def main():
parser = OptionParser(usage=usage)
parser.add_option("-s", "--scale", metavar='scale',
action="store", dest="scale",
default=None, help=help['scale'])
parser.add_option("-f", "--format", metavar='format',
action="store", type='string', dest="format",
default=None, help=help['format'])
parser.add_option("-l", "--list", action="store_true",
dest="list", help=help['list'])
(options, args) = parser.parse_args()
if options.list:
output_writable_meshes()
sys.exit(0)
if len(args) != 2:
parser.print_help()
sys.exit(1)
scale = options.scale
if scale is not None:
try:
try:
scale = float(scale)
except ValueError:
scale = [float(ii) for ii in scale.split(',')]
scale = nm.array(scale, dtype=nm.float64, ndmin=1)
except:
output('bad scale! (%s)' % scale)
parser.print_help()
sys.exit(1)
filename_in, filename_out = args
mesh = Mesh.from_file(filename_in)
if scale is not None:
if len(scale) == 1:
tr = nm.eye(mesh.dim, dtype=nm.float64) * scale
elif len(scale) == mesh.dim:
tr = nm.diag(scale)
else:
raise ValueError('bad scale! (%s)' % scale)
mesh.transform_coors(tr)
io = MeshIO.for_format(filename_out, format=options.format,
writable=True)
output('writing %s...' % filename_out)
mesh.write(filename_out, io=io)
output('...done')
def _parse_val_or_vec(option, name, parser):
if option is not None:
try:
try:
option = float(option)
except ValueError:
option = [float(ii) for ii in option.split(',')]
option = nm.array(option, dtype=nm.float64, ndmin=1)
except:
output('bad %s! (%s)' % (name, option))
parser.print_help()
sys.exit(1)
return option
def _parse_val_or_vec(option, name, parser):
if option is not None:
try:
try:
option = float(option)
except ValueError:
option = [float(ii) for ii in option.split(',')]
option = nm.array(option, dtype=nm.float64, ndmin=1)
except:
output('bad %s! (%s)' % (name, option))
parser.print_help()
sys.exit(1)
return option
def main():
parser = ArgumentParser(description=__doc__,
formatter_class=RawDescriptionHelpFormatter)
parser.add_argument('--version',
action='version',
version='%(prog)s ' + sfepy.__version__)
parser.add_argument('--debug',
action='store_true',
dest='debug',
default=False,
help=helps['debug'])
group = parser.add_argument_group('Output Options')
group.add_argument('-o',
'--output',
metavar='filename',
action='store',
dest='filename',
default=None,
help=helps['filename'])
group.add_argument('--output-dir',
metavar='directory',
action='store',
dest='output_dir',
default=None,
help=helps['output_dir'])
group.add_argument('-n',
'--no-show',
action='store_false',
dest='show',
default=True,
help=helps['no_show'])
group.add_argument('--no-offscreen',
action='store_false',
dest='offscreen',
default=None,
help=helps['no_offscreen'])
group.add_argument('-a',
'--animation',
metavar='<ffmpeg-supported format>',
action='store',
dest='anim_format',
default=None,
help=helps['anim_format'])
group.add_argument('--ffmpeg-options',
metavar='<ffmpeg options>',
action='store',
dest='ffmpeg_options',
default='-framerate 10',
help=helps['ffmpeg_options'])
group = parser.add_argument_group('Data Options')
group.add_argument('--step',
type=int,
metavar='step',
action='store',
dest='step',
default=None,
help=helps['step'])
group.add_argument('--time',
type=float,
metavar='time',
action='store',
dest='time',
default=None,
help=helps['time'])
group.add_argument('-w',
'--watch',
action='store_true',
dest='watch',
default=False,
help=helps['watch'])
group.add_argument('--all',
action='store_true',
dest='all',
default=False,
help=helps['all'])
group.add_argument('--only-names',
metavar='list of names',
action='store',
dest='only_names',
default=None,
help=helps['only_names'])
group.add_argument('-l',
'--list-ranges',
action='store_true',
dest='list_ranges',
default=False,
help=helps['list_ranges'])
group.add_argument('--ranges',
type=str,
metavar='name1,min1,max1:name2,min2,max2:...',
action=ParseRanges,
dest='ranges',
help=helps['ranges'])
group = parser.add_argument_group('View Options')
group.add_argument('-r',
'--resolution',
type=str,
metavar='resolution',
action=ParseResolution,
dest='resolution',
help=helps['resolution'])
group.add_argument('--layout',
metavar='layout',
action='store',
dest='layout',
default='rowcol',
help=helps['layout'])
group.add_argument('--3d',
action='store_true',
dest='is_3d',
default=False,
help=helps['is_3d'])
group.add_argument('--view',
type=str,
metavar='angle,angle[,distance[,focal_point]]',
action=ParseView,
dest='view',
help=helps['view'])
group.add_argument('--roll',
type=float,
metavar='angle',
action='store',
dest='roll',
default=0.0,
help=helps['roll'])
group.add_argument('--parallel-projection',
action='store_true',
dest='parallel_projection',
default=False,
help=helps['parallel_projection'])
group.add_argument('--fgcolor',
metavar='R,G,B',
action='store',
dest='fgcolor',
default='0.0,0.0,0.0',
help=helps['fgcolor'])
group.add_argument('--bgcolor',
metavar='R,G,B',
action='store',
dest='bgcolor',
default='1.0,1.0,1.0',
help=helps['bgcolor'])
group.add_argument('--colormap',
metavar='colormap',
action='store',
dest='colormap',
default='blue-red',
help=helps['colormap'])
group.add_argument('--anti-aliasing',
type=int,
metavar='value',
action='store',
dest='anti_aliasing',
default=None,
help=helps['anti_aliasing'])
group = parser.add_argument_group('Custom Plots Options')
group.add_argument('-b',
'--scalar-bar',
action='store_true',
dest='is_scalar_bar',
default=False,
help=helps['is_scalar_bar'])
group.add_argument('--wireframe',
action='store_true',
dest='is_wireframe',
default=False,
help=helps['is_wireframe'])
group.add_argument('--group-names',
type=str,
metavar='name1,...,nameN:...',
action=ParseGroupNames,
dest='group_names',
help=helps['group_names'])
group.add_argument('--subdomains',
type=str,
metavar='mat_id_name,threshold_limits,single_color',
action=ParseSubdomains,
dest='subdomains_args',
default=None,
help=helps['subdomains'])
group.add_argument('-d', '--domain-specific', type=str,
metavar='"var_name0,function_name0,' \
'par0=val0,par1=val1,...:var_name1,..."',
action=ParseDomainSpecific, dest='domain_specific',
default=None,
help=helps['domain_specific'])
group = parser.add_argument_group('Mayavi Options')
group.add_argument('--scalar-mode',
metavar='mode',
action='store',
dest='scalar_mode',
default='iso_surface',
help=helps['scalar_mode'])
group.add_argument('--vector-mode',
metavar='mode',
action='store',
dest='vector_mode',
default='arrows_norm',
help=helps['vector_mode'])
group.add_argument('-s',
'--scale-glyphs',
type=float,
metavar='scale',
action='store',
dest='rel_scaling',
default=0.05,
help=helps['rel_scaling'])
group.add_argument('--clamping',
action='store_true',
dest='clamping',
default=False,
help=helps['clamping'])
group.add_argument('--opacity',
type=str,
metavar='opacity',
action=ParseOpacity,
dest='opacity',
help=helps['opacity'])
group.add_argument('--rel-text-width',
type=float,
metavar='width',
action='store',
dest='rel_text_width',
default=0.02,
help=helps['rel_text_width'])
parser.add_argument('filenames', nargs='+')
options = parser.parse_args()
if options.debug:
from sfepy.base.base import debug_on_error
debug_on_error()
filenames = options.filenames
options.fgcolor = tuple([float(ii) for ii in options.fgcolor.split(',')])
assert_(len(options.fgcolor) == 3)
options.bgcolor = tuple([float(ii) for ii in options.bgcolor.split(',')])
assert_(len(options.bgcolor) == 3)
can_save = not options.show
# Output dir / file names.
if options.filename is None:
can_save = False
options.filename = 'view.png'
if options.output_dir is None:
options.output_dir = '.'
else:
options.output_dir, options.filename = os.path.split(options.filename)
# Data filtering,
if not options.all:
filter_names = ['node_groups', 'mat_id']
else:
filter_names = []
if options.anim_format is not None:
# Do not call show when saving an animation.
options.show = False
if options.list_ranges:
all_ranges = {}
for ii, filename in enumerate(filenames):
output('%d: %s' % (ii, filename))
file_source = create_file_source(filename)
if (options.step is None) and (options.time is None):
steps, _ = file_source.get_ts_info()
else:
if options.step is not None:
step, _ = file_source.get_step_time(step=options.step)
else:
step, _ = file_source.get_step_time(time=options.time)
steps = [step]
if not len(steps):
steps = [0]
for iis, step in enumerate(steps):
output('%d: step %d' % (iis, step))
file_source.get_step_time(step=step)
source = file_source.create_source()
ranges = get_data_ranges(source, return_only=True)
for key, val in six.iteritems(ranges):
all_ranges.setdefault(key, []).append(val[3:])
if (len(filenames) > 1) or (len(steps) > 1):
output('union of ranges:')
else:
output('ranges:')
for key, ranges in six.iteritems(all_ranges):
aux = nm.array(ranges)
mins = aux[:, [0, 2]].min(axis=0)
maxs = aux[:, [1, 3]].max(axis=0)
output(' items: %s,%e,%e' % (key, mins[0], maxs[0]))
output(' norms: %s,%e,%e' % (key, mins[1], maxs[1]))
else:
if len(filenames) == 1:
filenames = filenames[0]
view = view_file(filenames, filter_names, options)
if can_save:
view.save_image(options.filename)
if options.anim_format is not None:
view.save_animation(options.filename)
view.encode_animation(options.filename, options.anim_format,
options.ffmpeg_options)
def main():
parser = OptionParser(usage=usage, version='%prog ' + sfepy.__version__)
group = OptionGroup(parser, 'Output Options')
group.add_option('-o', '--output', metavar='filename',
action='store', dest='filename',
default=None, help=help['filename'])
group.add_option('--output-dir', metavar='directory',
action='store', dest='output_dir',
default=None, help=help['output_dir'])
group.add_option('-n', '--no-show',
action='store_false', dest='show',
default=True, help=help['no_show'])
group.add_option('', '--no-offscreen',
action='store_false', dest='offscreen',
default=None, help=help['no_offscreen'])
group.add_option('-a', '--animation', metavar='<ffmpeg-supported format>',
action='store', dest='anim_format',
default=None, help=help['anim_format'])
group.add_option('', '--ffmpeg-options', metavar='<ffmpeg options>',
action='store', dest='ffmpeg_options',
default='-r 10 -sameq',
help=help['ffmpeg_options'])
parser.add_option_group(group)
group = OptionGroup(parser, 'Data Options')
group.add_option('--step', type='int', metavar='step',
action='store', dest='step',
default=0, help=help['step'])
group.add_option('-w', '--watch',
action='store_true', dest='watch',
default=False, help=help['watch'])
group.add_option('--all',
action='store_true', dest='all',
default=False, help=help['all'])
group.add_option('--only-names', metavar='list of names',
action='store', dest='only_names',
default=None, help=help['only_names'])
group.add_option('-l', '--list-ranges',
action='store_true', dest='list_ranges',
default=False, help=help['list_ranges'])
group.add_option('--ranges', type='str',
metavar='name1,min1,max1:name2,min2,max2:...',
action='callback', dest='ranges',
callback=parse_ranges, help=help['ranges'])
parser.add_option_group(group)
group = OptionGroup(parser, 'View Options')
group.add_option('-r', '--resolution', type='str', metavar='resolution',
action='callback', dest='resolution',
callback=parse_resolution, help=help['resolution'])
group.add_option('--layout', metavar='layout',
action='store', dest='layout',
default='rowcol', help=help['layout'])
group.add_option('--3d',
action='store_true', dest='is_3d',
default=False, help=help['is_3d'])
group.add_option('--view', type='str',
metavar='angle,angle[,distance[,focal_point]]',
action='callback', dest='view',
callback=parse_view, help=help['view'])
group.add_option('--roll', type='float', metavar='angle',
action='store', dest='roll',
default=0.0, help=help['roll'])
group.add_option('--fgcolor', metavar='R,G,B',
action='store', dest='fgcolor',
default='0.0,0.0,0.0', help=help['fgcolor'])
group.add_option('--bgcolor', metavar='R,G,B',
action='store', dest='bgcolor',
default='1.0,1.0,1.0', help=help['bgcolor'])
group.add_option('--anti-aliasing', type='int', metavar='value',
action='store', dest='anti_aliasing',
default=None, help=help['anti_aliasing'])
parser.add_option_group(group)
group = OptionGroup(parser, 'Custom Plots Options')
group.add_option('-b', '--scalar-bar',
action='store_true', dest='is_scalar_bar',
default=False, help=help['is_scalar_bar'])
group.add_option('', '--wireframe',
action='store_true', dest='is_wireframe',
default=False, help=help['is_wireframe'])
group.add_option('--group-names', type='str', metavar='name1,...,nameN:...',
action='callback', dest='group_names',
callback=parse_group_names, help=help['group_names'])
group.add_option('--subdomains', type='str',
metavar='mat_id_name,threshold_limits,single_color',
action='callback', dest='subdomains_args',
callback=parse_subdomains, default=None,
help=help['subdomains'])
group.add_option('-d', '--domain-specific', type='str',
metavar='"var_name0,function_name0,' \
'par0=val0,par1=val1,...:var_name1,..."',
action='callback', dest='domain_specific',
callback=parse_domain_specific, default=None,
help=help['domain_specific'])
parser.add_option_group(group)
group = OptionGroup(parser, 'Mayavi Options')
group.add_option('--scalar-mode', metavar='mode',
action='store', dest='scalar_mode',
default='iso_surface', help=help['scalar_mode'])
group.add_option('--vector-mode', metavar='mode',
action='store', dest='vector_mode',
default='arrows_norm', help=help['vector_mode'])
group.add_option('-s', '--scale-glyphs', type='float', metavar='scale',
action='store', dest='rel_scaling',
default=0.05, help=help['rel_scaling'])
group.add_option('--clamping',
action='store_true', dest='clamping',
default=False, help=help['clamping'])
group.add_option('--opacity', type='str', metavar='opacity',
action='callback', dest='opacity',
callback=parse_opacity, help=help['opacity'])
group.add_option('--rel-text-width', type='float', metavar='width',
action='store', dest='rel_text_width',
default=0.02, help=help['rel_text_width'])
parser.add_option_group(group)
options, args = parser.parse_args()
if len(args) >= 1:
if len(args) == 1:
filenames = glob.glob(args[0])
filenames.sort()
else:
filenames = args
else:
parser.print_help(),
return
options.fgcolor = tuple([float(ii) for ii in
options.fgcolor.split(',')])
assert_(len(options.fgcolor) == 3)
options.bgcolor = tuple([float(ii) for ii in
options.bgcolor.split(',')])
assert_(len(options.bgcolor) == 3)
# Output dir / file names.
if options.filename is None:
options.filename = 'view.png'
if options.output_dir is None:
options.output_dir = '.'
else:
options.output_dir, options.filename = os.path.split(options.filename)
# Data filtering,
if not options.all:
filter_names = ['node_groups', 'mat_id']
else:
filter_names = []
if options.anim_format is not None:
# Do not call show when saving an animation.
options.show = False
if options.list_ranges:
all_ranges = {}
for ii, filename in enumerate(filenames):
output('%d: %s' % (ii, filename))
file_source = create_file_source(filename)
file_source.set_step(options.step)
for key, val in get_data_ranges(file_source()).iteritems():
all_ranges.setdefault(key, []).append(val[3:])
if len(filenames) > 1:
print 'summary of ranges:'
for key, ranges in all_ranges.iteritems():
aux = nm.array(ranges)
print ' "%s": min(min): %s max(max): %s' % \
(key, aux[:,[0,2]].min(axis=0), aux[:,[1,3]].max(axis=0))
else:
if len(filenames) == 1:
filenames = filenames[0]
view = view_file(filenames, filter_names, options)
if options.anim_format is not None:
view.encode_animation(options.filename, options.anim_format,
options.ffmpeg_options)
def main():
parser = OptionParser(usage=usage)
parser.add_option("-s", "--scale", metavar="scale", action="store", dest="scale", default=None, help=help["scale"])
parser.add_option(
"-f",
"--format",
metavar="format",
action="store",
type="string",
dest="format",
default=None,
help=help["format"],
)
parser.add_option("-l", "--list", action="store_true", dest="list", help=help["list"])
(options, args) = parser.parse_args()
if options.list:
output_writable_meshes()
sys.exit(0)
if len(args) != 2:
parser.print_help()
sys.exit(1)
scale = options.scale
if scale is not None:
try:
try:
scale = float(scale)
except ValueError:
scale = [float(ii) for ii in scale.split(",")]
scale = nm.array(scale, dtype=nm.float64, ndmin=1)
except:
output("bad scale! (%s)" % scale)
parser.print_help()
sys.exit(1)
filename_in, filename_out = args
mesh = Mesh.from_file(filename_in)
if scale is not None:
if len(scale) == 1:
tr = nm.eye(mesh.dim, dtype=nm.float64) * scale
elif len(scale) == mesh.dim:
tr = nm.diag(scale)
else:
raise ValueError("bad scale! (%s)" % scale)
mesh.transform_coors(tr)
io = "auto"
if options.format:
try:
io = io_table[options.format](filename_out)
except KeyError:
output("unknown output mesh format! (%s)" % options.format)
output_writable_meshes()
sys.exit(1)
if "w" not in supported_capabilities[options.format]:
output("write support not implemented for output mesh format! (%s)" % options.format)
output_writable_meshes()
sys.exit(1)
output("writing %s..." % filename_out)
mesh.write(filename_out, io=io)
output("...done")
def main():
parser = OptionParser(usage=usage, version='%prog ' + sfepy.__version__)
group = OptionGroup(parser, 'Output Options')
group.add_option('-o',
'--output',
metavar='filename',
action='store',
dest='filename',
default=None,
help=help['filename'])
group.add_option('--output-dir',
metavar='directory',
action='store',
dest='output_dir',
default=None,
help=help['output_dir'])
group.add_option('-n',
'--no-show',
action='store_false',
dest='show',
default=True,
help=help['no_show'])
group.add_option('',
'--no-offscreen',
action='store_false',
dest='offscreen',
default=None,
help=help['no_offscreen'])
group.add_option('-a',
'--animation',
metavar='<ffmpeg-supported format>',
action='store',
dest='anim_format',
default=None,
help=help['anim_format'])
group.add_option('',
'--ffmpeg-options',
metavar='<ffmpeg options>',
action='store',
dest='ffmpeg_options',
default='-r 10 -sameq',
help=help['ffmpeg_options'])
parser.add_option_group(group)
group = OptionGroup(parser, 'Data Options')
group.add_option('--step',
type='int',
metavar='step',
action='store',
dest='step',
default=0,
help=help['step'])
group.add_option('-w',
'--watch',
action='store_true',
dest='watch',
default=False,
help=help['watch'])
group.add_option('--all',
action='store_true',
dest='all',
default=False,
help=help['all'])
group.add_option('--only-names',
metavar='list of names',
action='store',
dest='only_names',
default=None,
help=help['only_names'])
group.add_option('-l',
'--list-ranges',
action='store_true',
dest='list_ranges',
default=False,
help=help['list_ranges'])
group.add_option('--ranges',
type='str',
metavar='name1,min1,max1:name2,min2,max2:...',
action='callback',
dest='ranges',
callback=parse_ranges,
help=help['ranges'])
parser.add_option_group(group)
group = OptionGroup(parser, 'View Options')
group.add_option('-r',
'--resolution',
type='str',
metavar='resolution',
action='callback',
dest='resolution',
callback=parse_resolution,
help=help['resolution'])
group.add_option('--layout',
metavar='layout',
action='store',
dest='layout',
default='rowcol',
help=help['layout'])
group.add_option('--3d',
action='store_true',
dest='is_3d',
default=False,
help=help['is_3d'])
group.add_option('--view',
type='str',
metavar='angle,angle[,distance[,focal_point]]',
action='callback',
dest='view',
callback=parse_view,
help=help['view'])
group.add_option('--roll',
type='float',
metavar='angle',
action='store',
dest='roll',
default=0.0,
help=help['roll'])
group.add_option('--fgcolor',
metavar='R,G,B',
action='store',
dest='fgcolor',
default='0.0,0.0,0.0',
help=help['fgcolor'])
group.add_option('--bgcolor',
metavar='R,G,B',
action='store',
dest='bgcolor',
default='1.0,1.0,1.0',
help=help['bgcolor'])
group.add_option('--anti-aliasing',
type='int',
metavar='value',
action='store',
dest='anti_aliasing',
default=None,
help=help['anti_aliasing'])
parser.add_option_group(group)
group = OptionGroup(parser, 'Custom Plots Options')
group.add_option('-b',
'--scalar-bar',
action='store_true',
dest='is_scalar_bar',
default=False,
help=help['is_scalar_bar'])
group.add_option('',
'--wireframe',
action='store_true',
dest='is_wireframe',
default=False,
help=help['is_wireframe'])
group.add_option('--group-names',
type='str',
metavar='name1,...,nameN:...',
action='callback',
dest='group_names',
callback=parse_group_names,
help=help['group_names'])
group.add_option('--subdomains',
type='str',
metavar='mat_id_name,threshold_limits,single_color',
action='callback',
dest='subdomains_args',
callback=parse_subdomains,
default=None,
help=help['subdomains'])
group.add_option('-d', '--domain-specific', type='str',
metavar='"var_name0,function_name0,' \
'par0=val0,par1=val1,...:var_name1,..."',
action='callback', dest='domain_specific',
callback=parse_domain_specific, default=None,
help=help['domain_specific'])
parser.add_option_group(group)
group = OptionGroup(parser, 'Mayavi Options')
group.add_option('--scalar-mode',
metavar='mode',
action='store',
dest='scalar_mode',
default='iso_surface',
help=help['scalar_mode'])
group.add_option('--vector-mode',
metavar='mode',
action='store',
dest='vector_mode',
default='arrows_norm',
help=help['vector_mode'])
group.add_option('-s',
'--scale-glyphs',
type='float',
metavar='scale',
action='store',
dest='rel_scaling',
default=0.05,
help=help['rel_scaling'])
group.add_option('--clamping',
action='store_true',
dest='clamping',
default=False,
help=help['clamping'])
group.add_option('--opacity',
type='str',
metavar='opacity',
action='callback',
dest='opacity',
callback=parse_opacity,
help=help['opacity'])
group.add_option('--rel-text-width',
type='float',
metavar='width',
action='store',
dest='rel_text_width',
default=0.02,
help=help['rel_text_width'])
parser.add_option_group(group)
options, args = parser.parse_args()
if len(args) >= 1:
if len(args) == 1:
filenames = glob.glob(args[0])
filenames.sort()
else:
filenames = args
else:
parser.print_help(),
return
options.fgcolor = tuple([float(ii) for ii in options.fgcolor.split(',')])
assert_(len(options.fgcolor) == 3)
options.bgcolor = tuple([float(ii) for ii in options.bgcolor.split(',')])
assert_(len(options.bgcolor) == 3)
# Output dir / file names.
if options.filename is None:
options.filename = 'view.png'
if options.output_dir is None:
options.output_dir = '.'
else:
options.output_dir, options.filename = os.path.split(options.filename)
# Data filtering,
if not options.all:
filter_names = ['node_groups', 'mat_id']
else:
filter_names = []
if options.anim_format is not None:
# Do not call show when saving an animation.
options.show = False
if options.list_ranges:
all_ranges = {}
for ii, filename in enumerate(filenames):
output('%d: %s' % (ii, filename))
file_source = create_file_source(filename)
file_source.set_step(options.step)
for key, val in get_data_ranges(file_source()).iteritems():
all_ranges.setdefault(key, []).append(val[3:])
if len(filenames) > 1:
print 'summary of ranges:'
for key, ranges in all_ranges.iteritems():
aux = nm.array(ranges)
print ' "%s": min(min): %s max(max): %s' % \
(key, aux[:,[0,2]].min(axis=0), aux[:,[1,3]].max(axis=0))
else:
if len(filenames) == 1:
filenames = filenames[0]
view = view_file(filenames, filter_names, options)
if options.anim_format is not None:
view.encode_animation(options.filename, options.anim_format,
options.ffmpeg_options)
def main():
parser = ArgumentParser(description=__doc__,
formatter_class=RawDescriptionHelpFormatter)
parser.add_argument('--version', action='version',
version='%(prog)s ' + sfepy.__version__)
parser.add_argument('--debug',
action='store_true', dest='debug',
default=False, help=helps['debug'])
group = parser.add_argument_group('Output Options')
group.add_argument('-o', '--output', metavar='filename',
action='store', dest='filename',
default=None, help=helps['filename'])
group.add_argument('--output-dir', metavar='directory',
action='store', dest='output_dir',
default=None, help=helps['output_dir'])
group.add_argument('-n', '--no-show',
action='store_false', dest='show',
default=True, help=helps['no_show'])
group.add_argument('--no-offscreen',
action='store_false', dest='offscreen',
default=None, help=helps['no_offscreen'])
group.add_argument('-a', '--animation',
metavar='<ffmpeg-supported format>', action='store',
dest='anim_format', default=None,
help=helps['anim_format'])
group.add_argument('--ffmpeg-options', metavar='<ffmpeg options>',
action='store', dest='ffmpeg_options',
default='-r 10 -sameq',
help=helps['ffmpeg_options'])
group = parser.add_argument_group('Data Options')
group.add_argument('--step', type=int, metavar='step',
action='store', dest='step',
default=None, help=helps['step'])
group.add_argument('--time', type=float, metavar='time',
action='store', dest='time',
default=None, help=helps['time'])
group.add_argument('-w', '--watch',
action='store_true', dest='watch',
default=False, help=helps['watch'])
group.add_argument('--all',
action='store_true', dest='all',
default=False, help=helps['all'])
group.add_argument('--only-names', metavar='list of names',
action='store', dest='only_names',
default=None, help=helps['only_names'])
group.add_argument('-l', '--list-ranges',
action='store_true', dest='list_ranges',
default=False, help=helps['list_ranges'])
group.add_argument('--ranges', type=str,
metavar='name1,min1,max1:name2,min2,max2:...',
action=ParseRanges, dest='ranges',
help=helps['ranges'])
group = parser.add_argument_group('View Options')
group.add_argument('-r', '--resolution', type=str, metavar='resolution',
action=ParseResolution, dest='resolution',
help=helps['resolution'])
group.add_argument('--layout', metavar='layout',
action='store', dest='layout',
default='rowcol', help=helps['layout'])
group.add_argument('--3d',
action='store_true', dest='is_3d',
default=False, help=helps['is_3d'])
group.add_argument('--view', type=str,
metavar='angle,angle[,distance[,focal_point]]',
action=ParseView, dest='view',
help=helps['view'])
group.add_argument('--roll', type=float, metavar='angle',
action='store', dest='roll',
default=0.0, help=helps['roll'])
group.add_argument('--parallel-projection',
action='store_true', dest='parallel_projection',
default=False, help=helps['parallel_projection'])
group.add_argument('--fgcolor', metavar='R,G,B',
action='store', dest='fgcolor',
default='0.0,0.0,0.0', help=helps['fgcolor'])
group.add_argument('--bgcolor', metavar='R,G,B',
action='store', dest='bgcolor',
default='1.0,1.0,1.0', help=helps['bgcolor'])
group.add_argument('--colormap', metavar='colormap',
action='store', dest='colormap',
default='blue-red', help=helps['colormap'])
group.add_argument('--anti-aliasing', type=int, metavar='value',
action='store', dest='anti_aliasing',
default=None, help=helps['anti_aliasing'])
group = parser.add_argument_group('Custom Plots Options')
group.add_argument('-b', '--scalar-bar',
action='store_true', dest='is_scalar_bar',
default=False, help=helps['is_scalar_bar'])
group.add_argument('--wireframe',
action='store_true', dest='is_wireframe',
default=False, help=helps['is_wireframe'])
group.add_argument('--group-names', type=str,
metavar='name1,...,nameN:...', action=ParseGroupNames,
dest='group_names', help=helps['group_names'])
group.add_argument('--subdomains', type=str,
metavar='mat_id_name,threshold_limits,single_color',
action=ParseSubdomains, dest='subdomains_args',
default=None,
help=helps['subdomains'])
group.add_argument('-d', '--domain-specific', type=str,
metavar='"var_name0,function_name0,' \
'par0=val0,par1=val1,...:var_name1,..."',
action=ParseDomainSpecific, dest='domain_specific',
default=None,
help=helps['domain_specific'])
group = parser.add_argument_group('Mayavi Options')
group.add_argument('--scalar-mode', metavar='mode',
action='store', dest='scalar_mode',
default='iso_surface', help=helps['scalar_mode'])
group.add_argument('--vector-mode', metavar='mode',
action='store', dest='vector_mode',
default='arrows_norm', help=helps['vector_mode'])
group.add_argument('-s', '--scale-glyphs', type=float, metavar='scale',
action='store', dest='rel_scaling',
default=0.05, help=helps['rel_scaling'])
group.add_argument('--clamping',
action='store_true', dest='clamping',
default=False, help=helps['clamping'])
group.add_argument('--opacity', type=str, metavar='opacity',
action=ParseOpacity, dest='opacity',
help=helps['opacity'])
group.add_argument('--rel-text-width', type=float, metavar='width',
action='store', dest='rel_text_width',
default=0.02, help=helps['rel_text_width'])
parser.add_argument('filenames', nargs='+')
options = parser.parse_args()
if options.debug:
from sfepy.base.base import debug_on_error; debug_on_error()
filenames = options.filenames
options.fgcolor = tuple([float(ii) for ii in
options.fgcolor.split(',')])
assert_(len(options.fgcolor) == 3)
options.bgcolor = tuple([float(ii) for ii in
options.bgcolor.split(',')])
assert_(len(options.bgcolor) == 3)
can_save = not options.show
# Output dir / file names.
if options.filename is None:
can_save = False
options.filename = 'view.png'
if options.output_dir is None:
options.output_dir = '.'
else:
options.output_dir, options.filename = os.path.split(options.filename)
# Data filtering,
if not options.all:
filter_names = ['node_groups', 'mat_id']
else:
filter_names = []
if options.anim_format is not None:
# Do not call show when saving an animation.
options.show = False
if options.list_ranges:
all_ranges = {}
for ii, filename in enumerate(filenames):
output('%d: %s' % (ii, filename))
file_source = create_file_source(filename)
if (options.step is None) and (options.time is None):
steps, _ = file_source.get_ts_info()
else:
if options.step is not None:
step, _ = file_source.get_step_time(step=options.step)
else:
step, _ = file_source.get_step_time(time=options.time)
steps = [step]
if not len(steps):
steps = [0]
for iis, step in enumerate(steps):
output('%d: step %d' %(iis, step))
file_source.get_step_time(step=step)
source = file_source.create_source()
ranges = get_data_ranges(source, return_only=True)
for key, val in six.iteritems(ranges):
all_ranges.setdefault(key, []).append(val[3:])
if (len(filenames) > 1) or (len(steps) > 1):
output('union of ranges:')
else:
output('ranges:')
for key, ranges in six.iteritems(all_ranges):
aux = nm.array(ranges)
mins = aux[:, [0, 2]].min(axis=0)
maxs = aux[:, [1, 3]].max(axis=0)
output(' items: %s,%e,%e' % (key, mins[0], maxs[0]))
output(' norms: %s,%e,%e' % (key, mins[1], maxs[1]))
else:
if len(filenames) == 1:
filenames = filenames[0]
view = view_file(filenames, filter_names, options)
if can_save:
view.save_image(options.filename)
if options.anim_format is not None:
view.save_animation(options.filename)
view.encode_animation(options.filename, options.anim_format,
options.ffmpeg_options)
def main():
parser = OptionParser(usage=usage)
parser.add_option('-s', '--scale', metavar='scale',
action='store', dest='scale',
default=None, help=help['scale'])
parser.add_option('-r', '--refine', metavar='level',
action='store', type=int, dest='refine',
default=0, help=help['refine'])
parser.add_option('-f', '--format', metavar='format',
action='store', type='string', dest='format',
default=None, help=help['format'])
parser.add_option('-l', '--list', action='store_true',
dest='list', help=help['list'])
(options, args) = parser.parse_args()
if options.list:
output_writable_meshes()
sys.exit(0)
if len(args) != 2:
parser.print_help()
sys.exit(1)
scale = options.scale
if scale is not None:
try:
try:
scale = float(scale)
except ValueError:
scale = [float(ii) for ii in scale.split(',')]
scale = nm.array(scale, dtype=nm.float64, ndmin=1)
except:
output('bad scale! (%s)' % scale)
parser.print_help()
sys.exit(1)
filename_in, filename_out = args
mesh = Mesh.from_file(filename_in)
if scale is not None:
if len(scale) == 1:
tr = nm.eye(mesh.dim, dtype=nm.float64) * scale
elif len(scale) == mesh.dim:
tr = nm.diag(scale)
else:
raise ValueError('bad scale! (%s)' % scale)
mesh.transform_coors(tr)
if options.refine > 0:
domain = Domain(mesh.name, mesh)
output('initial mesh: %d nodes %d elements'
% (domain.shape.n_nod, domain.shape.n_el))
for ii in range(options.refine):
output('refine %d...' % ii)
domain = domain.refine()
output('... %d nodes %d elements'
% (domain.shape.n_nod, domain.shape.n_el))
mesh = domain.mesh
io = MeshIO.for_format(filename_out, format=options.format,
writable=True)
output('writing %s...' % filename_out)
mesh.write(filename_out, io=io)
output('...done')
def main():
parser = OptionParser(usage=usage, version="%prog " + sfepy.__version__)
parser.add_option(
"-l", "--list-ranges", action="store_true", dest="list_ranges", default=False, help=help["list_ranges"]
)
parser.add_option("-n", "--no-show", action="store_false", dest="show", default=True, help=help["no_show"])
parser.add_option("--3d", action="store_true", dest="is_3d", default=False, help=help["is_3d"])
parser.add_option(
"--view",
type="str",
metavar="angle,angle",
action="callback",
dest="view",
callback=parse_view,
help=help["view"],
)
parser.add_option(
"--roll", type="float", metavar="angle", action="store", dest="roll", default=0.0, help=help["roll"]
)
parser.add_option(
"--layout", metavar="layout", action="store", dest="layout", default="rowcol", help=help["layout"]
)
parser.add_option(
"--scalar-mode",
metavar="mode",
action="store",
dest="scalar_mode",
default="iso_surface",
help=help["scalar_mode"],
)
parser.add_option(
"--vector-mode",
metavar="mode",
action="store",
dest="vector_mode",
default="arrows_norm",
help=help["vector_mode"],
)
parser.add_option(
"-s",
"--scale-glyphs",
type="float",
metavar="scale",
action="store",
dest="rel_scaling",
default=0.05,
help=help["rel_scaling"],
)
parser.add_option("--clamping", action="store_true", dest="clamping", default=False, help=help["clamping"])
parser.add_option(
"--ranges",
type="str",
metavar="name1,min1,max1:name2,min2,max2:...",
action="callback",
dest="ranges",
callback=parse_ranges,
help=help["ranges"],
)
parser.add_option(
"-b", "--scalar-bar", action="store_true", dest="is_scalar_bar", default=False, help=help["is_scalar_bar"]
)
parser.add_option(
"", "--wireframe", action="store_true", dest="is_wireframe", default=False, help=help["is_wireframe"]
)
parser.add_option(
"--rel-text-width",
type="float",
metavar="width",
action="store",
dest="rel_text_width",
default=0.02,
help=help["rel_text_width"],
)
parser.add_option("-w", "--watch", action="store_true", dest="watch", default=False, help=help["watch"])
parser.add_option(
"-o", "--output", metavar="filename", action="store", dest="filename", default=None, help=help["filename"]
)
parser.add_option(
"--output-dir", metavar="directory", action="store", dest="output_dir", default=None, help=help["output_dir"]
)
parser.add_option(
"-a",
"--animation",
metavar="<ffmpeg-supported format>",
action="store",
dest="anim_format",
default=None,
help=help["anim_format"],
)
parser.add_option(
"",
"--ffmpeg-options",
metavar='"<ffmpeg options>"',
action="store",
dest="ffmpeg_options",
default="-r 10 -sameq",
help=help["ffmpeg_options"],
)
parser.add_option(
"-r",
"--resolution",
type="str",
metavar="resolution",
action="callback",
dest="resolution",
callback=parse_resolution,
help=help["resolution"],
)
parser.add_option("--all", action="store_true", dest="all", default=False, help=help["all"])
parser.add_option(
"--only-names",
metavar="list of names",
action="store",
dest="only_names",
default=None,
help=help["only_names"],
)
parser.add_option(
"--group-names",
type="str",
metavar="name1,...,nameN:...",
action="callback",
dest="group_names",
callback=parse_group_names,
help=help["group_names"],
)
parser.add_option("--step", type="int", metavar="step", action="store", dest="step", default=0, help=help["step"])
parser.add_option(
"--anti-aliasing",
type="int",
metavar="value",
action="store",
dest="anti_aliasing",
default=None,
help=help["anti_aliasing"],
)
options, args = parser.parse_args()
if len(args) >= 1:
if len(args) == 1:
filenames = glob.glob(args[0])
filenames.sort()
else:
filenames = args
else:
parser.print_help(),
return
# Output dir / file names.
if options.filename is None:
options.filename = "view.png"
if options.output_dir is None:
options.output_dir = "."
else:
options.output_dir, options.filename = os.path.split(options.filename)
# Data filtering,
if not options.all:
filter_names = ["node_groups", "mat_id"]
else:
filter_names = []
if options.anim_format is not None:
# Force the offscreen rendering when saving an animation.
options.show = False
if options.list_ranges:
all_ranges = {}
for ii, filename in enumerate(filenames):
output("%d: %s" % (ii, filename))
file_source = create_file_source(filename)
file_source.set_step(options.step)
for key, val in get_data_ranges(file_source()).iteritems():
all_ranges.setdefault(key, []).append(val[3:])
if len(filenames) > 1:
print "summary of ranges:"
for key, ranges in all_ranges.iteritems():
aux = nm.array(ranges)
print ' "%s": min(min): %s max(max): %s' % (
key,
aux[:, [0, 2]].min(axis=0),
aux[:, [1, 3]].max(axis=0),
)
else:
if len(filenames) == 1:
filenames = filenames[0]
view = view_file(filenames, filter_names, options)
if options.anim_format is not None:
view.encode_animation(options.filename, options.anim_format, options.ffmpeg_options)
