Python get_gsms_transferred Examples

Example #1

File: test_rp_transfer.py Project: bcgsc/rsempipeline

 def test_get_gsms_transferred(self, mock_exists):
     mock_exists.return_value = True
     # known issue, mock_open doesn't implement iteration,
     # http://stackoverflow.com/questions/24779893/customizing-unittest-mock-mock-open-for-iteration
     # cannot successfully implement what is suggested in this thread, but
     # my such hack works
     m = mock.mock_open()
     m.return_value.__iter__.return_value = [
         '# 15-07-17 09:04:38',
         'rsem_output/GSE34736/homo_sapiens/GSM854343',
         'rsem_output/GSE34736/homo_sapiens/GSM854344'
     ]
     with mock.patch('rsempipeline.core.rp_transfer.open', m):
         self.assertEqual(RP_T.get_gsms_transferred('transferred_GSMs.txt'),
                          ['rsem_output/GSE34736/homo_sapiens/GSM854343',
                           'rsem_output/GSE34736/homo_sapiens/GSM854344'])

Example #2

 def test_get_gsms_transferred(self, mock_exists):
     mock_exists.return_value = True
     # known issue, mock_open doesn't implement iteration,
     # http://stackoverflow.com/questions/24779893/customizing-unittest-mock-mock-open-for-iteration
     # cannot successfully implement what is suggested in this thread, but
     # my such hack works
     m = mock.mock_open()
     m.return_value.__iter__.return_value = [
         '# 15-07-17 09:04:38',
         'rsem_output/GSE34736/homo_sapiens/GSM854343',
         'rsem_output/GSE34736/homo_sapiens/GSM854344'
     ]
     with mock.patch('rsempipeline.core.rp_transfer.open', m):
         self.assertEqual(RP_T.get_gsms_transferred('transferred_GSMs.txt'),
                          [
                              'rsem_output/GSE34736/homo_sapiens/GSM854343',
                              'rsem_output/GSE34736/homo_sapiens/GSM854344'
                          ])

Example #3

 def test_get_gsms_transferred_record_file_not_exist(self):
     self.assertEqual(
         RP_T.get_gsms_transferred('nonexistent_transferred_GSMs.txt'), [])

Example #4

File: test_rp_transfer.py Project: bcgsc/rsempipeline

 def test_get_gsms_transferred_record_file_not_exist(self):
     self.assertEqual(RP_T.get_gsms_transferred('nonexistent_transferred_GSMs.txt'), [])