def runTester(pathToModels, testModel):
global fHandle
global sbmlStr
global JarnacStr
print "Starting Tester on ", testModel
sys.path.append(pathToModels)
#print 'Version: ', rrPython.getVersion()
#print 'Build Date: ', rrPython.getBuildDate()
#print 'Copyright Message: ', rrPython.getCopyright()
fHandle = open(pathToModels + testModel, 'r')
sbmlStr = loadSBMLModelFromTestFile()
JarnacStr = loadJarnacModelFromTestFile()
print "\n", "Info:" + "\n"
rrPython.enableLogging()
info = rrPython.getInfo()
for item in info:
print item
print
# Load any initialization actions
testId = jumpToNextTest()
if testId == '[INITIALIZATION]':
testId = jumpToNextTest()
while testId != '[END_INITIALIZATION]':
if functions.has_key(testId):
func = functions[testId]
func(testId)
else:
print 'No initialization function found for ' + testId
testId = jumpToNextTest()
# Load the model into RoadRunner
if rrPython.loadSBML(sbmlStr) == False:
print 'Failed to load model'
print rrPython.getLastError()
sys.exit(-1)
print rrPython.getuCC('J1', 'k1')
print rrPython.getuCC('J1', 'k_1')
print rrPython.getuCC('J1', 'k2')
print rrPython.getuCC('J1', 'k_2')
print rrPython.getuCC('J1', 'k3')
print rrPython.getuCC('J1', 'k_3')
print rrPython.getuCC('J1', 'k4')
print rrPython.getuCC('J1', 'k_4')
# Now start the tests proper
testId = jumpToNextTest()
if testId == '[START_TESTS]':
testId = jumpToNextTest()
while testId != '[END_TESTS]':
if functions.has_key(testId):
func = functions[testId]
func(testId)
else:
print string.ljust(testId, rpadding), 'NO TEST'
testId = jumpToNextTest()
else:
print 'No Tests found'
scriptTests()
import rrPython
import os
rrPython.enableLogging()
rrPython.setTempFolder('C:\\RRTemp')
os.chdir('C:\\RoadRunner\\bin')
result = rrPython.loadSBMLFromFile('C:\\RoadRunner\\Models\\feedback.xml')
print result
simulation = rrPython.simulate()
print simulation
#insert known results, compare
PythonTestResults = open('C:\\RoadRunner\\PythonTestResults.csv','a')
writer = csv.writer(PythonTestResults)
writevar = function + '=' + result
writer.writerow([writevar])
PythonTestResults.close()
def runTester (pathToModels, testModel):
global fHandle
global sbmlStr
global JarnacStr
print "Starting Tester on ", testModel
sys.path.append (pathToModels)
#print 'Version: ', rrPython.getVersion()
#print 'Build Date: ', rrPython.getBuildDate()
#print 'Copyright Message: ', rrPython.getCopyright()
fHandle = open (pathToModels + testModel, 'r')
sbmlStr = loadSBMLModelFromTestFile ()
JarnacStr = loadJarnacModelFromTestFile ()
print "\n", "Info:"+ "\n"
rrPython.enableLogging()
info = rrPython.getInfo()
for item in info:
print item
print
# Load any initialization actions
testId = jumpToNextTest()
if testId == '[INITIALIZATION]':
testId = jumpToNextTest ()
while testId != '[END_INITIALIZATION]':
if functions.has_key(testId):
func = functions[testId]
func(testId)
else:
print 'No initialization function found for ' + testId
testId = jumpToNextTest()
# Load the model into RoadRunner
if rrPython.loadSBML(sbmlStr) == False:
print 'Failed to load model'
print rrPython.getLastError()
sys.exit(-1)
print rrPython.getuCC ('J1', 'k1')
print rrPython.getuCC ('J1', 'k_1')
print rrPython.getuCC ('J1', 'k2')
print rrPython.getuCC ('J1', 'k_2')
print rrPython.getuCC ('J1', 'k3')
print rrPython.getuCC ('J1', 'k_3')
print rrPython.getuCC ('J1', 'k4')
print rrPython.getuCC ('J1', 'k_4')
# Now start the tests proper
testId = jumpToNextTest()
if testId == '[START_TESTS]':
testId = jumpToNextTest()
while testId != '[END_TESTS]':
if functions.has_key(testId):
func = functions[testId]
func(testId)
else:
print string.ljust (testId, rpadding), 'NO TEST'
testId = jumpToNextTest()
else:
print 'No Tests found'
scriptTests()
import rrPython
import timeit
import cmd
print rrPython.getCopyright()
modelPath = 'R:\\roadrunnerwork\\Models\\BorisEJB.xml'
rrPython.setTempFolder('R:\\rrTemp')
rrPython.enableLogging()
print 'Temp folder is:' + rrPython.getTempFolder()
rrPython.setLogLevel('Info')
level = rrPython.getLogLevel()
print 'Log level is ' + str(level)
rrPython.loadSBMLFromFile(modelPath)
simulations = 10
start_Time = 0
end_Time = 2
number_of_points = 1000
rrPython.setTimeStart(start_Time)
rrPython.setTimeEnd(end_Time)
rrPython.setNumPoints(number_of_points)
t = timeit.Timer('rrPython.simulate()','import rrPython')
totalTime = t.timeit(number = simulations)
meanTime = totalTime/simulations
print 'Average simulation time: ' + str(meanTime) + ' seconds'
