class SequenceMetadataTestCase(unittest.TestCase):
def setUp(self):
self.case = SequenceMetadata("ABCD", "EFGH")
def tearDown(self):
del self.case
def test_add_sequence(self):
sequences = ["abcd", "efghi", "jklmno", "pqrstuv"]
self.case.add_sequences(sequences)
self.assertEqual(self.case.dict["sequences"], sequences)
self.assertEqual(self.case.dict["contigs"], 4)
self.assertEqual(self.case.dict["bp"], 22)
self.assertIsNotNone(self.case.dict["checksum"])
def test_generate_checksum(self):
self.case.dict["sequences"] = ["abcd", "efghi", "jklmno", "pqrstuv"]
self.case.generate_checksum()
result = "44a66044834cbe55040089cabfc102d5"
self.assertEqual(self.case.dict["checksum"],result)
def test_generate_kwargs(self):
with self.assertRaises(TypeError):
self.case.generate_kwargs()
sequences = ["abcd", "efghi", "jklmno", "pqrstuv"]
self.case.add_sequences(sequences)
self.case.dict["is_from"] = "CORE"
results = {"name":"EFGH_seq",
"genome":"ABCD",
"sequences":sequences,
"bp":22,
"contigs":4,
"checksum":"44a66044834cbe55040089cabfc102d5",
"is_from":"CORE"}
self.assertEqual(self.case.generate_kwargs(), results)
def setUp(self):
self.case = SequenceMetadata("ABCD", "EFGH")
