def add_user(email, name='Paul Anderson'):
"""Setup a new user for the database with a default institute."""
connect('variantDatabase', host='localhost', port=27017)
institute = Institute.objects.first()
Whitelist(email=email).save()
# create a default user
user = User(email=email,
name=name,
roles=['admin'],
institutes=[institute])
user.save()
def init():
"""Initialize Scout database with an admin user account."""
admin_email = request.form['email']
admin_name = request.form.get('name', admin_email)
admin_institutes = request.form.getlist('institutes')
try:
logger.debug('whitelist the email account')
whitelist_obj = Whitelist(email=admin_email)
whitelist_obj.save()
except NotUniqueError:
logger.debug('email already whitelisted')
try:
logger.debug('setup the Scout admin account')
user_obj = User(email=admin_email, name=admin_name,
institutes=admin_institutes, roles=['admin'])
user_obj.save()
except NotUniqueError:
logger.debug('user account already created')
return jsonify(success=False)
return jsonify(**prepare_json(user_obj.to_mongo()))
def init(self, admin_mail=None, admin_name=None, admin_institutes=None):
"""Initialize Scout database with an admin user account."""
admin_config = self.config["scout"]["admin"]
admin_mail = admin_mail or admin_config["email"]
admin_name = admin_name or admin_config.get("name")
admin_institutes = admin_institutes or admin_config.get("institutes")
try:
logger.debug("whitelist the email account")
whitelist_obj = Whitelist(email=admin_mail)
whitelist_obj.save()
except NotUniqueError:
logger.debug("email already whitelisted")
try:
logger.debug("setup the Scout admin account")
user_obj = User(email=admin_mail, name=admin_name, institutes=(admin_institutes or []), roles=["admin"])
user_obj.save()
except NotUniqueError:
logger.debug("user account already created")
return None
return prepare_json(user_obj.to_mongo())