 = 3*sig
tau2 = 3*sig/2
noisyLena = lena + np.random.normal(scale = sig, size=lena.shape)
lw = pywt.wavedec2(noisyLena, wave, level=4)
lwt1 = hardThresh(lw, tau1)
lwt2 = softThresh(lw, tau2)
rlena1 = pywt.waverec2(lwt1, wave)
rlena2 = pywt.waverec2(lwt2, wave)
plt.subplot(131)
plt.imshow(noisyLena, cmap=plt.cm.Greys_r)
plt.axis('off')
plt.subplot(132)
plt.imshow(rlena1, cmap=plt.cm.Greys_r)
plt.axis('off')
plt.subplot(133)
plt.imshow(rlena2, cmap=plt.cm.Greys_r)
plt.axis('off')
plt.savefig('denoise.pdf')
plt.clf()
def generate_basis():
"""generate the basis"""
x = np.zeros((56, 56))
coefs = pywt.wavedec2(x, 'db1')
n_levels = len(coefs)
basis = []
for i in range(n_levels):
coefs[i] = list(coefs[i])
n_filters = len(coefs[i])
for j in range(n_filters):
for m in range(coefs[i][j].shape[0]):
try:
for n in range(coefs[i][j].shape[1]):
coefs[i][j][m][n] = 1
temp_basis = pywt.waverec2(coefs, 'db1')
basis.append(temp_basis)
coefs[i][j][m][n] = 0
except IndexError:
coefs[i][j][m] = 1
temp_basis = pywt.waverec2(coefs, 'db1')
basis.append(temp_basis)
coefs[i][j][m] = 0
basis = np.array(basis)
return basis
def create_haar_dictionary(p=8):
import pywt
c = pywt.wavedec2(np.zeros((p, p)), 'haar')
D = []
for k in range(1, len(c)):
for i in range(3):
ck = c[k][i]
l = ck.shape[0]
for j in range(l):
for m in range(l):
ck[j, m] = 1
D += [pywt.waverec2(c, 'haar')]
ck[j, m] = 0
ck = c[0]
l = ck.shape[0]
for j in range(l):
for m in range(l):
ck[j, m] = 1
D += [pywt.waverec2(c, 'haar')]
ck[j, m] = 0
D = np.array(D).reshape(-1, p*p)
Dn = []
for i in range(15):
Dn += _translate(D[i].reshape((p, p)))
Dn = np.array(Dn).reshape((-1, p*p))
i0 = np.sum(abs(Dn), axis=1) != 0
return Dn[i0]
def denoise():
wave = 'db4'
sig = 20
tau1 = 3*sig
tau2 = 3*sig/2
noisyLena = lena + np.random.normal(scale = sig, size=lena.shape)
lw = pywt.wavedec2(noisyLena, wave, level=4)
lwt1 = hardThresh(lw, tau1)
lwt2 = softThresh(lw, tau2)
rlena1 = pywt.waverec2(lwt1, wave)
rlena2 = pywt.waverec2(lwt2, wave)
plt.subplot(131)
plt.imshow(noisyLena, cmap=plt.cm.Greys_r)
plt.axis('off')
plt.subplot(132)
plt.imshow(rlena1, cmap=plt.cm.Greys_r)
plt.axis('off')
plt.subplot(133)
plt.imshow(rlena2, cmap=plt.cm.Greys_r)
plt.axis('off')
plt.savefig('denoise.pdf')
plt.clf()
def generate_basis(im_dim=64, db_num=1):
"""generate the basis"""
x = np.zeros((im_dim, im_dim))
coefs = pywt.wavedec2(x, 'db{}'.format(db_num))
n_levels = len(coefs)
basis = []
for i in range(n_levels):
coefs[i] = list(coefs[i])
n_filters = len(coefs[i])
for j in range(n_filters):
for m in range(coefs[i][j].shape[0]):
try:
for n in range(coefs[i][j].shape[1]):
coefs[i][j][m][n] = 1 #i-th unit vector
temp_basis = pywt.waverec2(
coefs, 'db{}'.format(db_num)
) #apply wavelet decoder to e_i to get i-th column
basis.append(temp_basis)
coefs[i][j][m][n] = 0
except IndexError:
coefs[i][j][m] = 1
temp_basis = pywt.waverec2(coefs, 'db{}'.format(db_num))
basis.append(temp_basis)
coefs[i][j][m] = 0
basis = np.array(basis)
return basis
def construct_Wminv(d=8,wave_name='db1'):
"""generate the basis"""
x = np.zeros((d, d))
coefs = pywt.wavedec2(x, wave_name)
n_levels = len(coefs)
basis = []
for i in range(n_levels):
coefs[i] = list(coefs[i])
n_filters = len(coefs[i])
for j in range(n_filters):
for m in range(coefs[i][j].shape[0]):
try:
for n in range(coefs[i][j].shape[1]):
coefs[i][j][m][n] = 1
temp_basis = pywt.waverec2(coefs, wave_name)
basis.append(temp_basis)
coefs[i][j][m][n] = 0
except IndexError:
coefs[i][j][m] = 1
temp_basis = pywt.waverec2(coefs, wave_name)
basis.append(temp_basis)
coefs[i][j][m] = 0
W_ = np.array(basis)
dnew = W_.shape[0]
W_ = W_.reshape(( d*d,dnew))
return W_
def create_dictionary_haar(p=8):
import pywt
c = pywt.wavedec2(np.zeros((p, p)), 'haar')
D = []
for k in range(1, len(c)):
for i in range(3):
ck = c[k][i]
l = ck.shape[0]
for j in range(l):
for m in range(l):
ck[j, m] = 1
D += [pywt.waverec2(c, 'haar')]
ck[j, m] = 0
ck = c[0]
l = ck.shape[0]
for j in range(l):
for m in range(l):
ck[j, m] = 1
D += [pywt.waverec2(c, 'haar')]
ck[j, m] = 0
D = np.array(D).reshape(-1, p * p)
Dn = []
for i in range(15):
Dn += translate(D[i].reshape((p, p)))
return np.array(Dn).reshape((-1, p * p))
def extractNoise(image,wavelet, level, mode='sym'):
"""Extracts noise signal that is locally Gaussian N(0,sigma^2)"""
imageData = image2array(image)
outputData = []
#Procesando canales de colores
for n, imageBand in enumerate(imageData):
##print "*", n
# calculando la descomposici?n wavelet 8-tap daubechies QMF
imageCoeffs = pywt.wavedec2(imageBand, wavelet, mode, level)
outputBandCoeffs = [imageCoeffs[0]] # cA
# eliminando el coeficiente que contiene toda la informaci?n L y dejando s?lo los detalles
del imageCoeffs[0]
# para cada banda de wavelet
for n, imageDetails in enumerate(imageCoeffs):
##print "**", n
#print imageDetails
resDetails = []
# para cada subbanda V, H, D
for n, imageDetail in enumerate(imageDetails):
##print "*** detail antes ", n, " - ", imageDetail.size
# #print imageDetail
# estimando la varianza local
resDetail = lawmlN(imageDetail)
resDetails.append(resDetail)
# #print "*** detail despues", " - ", imageDetail.size
# #print resDetail
# #print " "
#imageCoeffs[n] = None
outputBandCoeffs.append(resDetails)
# reconstruyendo la imagen con los nuevos coeficientes wavelet
newBand = pywt.waverec2(outputBandCoeffs, wavelet, mode)
outputData.append(newBand)
outputData = numpy.array(outputData)
return outputData
def wavelet_dec_rec(img_blr, resize_factor=0.25):
'''
wavelet_dec_rec
Take a picture, does a wavelet decompsition, remove the low frequency
(approximation) and highest details (noises)
and return the recomposed picture
'''
img_shape = img_blr.shape
need_resize = abs(resize_factor - 1) > 0.001
level = int(6 - log(1 / resize_factor, 2))
if need_resize:
img_blr_resize = cv2.resize(img_blr,
None,
fx=resize_factor,
fy=resize_factor)
else:
img_blr_resize = img_blr
coeffs = pywt.wavedec2(img_blr_resize, "db8", level=level)
#remove the low freq (approximation)
coeffs[0].fill(0)
#remove the highest details (noises)
coeffs[-1][0].fill(0)
coeffs[-1][1].fill(0)
coeffs[-1][2].fill(0)
img_rec_resize = pywt.waverec2(coeffs, "db8")
if need_resize:
img_rec = cv2.resize(img_rec_resize, (img_shape[1], img_shape[0]))
else:
img_rec = img_rec_resize
return img_rec
def wavelet_inverse(coeffs,
locations,
wavelet,
mode='symmetric',
axes=(-2, -1)):
'''Wrapper for the multilevel 2D inverse DWT.
Parameters
----------
coeffs : array_like
Combined coefficients.
locations : list
Indices where the coefficients for each block are located.
wavelet : str
Wavelet to use.
mode : str, optional
Signal extension mode.
axes : tuple, optional
Axes over which to compute the IDWT.
Returns
-------
array_like
Inverse transform of wavelet transform, the original image.
Notes
-----
coeffs, locations are the output of forward().
'''
# Split coefficients out into coefficient list
coeff_list = split_chunks(coeffs, locations)
return pywt.waverec2(coeff_list, wavelet, mode, axes)
def Wavelet(pan, hs):
M, N, c = pan.shape
m, n, C = hs.shape
ratio = int(np.round(M / m))
print('get sharpening ratio: ', ratio)
assert int(np.round(M / m)) == int(np.round(N / n))
#upsample
u_hs = upsample_interp23(hs, ratio)
pan = np.squeeze(pan)
pc = pywt.wavedec2(pan, 'haar', level=2)
rec = []
for i in range(C):
temp_dec = pywt.wavedec2(u_hs[:, :, i], 'haar', level=2)
pc[0] = temp_dec[0]
temp_rec = pywt.waverec2(pc, 'haar')
temp_rec = np.expand_dims(temp_rec, -1)
rec.append(temp_rec)
I_Wavelet = np.concatenate(rec, axis=-1)
#adjustment
I_Wavelet[I_Wavelet < 0] = 0
I_Wavelet[I_Wavelet > 1] = 1
return np.uint8(I_Wavelet * 255)
def cdf97_2d_inverse(coeffs, locations, axes=(-2, -1)):
'''Inverse 2D Cohen–Daubechies–Feauveau 9/7 wavelet.
Parameters
----------
coeffs : array_like
Stitched together wavelet transform.
locations : list
Output of cdf97_2d_forward().
axes : tuple, optional
Axes to perform wavelet transform across.
Returns
-------
array_like
Inverse CDF97 transform.
'''
# Split coefficients out into coefficient list
coeff_list = split_chunks(coeffs, locations)
return pywt.waverec2(coeff_list,
wavelet='bior4.4',
mode='periodization',
axes=axes)
def haar_recomp(params, rest_coeff, final_arr):
reverse_flatten(rest_coeff, final_arr, 0)
final_tuple = [ params]
for i in rest_coeff:
final_tuple.append(i)
final_tuple = tuple(final_tuple)
return pywt.waverec2(final_tuple, 'haar')
def w2d(img, mode='haar', level=1):
imArray = cv2.imread(img)
#Datatype conversions
#convert to grayscale
imArray = cv2.cvtColor( imArray,cv2.COLOR_RGB2GRAY )
#convert to float
imArray = np.float32(imArray)
imArray /= 255.;
# compute coefficients
coeffs=pywt.wavedec2(imArray, mode, level=level)
#print len(coeffs)
#Process Coefficients
coeffs_H=list(coeffs[1][0])
coeffs_H *= 0
coeffs[1][0] = coeffs_H
# reconstruction
imArray_H=pywt.waverec2(coeffs, mode);
imArray_H *= 255.;
imArray_H = np.uint8(imArray_H)
#Display result
cv2.imshow('image',imArray_H)
cv2.waitKey(0)
cv2.destroyAllWindows()
def idwt2(self):
"""
Test pypwt for DWT reconstruction (waverec2).
"""
W = self.W
levels = self.levels
# inverse DWT with pypwt
W.forward()
logging.info("computing Wavelets.inverse from pypwt")
t0 = time()
W.inverse()
logging.info("Wavelets.inverse took %.3f ms" % elapsed_ms(t0))
if self.do_pywt:
# inverse DWT with pywt
Wpy = pywt.wavedec2(self.data, self.wname, mode=per_kw, level=levels)
logging.info("computing waverec2 from pywt")
_ = pywt.waverec2(Wpy, self.wname, mode=per_kw)
logging.info("pywt took %.3f ms" % elapsed_ms(t0))
# Check reconstruction
W_image = W.image
maxerr = _calc_errors(self.data, W_image, "[rec]")
self.assertTrue(maxerr < self.tol, msg="[%s] something wrong with the reconstruction (errmax = %e)" % (self.wname, maxerr))
def munchetal_filter(im, wlevel, sigma, wname='db15'):
# Wavelet decomposition:
coeffs = pywt.wavedec2(im.astype(np.float32), wname, level=wlevel)
coeffsFlt = [coeffs[0]]
# FFT transform of horizontal frequency bands:
for i in range(1, wlevel + 1):
# FFT:
fcV = np.fft.fftshift(np.fft.fft(coeffs[i][1], axis=0))
my, mx = fcV.shape
# Damping of vertical stripes:
damp = 1 - np.exp(-(np.arange(-np.floor(my / 2.), -np.floor(my / 2.) + my) ** 2) / (2 * (sigma ** 2)))
dampprime = np.kron(np.ones((1, mx)), damp.reshape((damp.shape[0], 1)))
fcV = fcV * dampprime
# Inverse FFT:
fcVflt = np.real(np.fft.ifft(np.fft.ifftshift(fcV), axis=0))
cVHDtup = (coeffs[i][0], fcVflt, coeffs[i][2])
coeffsFlt.append(cVHDtup)
# Get wavelet reconstruction:
im_f = np.real(pywt.waverec2(coeffsFlt, wname))
# Return image according to input type:
if (im.dtype == 'uint16'):
# Check extrema for uint16 images:
im_f[im_f < np.iinfo(np.uint16).min] = np.iinfo(np.uint16).min
im_f[im_f > np.iinfo(np.uint16).max] = np.iinfo(np.uint16).max
# Return filtered image (an additional row and/or column might be present):
return im_f[0:im.shape[0], 0:im.shape[1]].astype(np.uint16)
else:
return im_f[0:im.shape[0], 0:im.shape[1]]
def whash(image,
hash_size=8,
image_scale=None,
mode='haar',
remove_max_haar_ll=True):
import pywt
if image_scale is not None:
assert image_scale & (image_scale -
1) == 0, "image_scale is not power of 2"
else:
image_natural_scale = 2**int(numpy.log2(min(image.size)))
image_scale = max(image_natural_scale, hash_size)
ll_max_level = int(numpy.log2(image_scale))
level = int(numpy.log2(hash_size))
assert hash_size & (hash_size - 1) == 0, "hash_size is not power of 2"
assert level <= ll_max_level, "hash_size in a wrong range"
dwt_level = ll_max_level - level
image = image.convert("L").resize((image_scale, image_scale),
Image.ANTIALIAS)
pixels = numpy.asarray(image) / 255
if remove_max_haar_ll:
coeffs = pywt.wavedec2(pixels, 'haar', level=ll_max_level)
coeffs = list(coeffs)
coeffs[0] *= 0
pixels = pywt.waverec2(coeffs, 'haar')
coeffs = pywt.wavedec2(pixels, mode, level=dwt_level)
dwt_low = coeffs[0]
med = numpy.median(dwt_low)
diff = dwt_low > med
return diff
def inv(self, wavelet_vector):
'''Inverse WT
cVec_list: vector containing all wavelet coefficients as vectrized in __call__'''
#check if shapes of the coefficient matrices are known
if self.cMat_shapes == []:
print("Call WT first to obtain shapes of coefficient matrices")
return None
cVec_shapes = list(map(np.prod, self.cMat_shapes))
split_indices = list(accumulate(cVec_shapes))
cVec_list = np.split(wavelet_vector, split_indices)
#reverse amplification
cVec_list = [
cVec_list[j] / self.amplify[j] for j in range(3 * self.level + 1)
]
#back to level format
coeffs = [np.reshape(cVec_list[0], self.cMat_shapes[0])]
for j in range(self.level):
triple = cVec_list[3 * j + 1:3 * (j + 1) + 1]
triple = [
np.reshape(triple[i], self.cMat_shapes[1 + 3 * j + i])
for i in range(3)
]
coeffs = coeffs + [tuple(triple)]
return pywt.waverec2(coeffs, wavelet=self.wavelet)
def testWave(img1, img2):
transf1 = pywt.wavedec2(img1, 'haar', level=4)
transf2 = pywt.wavedec2(img2, 'haar', level=4)
assert len(transf1) == len(transf2)
recWave = []
for k in range(len(transf1)):
# 处理低频分量
if k == 0:
loWeight1, loWeight2 = varianceWeight(transf1[0], transf2[0])
lowFreq = np.zeros(transf2[0].shape)
row, col = transf1[0].shape
for i in range(row):
for j in range(col):
lowFreq[i, j] = loWeight1 * transf1[0][
i, j] + loWeight2 * transf2[0][i, j]
recWave.append(lowFreq)
continue
# 处理高频分量
cvtArray = []
for array1, array2 in zip(transf1[k], transf2[k]):
tmp_row, tmp_col = array1.shape
highFreq = np.zeros((tmp_row, tmp_col))
var1 = getVarianceImg(array1)
var2 = getVarianceImg(array2)
for i in range(tmp_row):
for j in range(tmp_col):
highFreq[i,
j] = array1[i,
j] if var1[i,
j] > var2[i,
j] else array2[i,
j]
cvtArray.append(highFreq)
recWave.append(tuple(cvtArray))
return pywt.waverec2(recWave, 'haar')
def hfilter(diff_image, var_image, threshold=1, ndamp=10):
"""
This code was inspired from: https://github.com/spacetelescope/sprint_notebooks/blob/master/lucy_damped_haar.ipynb
I believe it was initially written by Justin Ely: https://github.com/justincely
It was buggy and not working properly with every image sizes.
I have thus exchanged it by using pyWavelet (pywt) and a custom function htrans
to calculate the matrix for the var_image.
"""
him, coeff_slices = pywt.coeffs_to_array(pywt.wavedec2(
diff_image.astype(np.float), 'haar'),
padding=0)
dvarim = htrans(var_image.astype(np.float))
sqhim = ((him / threshold)**2) / dvarim
index = np.where(sqhim < 1)
if len(index[0]) == 0:
return diff_image
# Eq. 8 of White is derived leading to N*x^(N-1)-(N-1)*x^N :DOI: 10.1117/12.176819
sqhim = sqhim[index] * (ndamp * sqhim[index]**(ndamp - 1) -
(ndamp - 1) * sqhim[index]**ndamp)
him[index] = sign(threshold * np.sqrt(dvarim[index] * sqhim), him[index])
return pywt.waverec2(
pywt.array_to_coeffs(him, coeff_slices, output_format='wavedec2'),
'haar')[:diff_image.shape[0], :diff_image.shape[1]]
def w2d(img):
model = 'haar'
level = 1
image_array = convert_image(image, 512)
watermark_array = convert_image(watermark, 128)
coeffs_image = process_coefficients(image_array, model, level=level)
print_image_from_array(coeffs_image[0], 'LL_after_DWT.jpg')
dct_array = apply_dct(coeffs_image[0])
print_image_from_array(dct_array, 'LL_after_DCT.jpg')
dct_array = embed_watermark(watermark_array, dct_array)
print_image_from_array(dct_array, 'LL_after_embeding.jpg')
coeffs_image[0] = inverse_dct(dct_array)
print_image_from_array(coeffs_image[0], 'LL_after_IDCT.jpg')
# reconstruction
image_array_H=pywt.waverec2(coeffs_image, model)
print_image_from_array(image_array_H, 'image_with_watermark.jpg')
# recover images
recover_watermark(image_array = image_array_H, model=model, level = level)
def log_wavelet_denoise(img: LIPImage, wavelet, treshold):
coeffs = wavedec2(img.gray_levels, wavelet, level=4)
for i in range(1, 5):
coeffs[i] = wavelet_threshold(treshold, coeffs[i])
img = waverec2(coeffs, wavelet)
return img
def wavedec2(x, wavelet='haar', inverse=0):
if not inverse:
# get the coefficients
coeffs = pywt.wavedec2(x, wavelet)
# arrange the coefficients to form an image
imgg = coeffs[0]
for i in range(1, len(coeffs)):
cH, cV, cD = coeffs[i]
try:
imgg = np.concatenate((imgg, cH), axis=1)
imggBelow = np.concatenate((cV, cD), axis=1)
imgg = np.concatenate((imgg, imggBelow), axis=0)
except:
raise (
"Input Error: the input's shape must be able to be divided by 2^n"
)
return imgg
else:
# collect the images to form the coefficients
size = 1
coeffs = [x[:size, :size]]
while size < x.shape[0]:
cH = x[:size, size:2 * size]
cV = x[size:2 * size, :size]
cD = x[size:2 * size, size:2 * size]
coeffs.append((cH, cV, cD))
size *= 2
# perform inverse dwt
img = pywt.waverec2(coeffs, wavelet)
return img
def visualizeWT(imageIn, show=False):
#split the image into its rgb channels
r = imageIn[:, :, 2]
g = imageIn[:, :, 1]
b = imageIn[:, :, 0]
imgs = []
for imArray in [r, g, b]:
#convert to float
imArray = np.float32(imArray)
imArray /= 255
# compute coefficients
coeffs = pywt.wavedec2(imArray, 'haar', level=1)
#Process Coefficients
coeffs_H = list(coeffs)
coeffs_H[0] *= 0
# reconstruction
imArray_H = pywt.waverec2(coeffs_H, 'haar')
imArray_H *= 255
imArray_H = np.uint8(imArray_H)
cv2.namedWindow('image', cv2.WINDOW_NORMAL)
cv2.imshow('image', imArray_H)
cv2.waitKey(0)
cv2.destroyAllWindows()
def main():
img1 = cv2.imread("/home/ajit/Desktop/images.jpg")
img2 = copy.copy(img1)
b1, g1, r1 = cv2.split(img2)
hsv = cv2.cvtColor(img1, cv2.COLOR_BGR2HSV)
h, s, v = cv2.split(hsv)
a = h.max()
b = h.min()
h -= h.min()
h = h / (a - b)
h *= 179
s -= s.min()
s = s / (s.max() - s.min())
s *= 255
v -= v.min()
v = v / (v.max() - v.min())
v *= 255
hsv = cv2.merge([h, s, v])
hsv1 = hsv.astype(np.float32)
rgb = cv2.cvtColor(hsv1, cv2.COLOR_HSV2RGB)
b, g, r = cv2.split(rgb)
r -= r.min()
r *= 255 / (r.max() - r.min())
g -= g.min()
g *= 255 / (g.max() - g.min())
b -= b.min()
b *= 255 / (b.max() - b.min())
cl1 = cv2.merge([b, g, r])
clahe = cv2.createCLAHE()
b2 = clahe.apply(b1)
g2 = clahe.apply(g1)
r2 = clahe.apply(r1)
cl2 = cv2.merge([b2, g2, r2])
cooef1 = pywt.wavedec2(cl1[:, :], 'db1')
cooef2 = pywt.wavedec2(cl2[:, :], 'db1')
FUSION_METHOD = 'max'
fusedCooef = []
for i in range(len(cooef1) - 1):
if (i == 0):
fusedCooef.append(fuseCoeff(cooef1[0], cooef2[0], FUSION_METHOD))
else:
c1 = fuseCoeff(cooef1[i][0], cooef2[i][0], FUSION_METHOD)
c2 = fuseCoeff(cooef1[i][1], cooef2[i][1], FUSION_METHOD)
c3 = fuseCoeff(cooef1[i][2], cooef2[i][2], FUSION_METHOD)
fusedCooef.append((c1, c2, c3))
fusedImage = pywt.waverec2(fusedCooef, 'db1')
fusedImage = np.multiply(
np.divide(fusedImage - np.min(fusedImage),
(np.max(fusedImage) - np.min(fusedImage))), 255)
fusedImage = fusedImage.astype(np.uint8)
cv2.imshow("win", fusedImage)
def wavelet_denoise(
im,
mother_wavelet: str = "db1", # Daubechies wavelet 1
levels: int = 4,
keep: float = 1 / 1e2, # percent
):
"""
:param im:
:type im:"""
coef = pywt.wavedec2(im, wavelet=mother_wavelet, level=levels)
coef_array, coef_slices = pywt.coeffs_to_array(coef)
Csort = numpy.sort(numpy.abs(coef_array.reshape(-1)))
coef_filt = pywt.array_to_coeffs(
coef_array * (numpy.abs(coef_array) > Csort[int(
numpy.floor((1 - keep) * len(Csort)))]),
coef_slices,
output_format=CoeffFormatEnum.wavedec2.value,
)
recon = pywt.waverec2(coef_filt, wavelet=mother_wavelet)
return recon
def w2d(img, mode='haar', level=1):
imArray = cv2.imread(img)
# Datatype conversions
# convert to grayscale
imArray = cv2.cvtColor(imArray, cv2.COLOR_BGR2GRAY)
# convert to float
imArray = np.float32(imArray)
# normalize
imArray /= 255
# compute coefficients
coeffs = pywt.wavedec2(imArray, mode, level=level)
# Process Coefficients
coeffs_H = list(coeffs)
coeffs_H[0] *= 0
# reconstruction
imArray_H = pywt.waverec2(coeffs_H, mode)
imArray_H *= 255
imArray_H = np.uint8(imArray_H)
# Display result
cv2.imshow('image', imArray_H)
cv2.waitKey(0)
cv2.destroyAllWindows()
def fromWavelet(wavImg,wavelet='haar',mode='symmetric'):
"""
:param wavImg: a wavelet image to transform back into image space
:param wavelet: any common, named wavelet, including
'Haar' (default)
'Daubechies'
'Symlet'
'Coiflet'
'Biorthogonal'
'ReverseBiorthogonal'
'DiscreteMeyer'
'Gaussian'
'MexicanHat'
'Morlet'
'ComplexGaussian'
'Shannon'
'FrequencyBSpline'
'ComplexMorlet'
or a custom [ [lowpass_decomposition],
[highpass_decomposition],
[lowpass_reconstruction],
[highpass_reconstruction] ]
where each is a pair of floating point values
:param mode: str or 2-tuple of str, optional
Signal extension mode, see Modes (default: �symmetric�). This can also be a tuple containing a mode to apply along each axis in axes.
See also:
https://pywavelets.readthedocs.io/en/latest/ref/index.html
"""
return pywt.waverec2(wavImg,_wavelet(wavelet),mode)
def give_high_freq(img):
coeffs = pywt.wavedec2(img, 'haar', level=2)
coeffs[0] = np.zeros_like(coeffs[0])
new_img = pywt.waverec2(coeffs, 'haar')
new_img = new_img.astype('uint8')
return new_img[:, :, :-1]
def w2d(file, mode='db1', level=10):
print(file)
imArray = cv2.imread(file + ".jpg")
#Datatype conversions
#convert to grayscale
imArray = cv2.cvtColor(imArray, cv2.COLOR_BGR2GRAY)
#convert to float
imArray = np.float32(imArray)
imArray /= 255
# compute coefficients
coeffs = pywt.wavedec2(imArray, mode, level=level)
#Process Coefficients
coeffs_H = list(coeffs)
coeffs_H[0] *= 0
# reconstruction
imArray_H = pywt.waverec2(coeffs_H, mode)
imArray_H *= 255
imArray_H = np.uint8(imArray_H)
#Display result
if (file[:2] == "./"):
file = file[5:]
np.savetxt("./textureAndShape/db1/" + file + "Db1.csv", imArray_H)
#w2d("fruit",'db1',10)
def w2dReg(img, mode=mode, level=level, noiseSigma = noiseSigma):
# compute coefficients
noisy_img = add_noise(img, noiseSigma = noiseSigma)
rec_coeffs = denoise(noisy_img, mode, level, noiseSigma)
# reconstruction
rec_img = pywt.waverec2(rec_coeffs, mode);
return noisy_img, rec_img, len(rec_coeffs) - 1
def incorporateTexture(image):
# Transforming image to double type
image = np.float32(image)
# Changing domain to YCrCb
image = cst.BGR2YCrCb(image)
Y, Cr, Cb = cv2.split(image)
# Wavelet Transformation in 2 levels
(Sl, (Sh1, Sv1, Sd1), (Sh2, Sv2, Sd2)) = pywt.wavedec2(Y, 'db1', level=2)
# Resizing layers
reducedCb = cv2.resize(
Cb, (Sd2.shape[1], Sd2.shape[0]), interpolation=cv2.INTER_LANCZOS4)
reducedCr = cv2.resize(
Cr, (Sv2.shape[1], Sv2.shape[0]), interpolation=cv2.INTER_LANCZOS4)
# Acquiring Cb/Cr-plus e Cb/Cr-minus
CbPlus, CbMinus = cst.dividePlusMinus(reducedCb)
CrPlus, CrMinus = cst.dividePlusMinus(reducedCr)
# Resizing Cb- to 1/4 of original size
reducedCbMinus = cv2.resize(
CbMinus, (Sd1.shape[1], Sd1.shape[0]), interpolation=cv2.INTER_LANCZOS4)
# Inverse Wavelet Transformation
newYSecondTry = (pywt.waverec2(
(Sl, (Sh1, Sv1, reducedCbMinus), (CrPlus, CbPlus, CrMinus)), 'db1'))
return newYSecondTry
def backprojection_2X(Ir, Orig):
myfilter = 'db2' #'bior4.4'
upscale_lvl = 1
mode = 'smooth'
wd1 = pywt.wavedec2(Orig, myfilter, level=upscale_lvl, mode=mode)
# corg = np.append(wd1[0].ravel(),[wd1[1][0].ravel(), wd1[1][1].ravel(), wd1[1][2].ravel()])
ilowc = wd1[0] / 2
rangeImg = [np.amin(ilowc), np.amax(ilowc)]
Ir = range0toN(Ir, rangeImg)
wd2 = pywt.wavedec2(Ir, myfilter, level=upscale_lvl, mode=mode)
crec = wd2
crec[0] = 2 * ilowc
if (wd2[0].shape != wd2[1][0].shape):
lst = list()
for i in range(0, len(wd2[1])):
# lst.append(wd2[1][i].T)
lst.append(np.reshape(wd2[1][i].ravel(), wd2[0].shape))
crec[1] = lst
irec = pywt.waverec2(crec, myfilter, mode=mode)
ibp = range0toN(irec, rangeImg)
return ibp
def apply_wavelet_reconstruction(data, wavelet_name, ignore_level=None):
"""
Apply 2D wavelet reconstruction.
Parameters
----------
data : list or tuple
The first element is an 2D-array, next elements are tuples of three
2D-arrays. i.e [mat_n, (cH_level_n, cV_level_n, cD_level_n), ...,
(cH_level_1, cV_level_1, cD_level_1)].
wavelet_name : str
Name of a wavelet. E.g. "db5"
ignore_level : int, optional
Decomposition level to be ignored for reconstruction.
Returns
-------
array_like
2D array. Note that the sizes of the array are always even numbers.
"""
if ignore_level is not None:
level = len(data[1:])
if level >= ignore_level > 0:
data[-ignore_level] = tuple(
[np.zeros_like(v) for v in data[-ignore_level]])
return pywt.waverec2(data, wavelet_name)
def blend_images(base, texture, level=4, mode='sp1', base_gain=None, texture_gain=None):
base_data = image2array(base)
texture_data = image2array(texture)
output_data = []
for base_band, texture_band in zip(base_data, texture_data):
base_band_coeffs = pywt.wavedec2(base_band, 'db2', mode, level)
texture_band_coeffs = pywt.wavedec2(texture_band, 'db2', mode, level)
output_band_coeffs = [base_band_coeffs[0]]
del base_band_coeffs[0], texture_band_coeffs[0]
for n, (base_band_details, texture_band_details) in enumerate(
zip(base_band_coeffs, texture_band_coeffs)):
blended_details = []
for (base_detail, texture_detail) in zip(base_band_details, texture_band_details):
if base_gain is not None:
base_detail *= base_gain
if texture_gain is not None:
texture_detail *= texture_gain
blended = numpy.where(abs(base_detail) > abs(texture_detail), base_detail, texture_detail)
blended_details.append(blended)
base_band_coeffs[n] = texture_band_coeffs[n] = None
output_band_coeffs.append(blended_details)
new_band = pywt.waverec2(output_band_coeffs, 'db2', mode)
output_data.append(new_band)
del new_band, base_band_coeffs, texture_band_coeffs
del base_data, texture_data
output_data = numpy.array(output_data)
return array2image(output_data, base.mode)
def test_equal_oddshape(size):
wave = 'db3'
J = 3
mode = 'symmetric'
x = torch.randn(5, 4, *size).to(dev)
dwt1 = DWTForward(J=J, wave=wave, mode=mode).to(dev)
iwt1 = DWTInverse(wave=wave, mode=mode).to(dev)
dwt2 = DWTForward(J=J, wave=wave, mode=mode).to(dev)
iwt2 = DWTInverse(wave=wave, mode=mode).to(dev)
yl1, yh1 = dwt1(x)
x1 = iwt1((yl1, yh1))
yl2, yh2 = dwt2(x)
x2 = iwt2((yl2, yh2))
# Test it is the same as doing the PyWavelets wavedec
coeffs = pywt.wavedec2(x.cpu().numpy(), wave, level=J, axes=(-2,-1),
mode=mode)
X2 = pywt.waverec2(coeffs, wave, mode=mode)
np.testing.assert_array_almost_equal(X2, x1.detach(), decimal=PREC_FLT)
np.testing.assert_array_almost_equal(X2, x2.detach(), decimal=PREC_FLT)
np.testing.assert_array_almost_equal(yl1.cpu(), coeffs[0], decimal=PREC_FLT)
np.testing.assert_array_almost_equal(yl2.cpu(), coeffs[0], decimal=PREC_FLT)
for j in range(J):
for b in range(3):
np.testing.assert_array_almost_equal(
coeffs[J-j][b], yh1[j][:,:,b].cpu(), decimal=PREC_FLT)
np.testing.assert_array_almost_equal(
coeffs[J-j][b], yh2[j][:,:,b].cpu(), decimal=PREC_FLT)
def w2d(img, mode='haar', level=1):
kernel_size = 3
scale = 1
delta = 0
ddepth = cv2.CV_16UC3
#Datatype conversions
#convert to grayscale
imArray = cv2.cvtColor(image,cv2.COLOR_BGR2GRAY)
#convert to float
imArray = np.float32(imArray)
imArray /= 255;
# compute coefficients
coeffs=pywt.wavedec2(imArray, mode, level=level)
#Process Coefficients
coeffs_H=list(coeffs)
coeffs_H[0] *= 0;
# reconstruction
imArray_H=pywt.waverec2(coeffs_H, mode);
imArray_H *= 255;
imArray_H = np.uint8(imArray_H)
#print(imArray_H)
blur = cv2.GaussianBlur(imArray_H,(3,3),0,0, cv2.BORDER_DEFAULT)
laplacian = cv2.Laplacian(blur, ddepth = ddepth, ksize = kernel_size, scale = scale,delta = delta, borderType=cv2.BORDER_DEFAULT)
(mean, stddev) = cv2.meanStdDev(laplacian)
laplacian_operator_std_dev = stddev[0]
laplacian_operator_variance = stddev[0]*stddev[0]
return(laplacian_operator_variance)
def munchetal_filter(im, wlevel, sigma, wname='db15'):
# Wavelet decomposition:
coeffs = pywt.wavedec2(im.astype(np.float32), wname, level=wlevel)
coeffsFlt = [coeffs[0]]
# FFT transform of horizontal frequency bands:
for i in range(1, wlevel + 1):
# FFT:
fcV = np.fft.fftshift(np.fft.fft(coeffs[i][1], axis=0))
my, mx = fcV.shape
# Damping of vertical stripes:
damp = 1 - np.exp(
-(np.arange(-np.floor(my / 2.), -np.floor(my / 2.) + my)**2) /
(2 * (sigma**2)))
dampprime = np.kron(np.ones((1, mx)), damp.reshape(
(damp.shape[0], 1))) # np.tile(damp[:, np.newaxis], (1, mx))
fcV = fcV * dampprime
# Inverse FFT:
fcVflt = np.real(np.fft.ifft(np.fft.ifftshift(fcV), axis=0))
cVHDtup = (coeffs[i][0], fcVflt, coeffs[i][2])
coeffsFlt.append(cVHDtup)
# Get wavelet reconstruction:
im_f = np.real(pywt.waverec2(coeffsFlt, wname))
# Return image according to input type:
if (im.dtype == 'uint16'):
# Check extrema for uint16 images:
im_f[im_f < np.iinfo(np.uint16).min] = np.iinfo(np.uint16).min
im_f[im_f > np.iinfo(np.uint16).max] = np.iinfo(np.uint16).max
# Return filtered image (an additional row and/or column might be present):
return im_f[0:im.shape[0], 0:im.shape[1]].astype(np.uint16)
else:
return im_f[0:im.shape[0], 0:im.shape[1]]
def _call(self, coeff):
"""Compute the discrete 1D, 2D or 3D inverse wavelet transform.
Parameters
----------
coeff : `DiscreteLpVector`
Returns
-------
arr : `DiscreteLpVector`
"""
if len(self.range.shape) == 1:
coeff_list = array_to_pywt_coeff(coeff, self.size_list)
x = pywt.waverec(coeff_list, self.wbasis, self.mode)
return self.range.element(x)
elif len(self.range.shape) == 2:
coeff_list = array_to_pywt_coeff(coeff, self.size_list)
x = pywt.waverec2(coeff_list, self.wbasis, self.mode)
return self.range.element(x)
elif len(self.range.shape) == 3:
coeff_dict = array_to_pywt_coeff(coeff, self.size_list)
x = wavelet_reconstruction3d(coeff_dict, self.wbasis, self.mode,
self.nscales)
return self.range.element(x)
def test_waverec2_axes_subsets():
rstate = np.random.RandomState(0)
data = rstate.standard_normal((8, 8, 8))
# test all combinations of 2 out of 3 axes transformed
for axes in combinations((0, 1, 2), 2):
coefs = pywt.wavedec2(data, 'haar', axes=axes)
rec = pywt.waverec2(coefs, 'haar', axes=axes)
assert_allclose(rec, data, atol=1e-14)
def waveletDenoise(u,noiseSigma):
wavelet = pywt.Wavelet('bior6.8')
levels = int( np.log2(u.shape[0]) )
waveletCoeffs = pywt.wavedec2( u, wavelet, level=levels)
threshold=noiseSigma*np.sqrt(2*np.log2(u.size))
NWC = [pywt.thresholding.soft(x,threshold) for x in waveletCoeffs]
u = pywt.waverec2( NWC, wavelet)[:u.shape[0],:u.shape[1]]
return u
def trans(imArray, mode='haar', level=1):
coeffs = pywt.wavedec2(imArray, mode, level=level)
coeffs_H = list(coeffs)
coeffs_H[0] = np.zeros(coeffs_H[0].shape)
imArray_H = pywt.waverec2(coeffs_H, mode)
#return imArray
#print "img1", imArray[0]
#print "img2", imArray_H[0]
return imArray_H
def test_waverec2_all_wavelets_modes():
# test 2D case using all wavelets and modes
rstate = np.random.RandomState(1234)
r = rstate.randn(80, 96)
for wavelet in wavelist:
for mode in pywt.Modes.modes:
coeffs = pywt.wavedec2(r, wavelet, mode=mode)
assert_allclose(pywt.waverec2(coeffs, wavelet, mode=mode),
r, rtol=tol_single, atol=tol_single)
def test_waverec2_accuracies():
rstate = np.random.RandomState(1234)
x0 = rstate.randn(4, 4)
for dt, tol in dtypes_and_tolerances:
x = x0.astype(dt)
if np.iscomplexobj(x):
x += 1j*rstate.randn(4, 4).astype(x.real.dtype)
coeffs = pywt.wavedec2(x, 'db1')
assert_(len(coeffs) == 3)
assert_allclose(pywt.waverec2(coeffs, 'db1'), x, atol=tol, rtol=tol)
def rmatvec(x):
iinf = 0
isup = b[0].size
yl = [x[iinf:isup].reshape(b[0].shape), ]
for i in xrange(1, len(b)):
tmp = list()
for j in xrange(3):
iinf = copy(isup)
isup = iinf + b[i][j].size
tmp.append(x[iinf:isup].reshape(b[i][j].shape))
yl.append(tmp)
return pywt.waverec2(yl, wavelet, mode=mode)[:a.shape[0], :a.shape[1]].flatten()
def w2d(img, mode='haar', level=1):
#imArray = cv2.imread(img)
imArray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY)
imArray = np.float32(imArray)
imArray /=255
coeffs = pywt.wavedec2(imArray, mode, level=level)
coeffs_H = list(coeffs)
coeffs_H[0]*=0
imArray_H = pywt.waverec2(coeffs_H, mode)
imArray_H *= 255
imArray_H = np.uint8(imArray_H)
cv2.imshow("image", imArray_H)
def inverse(self):
tmp = []
tmp.append(self.a)
for k in range(0, len(self.h)):
detcoefs = []
detcoefs.append(self.h[k])
detcoefs.append(self.v[k])
detcoefs.append(self.d[k])
tmp.append(detcoefs)
res = pywt.waverec2(tmp, self.wname, mode='per')
if self.do_random_shifts is True: return _circular_shift(res, -self.shifts[0], -self.shifts[1])
else: return res
def prob4(image="swanlake_polluted.jpg"):
img = imread(image, True)
wavelet = pywt.Wavelet('haar')
coeffs = pywt.wavedec2(img, wavelet)
print len(coeffs)
cleaned = pywt.waverec2(coeffs[:-1], wavelet)
plt.subplot(121)
plt.imshow(img,cmap='gray')
plt.title("Original")
plt.subplot(122)
plt.imshow(cleaned, cmap='gray')
plt.title("Cleaned")
plt.show()
def test_pywt_coeff_to_array_and_array_to_pywt_coeff():
# Verify that the helper function does indeed work as expected
wbasis = pywt.Wavelet('db1')
mode = 'zpd'
nscales = 2
n = 16
# 1D test
size_list = coeff_size_list((n,), nscales, wbasis, mode)
x = np.random.rand(n)
coeff_list = pywt.wavedec(x, wbasis, mode, nscales)
coeff_arr = pywt_coeff_to_array(coeff_list, size_list)
assert isinstance(coeff_arr, (np.ndarray))
length_of_array = np.prod(size_list[0])
length_of_array += sum(np.prod(shape) for shape in size_list[1:-1])
assert all_equal(len(coeff_arr), length_of_array)
coeff_list2 = array_to_pywt_coeff(coeff_arr, size_list)
assert all_equal(coeff_list, coeff_list2)
reconstruction = pywt.waverec(coeff_list2, wbasis, mode)
assert all_almost_equal(reconstruction, x)
# 2D test
size_list = coeff_size_list((n, n), nscales, wbasis, mode)
x = np.random.rand(n, n)
coeff_list = pywt.wavedec2(x, wbasis, mode, nscales)
coeff_arr = pywt_coeff_to_array(coeff_list, size_list)
assert isinstance(coeff_arr, (np.ndarray))
length_of_array = np.prod(size_list[0])
length_of_array += sum(3 * np.prod(shape) for shape in size_list[1:-1])
assert all_equal(len(coeff_arr), length_of_array)
coeff_list2 = array_to_pywt_coeff(coeff_arr, size_list)
assert all_equal(coeff_list, coeff_list2)
reconstruction = pywt.waverec2(coeff_list2, wbasis, mode)
assert all_almost_equal(reconstruction, x)
# 3D test
size_list = coeff_size_list((n, n, n), nscales, wbasis, mode)
x = np.random.rand(n, n, n)
coeff_dict = wavelet_decomposition3d(x, wbasis, mode, nscales)
coeff_arr = pywt_coeff_to_array(coeff_dict, size_list)
assert isinstance(coeff_arr, (np.ndarray))
length_of_array = np.prod(size_list[0])
length_of_array += sum(7 * np.prod(shape) for shape in size_list[1:-1])
assert len(coeff_arr) == length_of_array
coeff_dict2 = array_to_pywt_coeff(coeff_arr, size_list)
reconstruction = wavelet_reconstruction3d(coeff_dict2, wbasis, mode,
nscales)
assert all_equal(coeff_dict, coeff_dict)
assert all_almost_equal(reconstruction, x)
def wavelets_denoise(in_file, in_mask=None, out_file=None):
import numpy as np
import nibabel as nb
import os.path as op
import pywt as wt
if out_file is None:
fname, fext = op.splitext(op.basename(in_file))
if fext == '.gz':
fname, _ = op.splitext(fname)
out_file = op.abspath('./%s_wavelets.nii.gz' % fname)
im = nb.load(in_file)
aff = im.get_affine()
imdata = im.get_data()
datamax = imdata.max()
datamin = imdata.min()
imdata = 255. * (imdata - datamin) / (datamax - datamin)
if in_mask is not None:
mask = nb.load(in_mask).get_data()
mask[mask > 0] = 1.0
mask[mask <= 0] = 0.0
imdata *= mask
else:
mask = np.zeros_like(imdata)
mask[imdata != 0] = 1
result = np.zeros_like(imdata)
wavelet = wt.Wavelet('db10')
thres = 100
offset = (0 if imdata.shape[0] % 2 == 0 else 1,
0 if imdata.shape[1] % 2 == 0 else 1)
for z in np.arange(imdata.shape[2]):
zslice = imdata[offset[0]:, offset[1]:, z]
wcoeff = wt.wavedec2(zslice, wavelet)
nwcoeff = map(lambda x: wt.thresholding.soft(x, thres), wcoeff)
result[offset[0]:, offset[1]:, z] = wt.waverec2(nwcoeff, wavelet)
m = np.median(result[offset[0]:, offset[1]:, :])
result[offset[0]:, offset[1]:, :] = 2.0 * \
(result[offset[0]:, offset[1]:, :] - m) / 255.
nb.Nifti1Image(result, im.get_affine(),
im.get_header()).to_filename(out_file)
return out_file
def fromwav(stack, coeffs, cA, cH, cV, cD, levels, wavelet):
i1 = len(cA.flatten())
cA = stack[:i1].reshape(cA.shape)
coeffs = [cA]
for l in range(levels):
i2 = i1 + len(cH[l].flatten())
i3 = i2 + len(cV[l].flatten())
i4 = i3 + len(cD[l].flatten())
cHn = stack[i1 :i2 ].reshape(cH[l].shape)
cVn = stack[i2 :i3 ].reshape(cV[l].shape)
cDn = stack[i3 :i4 ].reshape(cD[l].shape)
coeffs.append((cHn,cVn,cDn))
i1 = i4
return pywt.waverec2(coeffs,wavelet)
def func(dframe):
frame1, frame2 = dframe[0], dframe[1]
frame1 = np.array(frame1)
frame2 = np.array(frame2)
C = pywt.wavedec2(frame1, 'db4', level=level)
S = pywt.wavedec2(frame2, 'db4', level=level)
tA2 = (C[0] + S[0])/2
coeffs = fuse(tA2, C[1:], S[1:])
fuse_img = pywt.waverec2(coeffs, 'db4')
if frame1.dtype == np.uint16:
fuse_img = fuse_img.clip(0,65535).astype(np.uint16)
elif frame1.dtype == np.uint8:
fuse_img = fuse_img.clip(0,255).astype(np.uint8)
return np.squeeze(fuse_img)
def test_multilevel_dtypes_2d():
wavelet = pywt.Wavelet('haar')
for dt_in, dt_out in zip(dtypes_in, dtypes_out):
# wavedec2, waverec2
x = np.ones((8, 8), dtype=dt_in)
errmsg = "wrong dtype returned for {0} input".format(dt_in)
cA, coeffsD2, coeffsD1 = pywt.wavedec2(x, wavelet, level=2)
assert_(cA.dtype == dt_out, "wavedec2: " + errmsg)
for c in coeffsD1:
assert_(c.dtype == dt_out, "wavedec2: " + errmsg)
for c in coeffsD2:
assert_(c.dtype == dt_out, "wavedec2: " + errmsg)
x_roundtrip = pywt.waverec2([cA, coeffsD2, coeffsD1], wavelet)
assert_(x_roundtrip.dtype == dt_out, "waverec2: " + errmsg)
def test_ravel_wavedec2_with_lists():
x1 = np.ones((8, 8))
wav = pywt.Wavelet('haar')
coeffs = pywt.wavedec2(x1, wav)
# list [cHn, cVn, cDn] instead of tuple is okay
coeffs[1:] = [list(c) for c in coeffs[1:]]
coeff_arr, slices, shapes = pywt.ravel_coeffs(coeffs)
coeffs2 = pywt.unravel_coeffs(coeff_arr, slices, shapes,
output_format='wavedec2')
x1r = pywt.waverec2(coeffs2, wav)
assert_allclose(x1, x1r, rtol=1e-4, atol=1e-4)
# wrong length list will cause a ValueError
coeffs[1:] = [list(c[:-1]) for c in coeffs[1:]] # truncate diag coeffs
assert_raises(ValueError, pywt.ravel_coeffs, coeffs)
def wavelet_transform(data, threshold):
wavelet_type = 'haar'
clean_coef = list()
compose = list()
cA2, cD2, cD1 = pywt.wavedec2(data, wavelet_type, level=2)
clean_coef.append(cA2)
clean_coef.append(cD2)
for c in cD1:
compose.append(numpy.where(((c<(-threshold)) | (c>threshold)), c, 0))
clean_coef.append(tuple(compose))
t = pywt.waverec2(clean_coef, wavelet_type)
values = t.astype(int)
return values
def blend_images(base, texture, wavelet, level, mode='smooth', base_gain=None,
texture_gain=None):
"""Blend loaded images at `level` of granularity using `wavelet`"""
base_data = image2array(base)
texture_data = image2array(texture)
output_data = []
# process color bands
for base_band, texture_band in zip(base_data, texture_data):
# multilevel dwt
base_band_coeffs = pywt.wavedec2(base_band, wavelet, mode, level)
texture_band_coeffs = pywt.wavedec2(texture_band, wavelet, mode, level)
# average coefficients of base image
output_band_coeffs = [base_band_coeffs[0]] # cA
del base_band_coeffs[0], texture_band_coeffs[0]
# blend details coefficients
for n, (base_band_details, texture_band_details) in enumerate(
zip(base_band_coeffs, texture_band_coeffs)):
blended_details = []
for (base_detail, texture_detail) in zip(base_band_details,
texture_band_details):
if base_gain is not None:
base_detail *= base_gain
if texture_gain is not None:
texture_detail *= texture_gain
# select coeffs with greater energy
blended = numpy.where(abs(base_detail) > abs(texture_detail),
base_detail, texture_detail)
blended_details.append(blended)
base_band_coeffs[n] = texture_band_coeffs[n] = None
output_band_coeffs.append(blended_details)
# multilevel idwt
new_band = pywt.waverec2(output_band_coeffs, wavelet, mode)
output_data.append(new_band)
del new_band, base_band_coeffs, texture_band_coeffs
del base_data, texture_data
output_data = numpy.array(output_data)
return array2image(output_data, base.mode)
def wavelet_denoise(array, wavelet, threshold, levels, thrmode="hard"):
""" Wavelet filtering of a 2d array using Pywt library. First a 2d discrete
wavelet transform is performed followed by a hard or soft thresholding of
the coefficients.
Parameters
----------
array : array_like
Input 2d array or image.
wavelet : Pywt wavelet object
Pywt wavelet object. Example: pywt.Wavelet('bior2.2')
threshold : int
Threshold on the wavelet coefficients.
levels : int
Wavelet levels to be used.
thrmode : {'hard','soft'}, optional
Mode of thresholding of the wavelet coefficients.
Returns
-------
array_filtered : array_like
Filtered array with the same dimensions and size of the input one.
Notes
-----
Full documentation of the PyWavelets package here:
http://www.pybytes.com/pywavelets/
For information on the builtin wavelets and how to use them:
http://www.pybytes.com/pywavelets/regression/wavelet.html
http://wavelets.pybytes.com
"""
if not array.ndim == 2:
raise TypeError("Input array is not a frame or 2d array")
WC = pywt.wavedec2(array, wavelet, level=levels)
if thrmode == "hard":
NWC = map(lambda x: pywt.thresholding.hard(x, threshold), WC)
elif thrmode == "soft":
NWC = map(lambda x: pywt.thresholding.soft(x, threshold), WC)
else:
raise ValueError("Threshold mode not recognized")
array_filtered = pywt.waverec2(NWC, wavelet)
return array_filtered
def whash(image, hash_size = 8, image_scale = None, mode = 'haar', remove_max_haar_ll = True):
"""
Wavelet Hash computation.
based on https://www.kaggle.com/c/avito-duplicate-ads-detection/
@image must be a PIL instance.
@hash_size must be a power of 2 and less than @image_scale.
@image_scale must be power of 2 and less than image size. By default is equal to max
power of 2 for an input image.
@mode (see modes in pywt library):
'haar' - Haar wavelets, by default
'db4' - Daubechies wavelets
@remove_max_haar_ll - remove the lowest low level (LL) frequency using Haar wavelet.
"""
import pywt
if image_scale is not None:
assert image_scale & (image_scale - 1) == 0, "image_scale is not power of 2"
else:
image_scale = 2**int(numpy.log2(min(image.size)))
ll_max_level = int(numpy.log2(image_scale))
level = int(numpy.log2(hash_size))
assert hash_size & (hash_size-1) == 0, "hash_size is not power of 2"
assert level <= ll_max_level, "hash_size in a wrong range"
dwt_level = ll_max_level - level
image = image.convert("L").resize((image_scale, image_scale), Image.ANTIALIAS)
pixels = numpy.array(image.getdata(), dtype=numpy.float).reshape((image_scale, image_scale))
pixels /= 255
# Remove low level frequency LL(max_ll) if @remove_max_haar_ll using haar filter
if remove_max_haar_ll:
coeffs = pywt.wavedec2(pixels, 'haar', level = ll_max_level)
coeffs = list(coeffs)
coeffs[0] *= 0
pixels = pywt.waverec2(coeffs, 'haar')
# Use LL(K) as freq, where K is log2(@hash_size)
coeffs = pywt.wavedec2(pixels, mode, level = dwt_level)
dwt_low = coeffs[0]
# Substract median and compute hash
med = numpy.median(dwt_low)
diff = dwt_low > med
return ImageHash(diff)
def get_wavelet_H(wave_image):
'''
inverse wavelet transform of the wavelets image
'''
if len(numpy.shape(wave_image)) == 2:
wave_image = numpy.reshape(wave_image,numpy.shape(wave_image)+(1,),order='F')
else:
pass
L = numpy.shape(wave_image)[-1]
new_image = numpy.empty_like(wave_image,dtype=dtype)
for jj in xrange(0, L):
N = numpy.shape(wave_image[:,:,jj])[0]
tmp_image = numpy.abs(wave_image[:,:,jj])
# new_image = numpy.empty_like(wave_image)
p0= tmp_image[N/2:, 0:N/2]
p1 = tmp_image[0:N/2, N/2:]
p2 = tmp_image[N/2:, N/2:]
cA = tmp_image[0:N/2, 0:N/2]
cH3 = (p0,p1,p2)
N = numpy.shape(cA)[0]
p0= cA[N/2:, 0:N/2]
p1 = cA[0:N/2, N/2:]
p2 = cA[N/2:, N/2:]
cH2 = (p0,p1,p2)
cA = cA[0:N/2, 0:N/2]
N = numpy.shape(cA)[0]
p0= cA[N/2:, 0:N/2]
p1 = cA[0:N/2, N/2:]
p2 = cA[N/2:, N/2:]
cH1 = (p0,p1,p2)
cA = cA[0:N/2, 0:N/2]
new_image[:,:,jj] = pywt.waverec2((cA,cH1, cH2, cH3),'haar')
# new_image[:,:,jj] = gasp.idwt2([cA,[cH1, cH2, cH3]],'haar')
##############
return new_image
def get_cascade_with_wavelets(rainfield, nrLevels=6, wavelet = 'db4', doplot=0):
rainfieldSize = rainfield.shape
# Decompose rainfall field
coeffsRain = pywt.wavedec2(rainfield, wavelet, level=nrLevels)
if (doplot==1):
vmaxorig = rainfield.max()
ncols = 3
nrows = np.ceil(nrLevels/ncols) + 1
plt.subplot(nrows,ncols,1)
plt.title('Original image')
plt.imshow(rainfield,interpolation='none',vmin=0,vmax=vmaxorig)
cbar = plt.colorbar()
# cbar.set_label('dBZ')
plt.axis('off')
recomposedCascade = pywt.waverec2(coeffsRain, wavelet)
plt.subplot(nrows,ncols,2)
plt.title('Reconstructed field')
plt.imshow(recomposedCascade,interpolation='none',vmin=0,vmax=vmaxorig)
cbar=plt.colorbar()
plt.axis('off')
for nl in xrange(nrLevels):
plt.subplot(nrows,ncols,ncols+1+nl)
# plt.title('Level %i (%i km)' % (nl, CentreWaveLengths[nl]))
nlevel = coeffsRain[nl][0].copy()
print(nlevel.shape)
vmax = np.percentile(nlevel,99.0)
vmin = np.percentile(nlevel,1.0)
plt.imshow(nlevel,vmin=vmin,vmax=vmax,interpolation='none')
cbar = plt.colorbar()
plt.axis('off')
plt.show()
return Cascade