def run(self):
try:
_build_ext.run(self)
except CompileError:
warn('Failed to build extension modules')
import traceback
print(traceback.format_exc(), file=sys.stderr)
def run(self):
if not self.dry_run:
import numpy
import bohrium_api
for ext in self.extensions:
ext.include_dirs.extend([numpy.get_include(), bohrium_api.get_include()])
setup_build_ext.run(self)
def run(self):
inst_gdal_version = self.get_gdal_config('version')
if inst_gdal_version != GDAL_VERSION:
raise GDALConfigError('Version mismatch %s != %s' % (
inst_gdal_version, GDAL_VERSION))
build_ext.run(self)
def run(self):
"""Run extension builder."""
if "%x" % sys.maxsize != '7fffffffffffffff':
raise DistutilsPlatformError("%s require 64-bit operating system" %
SETUP_METADATA["packages"])
if "z" not in self.libraries:
zcmd = ['bash', '-c', 'cd ' + ZLIBDIR + ' && ( test Makefile -nt'
' configure || bash ./configure --static ) && make -f '
'Makefile.pic PIC']
spawn(cmd=zcmd, dry_run=self.dry_run)
self.extensions[0].extra_objects.extend(
path_join("third-party", "zlib", bn + ".lo") for bn in [
"adler32", "compress", "crc32", "deflate", "gzclose",
"gzlib", "gzread", "gzwrite", "infback", "inffast",
"inflate", "inftrees", "trees", "uncompr", "zutil"])
if "bz2" not in self.libraries:
bz2cmd = ['bash', '-c', 'cd ' + BZIP2DIR + ' && make -f '
'Makefile-libbz2_so all']
spawn(cmd=bz2cmd, dry_run=self.dry_run)
self.extensions[0].extra_objects.extend(
path_join("third-party", "bzip2", bn + ".o") for bn in [
"blocksort", "huffman", "crctable", "randtable",
"compress", "decompress", "bzlib"])
_build_ext.run(self)
def run(self):
"""Overridden method. Runs the build.
Library directories and include directories are checked here, first.
"""
# Check we can find the OSKAR library.
d = self.dir_contains('oskar.', self.library_dirs)
if not d:
raise RuntimeError(
"Could not find OSKAR library. "
"Check that OSKAR has already been installed on this system, "
"and set the library path to build_ext "
"using -L or --library-dirs")
self.rpath.append(d)
self.libraries.append('oskar')
# Check we can find the OSKAR headers.
h = self.find_file(join('oskar', 'oskar_version.h'), self.include_dirs)
if not h:
raise RuntimeError(
"Could not find oskar/oskar_version.h. "
"Check that OSKAR has already been installed on this system, "
"and set the include path to build_ext "
"using -I or --include-dirs")
self.include_dirs.insert(0, dirname(h))
self.include_dirs.insert(0, get_include())
# Check the version of OSKAR is compatible.
version = self.get_oskar_version(h)
if not version.startswith(oskar_compatibility_version):
raise RuntimeError(
"The version of OSKAR found is not compatible with oskarpy. "
"Found OSKAR %s, but require OSKAR %s." % (
version, oskar_compatibility_version)
)
build_ext.run(self)
def run(self):
# Run others commands
self.run_command("scons")
self.run_command("cmake")
# Add lib_dirs and include_dirs in packages
# Copy the directories containing the files generated
# by scons and the like.
if is_conda_build():
print('Building directly with conda. Skip the bin, include and lib dirs.')
return old_build_ext.run(self)
for d in (self.distribution.lib_dirs,
self.distribution.inc_dirs,
self.distribution.bin_dirs,
# self.distribution.share_dirs,
):
if (not d or self.inplace == 1):
continue
if (not os.path.exists(self.build_lib)):
self.mkpath(self.build_lib)
for (name, dir) in d.items():
copy_data_tree(dir, pj(self.build_lib, name))
return old_build_ext.run(self)
def run(self):
# Import numpy here, only when headers are needed
import numpy
# Add numpy headers to include_dirs
self.include_dirs.append(numpy.get_include())
# Call original build_ext command
build_ext.run(self)
def run(self):
# Bail out if we don't have the Python include files
include_dir = get_python_inc()
if not os.path.isfile(os.path.join(include_dir, "Python.h")):
print("You will need the Python headers to compile this extension.")
sys.exit(1)
# Print a warning if pkg-config is not available or does not know about igraph
if buildcfg.use_pkgconfig:
detected = buildcfg.detect_from_pkgconfig()
else:
detected = False
# Check whether we have already compiled igraph in a previous run.
# If so, it should be found in igraphcore/include and
# igraphcore/lib
if os.path.exists("igraphcore"):
buildcfg.use_built_igraph()
detected = True
# Download and compile igraph if the user did not disable it and
# we do not know the libraries from pkg-config yet
if not detected:
if buildcfg.download_igraph_if_needed and is_unix_like():
detected = buildcfg.download_and_compile_igraph()
if detected:
buildcfg.use_built_igraph()
else:
sys.exit(1)
# Fall back to an educated guess if everything else failed
if not detected:
buildcfg.use_educated_guess()
# Replaces library names with full paths to static libraries
# where possible. libm.a is excluded because it caused problems
# on Sabayon Linux where libm.a is probably not compiled with
# -fPIC
if buildcfg.static_extension:
buildcfg.replace_static_libraries(exclusions=["m"])
# Prints basic build information
buildcfg.print_build_info()
ext = first(extension for extension in self.extensions
if extension.name == "igraph._igraph")
buildcfg.configure(ext)
# Run any pre-build hooks
for hook in buildcfg.pre_build_hooks:
hook(self)
# Run the original build_ext command
build_ext.run(self)
# Run any post-build hooks
for hook in buildcfg.post_build_hooks:
hook(self)
def run(self):
try:
self.generate_c_file()
except DistutilsPlatformError:
if os.path.exists("polycomp/speedups.c"):
print("Found existing C file, ignoring errors.")
else:
raise
build_ext.run(self)
def run(self):
try:
build_ext.run(self)
except Exception as e:
warnings.warn('''
Unable to build speedups module, defaulting to pure Python. Note
that the pure Python version is more than fast enough in most cases
%r
''' % e)
def run(self):
return_code = subprocess.call(['./build_libpg_query.sh'])
if return_code:
sys.stderr.write('''
An error occurred during extension building.
Make sure you have bison and flex installed on your system.
''')
sys.exit(return_code)
build_ext.run(self)
def run(self):
build_ext.run(self)
cmd = [sys.executable, os.path.join(here_dir, 'build.py')]
spawn(cmd, dry_run=self.dry_run)
# HACK: this makes sure the library file (which is large) is only
# included in binary builds, not source builds.
self.distribution.package_data = {
"libqemu.binding": ["*.dll", "*.so", "*.dylib"]
}
def run(self):
try:
build_ext.run(self)
except Exception:
e = sys.exc_info()[1]
sys.stdout.write('%s\n' % str(e))
warnings.warn(self.warning_message +
"Extension modules" +
"There was an issue with your platform configuration - see above.")
def run(self):
self._run_config_if_needed()
self._check_prefix_modified()
self._configure_compiler()
log.info('include dirs: %r', self.include_dirs)
log.info('library dirs: %r', self.library_dirs)
_build_ext.run(self)
def run(self):
build_ext.run(self)
cmd = [sys.executable, os.path.join(here_dir, 'ffi', 'build.py')]
spawn(cmd, dry_run=self.dry_run)
# HACK: this makes sure the library file (which is large) is only
# included in binary builds, not source builds.
self.distribution.package_data = {
"llvmlite.binding": get_library_files(),
}
def run(self):
BuildExtCommand.run(self)
# If we are not a light build we want to also execute build_js as
# part of our build_ext pipeline. Because setuptools subclasses
# this thing really oddly we cannot use sub_commands but have to
# manually invoke it here.
if not IS_LIGHT_BUILD:
self.run_command('build_js')
def run(self):
# First, we build the standard extensions.
_build_ext.run(self)
# Then, we build the driver if required.
if not self.skip_driver:
self.real_build_lib = os.path.realpath(self.build_lib)
if platform.system().lower() == "linux":
self._build_linux_driver()
elif platform.system().lower() == "darwin":
self._build_darwin_driver()
def run(self):
self.distribution.fetch_build_eggs(numpy_requirement)
numpy_incl = pkg_resources.resource_filename('numpy', 'core/include')
for ext in self.extensions:
if (hasattr(ext, 'include_dirs') and
numpy_incl not in ext.include_dirs):
ext.include_dirs.append(numpy_incl)
build_ext.run(self)
def run(self):
self.generate_protoc()
try:
self.generate_c_file()
except DistutilsPlatformError:
if os.path.exists('imposm/cache/tc.c'):
print 'Found existing C file. Ignoring previous error.'
else:
raise
build_ext.run(self)
def run(self):
try:
subprocess.check_call("cd pachi_py; mkdir -p build && cd build && cmake ../pachi && make -j4", shell=True)
except subprocess.CalledProcessError as e:
print("Could not build pachi-py: %s" % e)
raise
# Prevent numpy from trying to setup
__builtins__.__NUMPY_SETUP__ = False
import numpy
self.include_dirs.append(numpy.get_include())
_build_ext.run(self)
def run(self):
if HAS_CYTHON:
print('*** NOTE: Found Cython, extension files will be '
'transpiled if this is an install invocation.',
file=sys.stderr)
else:
print('*** WARNING: Cython not found, assuming cythonized '
'C files available for compilation.',
file=sys.stderr)
_build_ext.run(self)
def run(self):
# FIXME - both of these should be in the build directory.
configpath = os.path.join('src', 'config.h')
paramspath = os.path.join('configutils', 'params.cache')
if not os.path.exists(configpath) or not os.path.exists(paramspath):
self.run_command('config')
params = read_params()
self.use_param(params, 'include_dirs')
self.use_param(params, 'library_dirs')
self.use_param(params, 'libraries')
du_build_ext.run(self)
def run(self):
import pkg_resources
# At this point we can be sure pip has already installed numpy
numpy_incl = pkg_resources.resource_filename('numpy', 'core/include')
for ext in self.extensions:
if (hasattr(ext, 'include_dirs') and
numpy_incl not in ext.include_dirs):
ext.include_dirs.append(numpy_incl)
_build_ext.run(self)
def run(self):
# According to
# https://pip.pypa.io/en/stable/reference/pip_install.html#installation-order
# at this point we can be sure pip has already installed numpy
numpy_incl = pkg_resources.resource_filename('numpy', 'core/include')
for ext in self.extensions:
if (hasattr(ext, 'include_dirs') and
numpy_incl not in ext.include_dirs):
ext.include_dirs.append(numpy_incl)
build_ext.run(self)
def run(self):
# For extensions that require 'numpy' in their include dirs,
# replace 'numpy' with the actual paths
import numpy
np_include = numpy.get_include()
for extension in self.extensions:
if 'numpy' in extension.include_dirs:
idx = extension.include_dirs.index('numpy')
extension.include_dirs.insert(idx, np_include)
extension.include_dirs.remove('numpy')
build_ext.run(self)
def run(self):
"""Run the command"""
if not self.with_mysql_capi:
return
if os.name == 'nt':
build_ext.run(self)
else:
self.real_build_extensions = self.build_extensions
self.build_extensions = lambda: None
build_ext.run(self)
self.fix_compiler()
self.real_build_extensions()
def run(self):
# If we were asked to build any C/C++ libraries, add the directory
# where we built them to the include path. (It's already on the library
# path.)
if self.distribution.has_c_libraries():
self.run_command('build_clib')
build_clib = self.get_finalized_command('build_clib')
for key, value in build_clib.build_args.items():
for ext in self.extensions:
if not hasattr(ext, key) or getattr(ext, key) is None:
setattr(ext, key, value)
else:
getattr(ext, key).extend(value)
build_ext.run(self)
def run(self):
if "z" and "bz2" not in self.libraries:
zcmd = ['bash', '-c', 'cd ' + ZLIBDIR + ' && ( test Makefile -nt'
' configure || bash ./configure --static ) && make -f '
'Makefile.pic PIC']
spawn(cmd=zcmd, dry_run=self.dry_run)
bz2cmd = ['bash', '-c', 'cd ' + BZIP2DIR + ' && make -f '
'Makefile-libbz2_so all']
spawn(cmd=bz2cmd, dry_run=self.dry_run)
else:
for ext in self.extensions:
ext.extra_objects = []
_build_ext.run(self)
def run(self):
# We write a header file containing everything we have discovered by
# inspecting the libraries which exist. This is the main mechanism we
# use to detect differenced between FFmpeg anf Libav.
include_dir = os.path.join(self.build_temp, "include")
pyav_dir = os.path.join(include_dir, "pyav")
try:
os.makedirs(pyav_dir)
except OSError as e:
if e.errno != errno.EEXIST:
raise
header_path = os.path.join(pyav_dir, "config.h")
print("writing", header_path)
with open(header_path, "w") as fh:
fh.write("#ifndef PYAV_COMPAT_H\n")
fh.write("#define PYAV_COMPAT_H\n")
for k, v in config_macros:
fh.write("#define %s %s\n" % (k, v))
fh.write("#endif\n")
self.include_dirs = self.include_dirs or []
self.include_dirs.append(include_dir)
self.run_command("cythonize")
return build_ext.run(self)
def run(self): """Iterates through the list of Extension packages and reorders them, so that the Library's come first """ # here, we simply re-order the extensions such that we get the Library first self.extensions = [ext for ext in self.extensions if isinstance(ext, Library)] + [ext for ext in self.extensions if not isinstance(ext, Library)] # call the base class function return _build_ext.run(self)
def run(self):
def compile_hts():
subprocess.check_call(['make', 'libhts.a'])
self.execute(compile_hts, [], 'Compiling htslib using Makefile')
build_ext.run(self)
def run(self):
"""Overridden method. Runs the build.
Library directories and include directories are checked here, first.
"""
# Check we can find the OSKAR library.
# For some reason, run() is sometimes called again after the build
# has already happened.
# Make sure not to fail the check the second time.
if not self._checked_lib:
self._checked_lib = True
if os.getenv('OSKAR_LIB_DIR'):
self.library_dirs.append(os.getenv('OSKAR_LIB_DIR'))
if platform.system() == 'Windows':
self.library_dirs.append('C:\\Program Files\\OSKAR\\lib')
for i, test_dir in enumerate(self.library_dirs):
self.library_dirs[i] = test_dir.strip('\"')
directory = self.dir_contains('oskar.', self.library_dirs)
if not directory:
raise RuntimeError(
"Could not find OSKAR library. "
"Check that OSKAR has already been installed on "
"this system, and either set the environment variable "
"OSKAR_LIB_DIR, or set the library path to build_ext "
"using -L or --library-dirs")
if platform.system() != 'Windows':
self.rpath.append(directory)
self.libraries.append('oskar')
self.libraries.append('oskar_apps')
self.libraries.append('oskar_binary')
self.libraries.append('oskar_settings')
if self.dir_contains('oskar_ms.', self.library_dirs):
self.libraries.append('oskar_ms')
# Check we can find the OSKAR headers.
if not self._checked_inc:
from numpy import get_include
self._checked_inc = True
if os.getenv('OSKAR_INC_DIR'):
self.include_dirs.append(os.getenv('OSKAR_INC_DIR'))
if platform.system() == 'Windows':
self.include_dirs.append('C:\\Program Files\\OSKAR\\include')
header = self.find_file(
os.path.join('oskar', 'oskar_version.h'), self.include_dirs)
if not header:
raise RuntimeError(
"Could not find oskar/oskar_version.h. "
"Check that OSKAR has already been installed on "
"this system, and either set the environment variable "
"OSKAR_INC_DIR, or set the include path to build_ext "
"using -I or --include-dirs")
self.include_dirs.insert(0, os.path.dirname(header))
self.include_dirs.insert(0, get_include())
for i, test_dir in enumerate(self.include_dirs):
self.include_dirs[i] = test_dir.strip('\"')
# Check the version of OSKAR is compatible.
version = self.get_oskar_version(header)
if not version.startswith(OSKAR_COMPATIBILITY_VERSION):
raise RuntimeError(
"The version of OSKAR found is not compatible with "
"oskarpy. Found OSKAR %s, but require OSKAR %s." % (
version, OSKAR_COMPATIBILITY_VERSION)
)
build_ext.run(self)
def run(self):
"""Wrap `run` with `BuildFailed`."""
try:
build_ext.run(self)
except errors.DistutilsPlatformError:
raise BuildFailed()
def run(self):
try:
build_ext.run(self)
except Exception as e:
self._unavailable(e)
self.extensions = [] # avoid copying missing files (it would fail).
def run(self):
pkg_path = os.path.join(module_name, get_platform())
install_vart_pkg(pkg_path, platform.processor())
build_ext.run(self)
overlay_path = os.path.join(self.build_lib, module_name, 'overlays')
resolve_overlay_d(overlay_path)
def run(self):
if not check_dependencies_once():
return
build_ext.run(self)
def run(self):
self.make_libceed_so()
build_ext.run(self)
def run(self):
self.cmake_build()
_build_ext.run(self)
def run(self):
_build_libgraphqlparser()
build_ext.run(self)
def run(self):
try:
build_ext.run(self)
except DistutilsPlatformError:
raise BuildFailed()
def run(self):
self.run_command('DownloadTemplates')
_build_ext.run(self)
def run(self):
import numpy
self.include_dirs.append(numpy.get_include())
build_ext.run(self)
def run(self):
try:
build_ext.run(self)
except DistutilsPlatformError as e:
self._unavailable(e)
def run(self):
os.system('make -C postqe/fortran all')
build_ext.run(self)
def run(self):
if os.name != 'posix': # Windows case
pass
else:
setup_context_cc()
build_ext.run(self)
def run(self):
for package in good_packages:
package.do_custom_build()
return BuildExtCommand.run(self)
def run(self):
build_ext.run(self)
if sys.platform == "win32":
self._copy_windows_dlls()
def run(self):
if self.portage_ext_modules:
_build_ext.run(self)
def run(self):
p = Popen(['make'] + LIB_OBJECTS, cwd=DIR)
p.wait()
if p.returncode != 0:
raise Exception('Could not build %s' % (', '.join(LIB_OBJECTS)))
BuildExt.run(self)
def run(self):
try:
_build_ext.run(self)
except (CCompilerError, DistutilsError, CompileError):
self.warn('\n\n*** Building the extension failed. ***')
def run(self):
# Bail out if we don't have the Python include files
include_dir = get_python_inc()
if not os.path.isfile(os.path.join(include_dir, "Python.h")):
print("You will need the Python headers to compile this extension.")
sys.exit(1)
# Check whether we have already compiled igraph in a previous run.
# If so, it should be found in vendor/build/igraph/include and
# vendor/build/igraph/lib
if os.path.exists(os.path.join("vendor", "build", "igraph")):
buildcfg.use_built_igraph()
detected = True
else:
detected = False
# If igraph is provided as a git submodule, use that
if not detected:
if os.path.isfile(
os.path.join("vendor", "source", "igraph", "configure.ac")
):
detected = buildcfg.compile_igraph_from_vendor_source()
if detected:
buildcfg.use_built_igraph()
else:
sys.exit(1)
# Try detecting with pkg-config if we haven't found the submodule
if not detected:
if buildcfg.use_pkgconfig:
detected = buildcfg.detect_from_pkgconfig()
else:
detected = False
# Download and compile igraph if the user did not disable it and
# we do not know the libraries from pkg-config yet
if not detected:
if buildcfg.download_igraph_if_needed and is_unix_like():
detected = buildcfg.download_and_compile_igraph()
if detected:
buildcfg.use_built_igraph()
else:
sys.exit(1)
# Fall back to an educated guess if everything else failed
if not detected:
buildcfg.use_educated_guess()
# Replaces library names with full paths to static libraries
# where possible. libm.a is excluded because it caused problems
# on Sabayon Linux where libm.a is probably not compiled with
# -fPIC
if buildcfg.static_extension:
buildcfg.replace_static_libraries(exclusions=["m"])
# Prints basic build information
buildcfg.print_build_info()
ext = first(
extension
for extension in self.extensions
if extension.name == "igraph._igraph"
)
buildcfg.configure(ext)
# Run any pre-build hooks
for hook in buildcfg.pre_build_hooks:
hook(self)
# Run the original build_ext command
build_ext.run(self)
# Run any post-build hooks
for hook in buildcfg.post_build_hooks:
hook(self)
def run(self):
self._add_build_settings()
self._convert_abspath_libraries()
_build_ext.run(self)
def run(self):
try:
super(build_ext, self).run()
except TypeError:
# distutils parent class an old style Python class
_build_ext.run(self)
def run(self):
# Compile dffi with cmake using the LLVM provided by LLVM_CONFIG,
# creating a full static library with LLVM inside!
# We then patch the extensions to link with this static library.
# Inspired by https://stackoverflow.com/questions/42585210/extending-setuptools-extension-to-use-cmake-in-setup-py#
# TODO: this is the less painfull and integrated setup I managed to do, if
# someone as a better idea, please let me know :)
LLVM_CONFIG = os.getenv("LLVM_CONFIG")
if LLVM_CONFIG is None:
raise RuntimeError(
"The LLVM_CONFIG environment variable must be set to a valid path to an llvm-config binary!"
)
cwd = os.path.abspath(os.getcwd())
source_dir = os.path.join(this_dir, "../..")
build_temp = os.path.abspath(self.build_temp)
try:
os.makedirs(build_temp)
except OSError as e:
if e.errno != errno.EEXIST or not os.path.isdir(build_temp):
raise
os.chdir(build_temp)
# Use Ninja if it is available
try:
subprocess.check_call(['ninja', '--version'])
use_ninja = True
except:
use_ninja = False
cmake_args = [
'-DLLVM_CONFIG=%s' % LLVM_CONFIG, "-DCMAKE_BUILD_TYPE=release",
"-DDFFI_STATIC_LLVM=ON", "-DPYTHON_BINDINGS=OFF",
"-DBUILD_TESTS=OFF", source_dir
]
if use_ninja:
cmake_args.extend(("-G", "Ninja"))
if platform.system() == "Darwin":
# Compile for both 32 and 64 bits
cmake_args.append("-DCMAKE_OSX_ARCHITECTURES='x86_64;i386'")
subprocess.check_call(['cmake'] + cmake_args)
subprocess.check_call(['cmake', '--build', '.'])
# Get static library path from cmake
# TODO: get encoding from the current environment?
vars_ = subprocess.check_output(['cmake', '-L', '-N',
'.']).decode("utf8")
for v in vars_.split("\n"):
v = v.strip()
if v.startswith("DFFI_STATIC_LLVM_PATH:"):
DFFI_STATIC_LLVM_PATH = v[v.index('=') + 1:]
break
else:
raise RuntimeError(
"unable to get DFFI_STATIC_LLVM_PATH from cmake! This is an internal error, please submit a bug report!"
)
for ext in self.extensions:
ext.include_dirs.append(os.path.join(build_temp, "include"))
ext.extra_link_args.append(DFFI_STATIC_LLVM_PATH)
os.chdir(cwd)
build_ext.run(self)
def run(self):
build_ext.run(self)
cphoc_lib = glob('build/lib.*/cphoc.*.so')[0]
shutil.copy(cphoc_lib, 'pythia/utils/phoc/cphoc.so')
def run(self):
try:
build_ext.run(self)
except DistutilsPlatformError as e:
self._unavailable(e)
self.extensions = [] # avoid copying missing files (it would fail).
def run(self):
build_ext.run(self)
def run(self):
try:
_build_ext.run(self)
except CompileError:
warn('Failed to build extension modules')
def run(self):
self._patch_headers()
_build_ext.run(self)
def run(self):
# generate the git commit include file
get_commit()
_build_ext.run(self)
