def handle(self, *args, **options):
"""transfer project"""
projects_to_process = options['projects']
family_id = options['family_id']
if projects_to_process:
projects = Project.objects.filter(Q(name__in=projects_to_process) | Q(guid__in=projects_to_process))
logging.info("Processing %s projects" % len(projects))
else:
projects = Project.objects.all()
logging.info("Processing all %s projects" % len(projects))
success = {}
error = {}
for project in tqdm(projects, unit=" projects"):
logger.info("Project: " + project.name)
try:
updated_saved_variant_guids = update_project_saved_variant_json(project, family_id=family_id)
success[project.name] = len(updated_saved_variant_guids)
logger.info(u'Updated {0} variants for project {1}'.format(len(updated_saved_variant_guids), project.name))
except Exception as e:
traceback_message = traceback.format_exc()
logger.error(traceback_message)
logger.error(u'Error in project {0}: {1}'.format(project.name, e))
error[project.name] = e
logger.info("Done")
logger.info("Summary: ")
for k, v in success.items():
if v > 0:
logger.info(u" {0}: Updated {1} variants".format(k, v))
if len(error):
logger.info(u"{0} failed projects".format(len(error)))
for k, v in error.items():
logger.info(u" {0}: {1}".format(k, v))
def handle(self, *args, **options):
"""transfer project"""
projects_to_process = options['projects']
family_id = options['family_id']
if projects_to_process:
projects = Project.objects.filter(Q(name__in=projects_to_process) | Q(guid__in=projects_to_process))
logging.info("Processing %s projects" % len(projects))
else:
projects = Project.objects.filter(deprecated_project_id__isnull=False)
logging.info("Processing all %s projects" % len(projects))
success = {}
error = {}
for project in tqdm(projects, unit=" projects"):
logger.info("Project: " + project.name)
try:
updated_saved_variant_guids = update_project_saved_variant_json(project, family_id=family_id)
success[project.name] = len(updated_saved_variant_guids)
logger.info('Updated {0} variants for project {1}'.format(len(updated_saved_variant_guids), project.name))
except Exception as e:
traceback_message = traceback.format_exc()
logger.error(traceback_message)
logger.error('Error in project {0}: {1}'.format(project.name, e))
error[project.name] = e
logger.info("Done")
logger.info("Summary: ")
for k, v in success.items():
if v > 0:
logger.info(" {0}: Updated {1} variants".format(k, v))
if len(error):
logger.info("{0} failed projects".format(len(error)))
for k, v in error.items():
logger.info(" {0}: {1}".format(k, v))
def update_saved_variant_json(request, project_guid):
project = get_project_and_check_permissions(project_guid,
request.user,
permission_level=CAN_EDIT)
updated_saved_variant_guids = update_project_saved_variant_json(project)
return create_json_response(
{variant_guid: None
for variant_guid in updated_saved_variant_guids})
def update_saved_variant_json(request, project_guid):
project = get_project_and_check_permissions(project_guid,
request.user,
can_edit=True)
reset_cached_search_results(project)
updated_saved_variant_guids = update_project_saved_variant_json(project)
return create_json_response(
{variant_guid: None
for variant_guid in updated_saved_variant_guids})
def update_saved_variant_json(request, project_guid):
project = get_project_and_check_permissions(project_guid, request.user, can_edit=True)
reset_cached_search_results(project)
try:
updated_saved_variant_guids = update_project_saved_variant_json(project, user=request.user)
except Exception as e:
logger.error('Unable to reset saved variant json for {}: {}'.format(project_guid, e))
updated_saved_variant_guids = []
return create_json_response({variant_guid: None for variant_guid in updated_saved_variant_guids})
def update_saved_variant_json(request, project_guid):
project = get_project_and_check_permissions(project_guid, request.user, permission_level=CAN_EDIT)
updated_saved_variant_guids = update_project_saved_variant_json(project)
return create_json_response({variant_guid: None for variant_guid in updated_saved_variant_guids})