def __init__(self):
"""Initialise the class by placing API_common methods into the API."""
# Place methods into the API.
self.base_data_loop = self._base_data_loop_spin
self.create_mc_data = self._create_mc_relax_data
self.model_loop = self._model_loop_spin
self.print_model_title = self._print_model_title_spin
self.return_conversion_factor = self._return_no_conversion_factor
self.return_error = self._return_error_relax_data
self.return_value = self._return_value_general
self.set_param_values = self._set_param_values_spin
self.set_selected_sim = self._set_selected_sim_spin
self.sim_pack_data = self._sim_pack_relax_data
# Place a copy of the parameter list object in the instance namespace.
self._PARAMS = Consistency_tests_params()
def return_parameter_object(analysis_type=None, pipe_name=None):
"""Return the specific analysis API parameter object corresponding to the function type.
@keyword analysis_type: The specific analysis type. This overrides the pipe_name argument.
@type analysis_type: str or None
@keyword pipe_name: The name of the data pipe to obtain the analysis type from. This is ignored if the analysis_type argument is given. If both arguments are None, then the current data pipe will be used.
"""
# The analysis type, if not given.
if analysis_type is None:
# Check if a data pipe exists.
check_pipe()
# Use a custom data pipe name.
if pipe_name:
analysis_type = ds[pipe_name].pipe_type
# Use the current data pipe.
else:
analysis_type = cdp.pipe_type
# Consistency testing.
if analysis_type == 'ct':
from specific_analyses.consistency_tests.parameter_object import Consistency_tests_params
return Consistency_tests_params()
# The Frame Order theories.
elif analysis_type == 'frame order':
from specific_analyses.frame_order.parameter_object import Frame_order_params
return Frame_order_params()
# Hybrid models.
elif analysis_type == 'hybrid':
from specific_analyses.hybrid import Hybrid_params
return Hybrid_params()
# Reduced spectral density mapping.
elif analysis_type == 'jw':
from specific_analyses.jw_mapping.parameter_object import Jw_mapping_params
return Jw_mapping_params()
# Model-free analysis.
elif analysis_type == 'mf':
from specific_analyses.model_free.parameter_object import Model_free_params
return Model_free_params()
# The N-state model.
elif analysis_type == 'N-state':
from specific_analyses.n_state_model.parameter_object import N_state_params
return N_state_params()
# NOE calculation.
elif analysis_type == 'noe':
from specific_analyses.noe.parameter_object import Noe_params
return Noe_params()
# Relaxation dispersion curve fitting.
elif analysis_type == 'relax_disp':
from specific_analyses.relax_disp.parameter_object import Relax_disp_params
return Relax_disp_params()
# Relaxation curve fitting.
elif analysis_type == 'relax_fit':
from specific_analyses.relax_fit.parameter_object import Relax_fit_params
return Relax_fit_params()
# Unknown analysis.
else:
raise RelaxError("The analysis type '%s' is unknown." % analysis_type)
# #
# You should have received a copy of the GNU General Public License #
# along with this program. If not, see <http://www.gnu.org/licenses/>. #
# #
###############################################################################
# Module docstring.
"""The value user function definitions."""
# Python module imports.
from os import sep
# relax module imports.
from graphics import WIZARD_IMAGE_PATH
from pipe_control import pipes, value
from specific_analyses.consistency_tests.parameter_object import Consistency_tests_params; consistency_test_params = Consistency_tests_params()
from specific_analyses.frame_order.parameter_object import Frame_order_params; frame_order_params = Frame_order_params()
from specific_analyses.jw_mapping.parameter_object import Jw_mapping_params; jw_mapping_params = Jw_mapping_params()
from specific_analyses.model_free.parameter_object import Model_free_params; model_free_params = Model_free_params()
from specific_analyses.n_state_model.parameter_object import N_state_params; n_state_params = N_state_params()
from specific_analyses.noe.parameter_object import Noe_params; noe_params = Noe_params()
from specific_analyses.relax_disp.parameter_object import Relax_disp_params; relax_disp_params = Relax_disp_params()
from specific_analyses.relax_fit.parameter_object import Relax_fit_params; relax_fit_params = Relax_fit_params()
from user_functions.data import Uf_info; uf_info = Uf_info()
from user_functions.data import Uf_tables; uf_tables = Uf_tables()
from user_functions.objects import Desc_container
# The user function class.
uf_class = uf_info.add_class('value')
uf_class.title = "Class for setting parameter values."
# GNU General Public License for more details. # # # # You should have received a copy of the GNU General Public License # # along with this program. If not, see <http://www.gnu.org/licenses/>. # # # ############################################################################### # Module docstring. """The grace user function definitions for controlling the Grace data viewing software.""" # relax module imports. from graphics import WIZARD_IMAGE_PATH from pipe_control import grace from pipe_control.plotting import write_xy from specific_analyses.consistency_tests.parameter_object import Consistency_tests_params consistency_test_params = Consistency_tests_params() from specific_analyses.jw_mapping.parameter_object import Jw_mapping_params jw_mapping_params = Jw_mapping_params() from specific_analyses.model_free.parameter_object import Model_free_params model_free_params = Model_free_params() from specific_analyses.noe.parameter_object import Noe_params noe_params = Noe_params() from specific_analyses.relax_disp.parameter_object import Relax_disp_params relax_disp_params = Relax_disp_params() from specific_analyses.relax_fit.parameter_object import Relax_fit_params relax_fit_params = Relax_fit_params() from user_functions.data import Uf_info uf_info = Uf_info() from user_functions.objects import Desc_container from user_functions.wildcards import WILDCARD_GRACE_ALL
# Python module imports.
from os import sep
import dep_check
if dep_check.wx_module:
from wx import FD_OPEN, FD_SAVE
else:
FD_OPEN = -1
FD_SAVE = -1
# relax module imports.
from graphics import WIZARD_IMAGE_PATH
from pipe_control import pipes, value
from specific_analyses.consistency_tests.parameter_object import Consistency_tests_params
consistency_test_params = Consistency_tests_params()
from specific_analyses.frame_order.parameter_object import Frame_order_params
frame_order_params = Frame_order_params()
from specific_analyses.jw_mapping.parameter_object import Jw_mapping_params
jw_mapping_params = Jw_mapping_params()
from specific_analyses.model_free.parameter_object import Model_free_params
model_free_params = Model_free_params()
from specific_analyses.n_state_model.parameter_object import N_state_params
n_state_params = N_state_params()
from specific_analyses.noe.parameter_object import Noe_params
noe_params = Noe_params()
# Module docstring.
"""The grace user function definitions for controlling the Grace data viewing software."""
# Python module imports.
import dep_check
if dep_check.wx_module:
from wx import FD_OPEN, FD_SAVE
else:
FD_OPEN = -1
FD_SAVE = -1
# relax module imports.
from graphics import WIZARD_IMAGE_PATH
from pipe_control import grace
from pipe_control.plotting import write_xy
from specific_analyses.consistency_tests.parameter_object import Consistency_tests_params; consistency_test_params = Consistency_tests_params()
from specific_analyses.jw_mapping.parameter_object import Jw_mapping_params; jw_mapping_params = Jw_mapping_params()
from specific_analyses.model_free.parameter_object import Model_free_params; model_free_params = Model_free_params()
from specific_analyses.noe.parameter_object import Noe_params; noe_params = Noe_params()
from specific_analyses.relax_disp.parameter_object import Relax_disp_params; relax_disp_params = Relax_disp_params()
from specific_analyses.relax_fit.parameter_object import Relax_fit_params; relax_fit_params = Relax_fit_params()
from user_functions.data import Uf_info; uf_info = Uf_info()
from user_functions.objects import Desc_container
from user_functions.wildcards import WILDCARD_GRACE_ALL
# The user function class.
uf_class = uf_info.add_class('grace')
uf_class.title = "Class for interfacing with Grace."
uf_class.menu_text = "&grace"
uf_class.gui_icon = "relax.grace_icon"
