def handle(self, *args, **options):
if len(args) < 1:
self.stdout.write("no command specified\n")
return
if args[0] == 'all':
yesno = raw_input("Are you REALLY sure you want to extract ALL "
"experiment metadata (will overwrite existing "
"data) [y/N]")
if yesno.lower() == "y":
process_all_experiments()
else:
try:
expid = int(args[0])
except ValueError:
self.stderr.write("invalid experiment id")
return
exp = Experiment.objects.get(id=expid)
process_experimentX(exp)
def handle(self, *args, **options):
if len(args) < 1:
self.stdout.write("no command specified\n")
return
if args[0] == 'all':
yesno = raw_input("Are you REALLY sure you want to extract ALL "
"experiment metadata (will overwrite existing "
"data) [y/N]")
if yesno.lower() == "y":
process_all_experiments()
else:
try:
expid = int(args[0])
except ValueError:
self.stderr.write("invalid experiment id")
return
exp = Experiment.objects.get(id=expid)
process_experimentX(exp)
def addfiles(request):
import os
from os.path import basename
from os import path
from tardis.tardis_portal.models import Dataset_File
import itertools
from tardis.apps.hpctardis.metadata import process_all_experiments
from tardis.apps.hpctardis.metadata import process_experimentX
if "username" in request.POST and "password" in request.POST:
authMethod = request.POST["authMethod"]
user = auth_service.authenticate(authMethod=authMethod, request=request)
if user:
eid = request.POST["eid"]
desc = request.POST["desc"]
folder = request.POST["folder"]
eid = int(eid)
# TODO Use the try and except
auth_key = settings.DEFAULT_AUTH
try:
exp = Experiment.objects.get(pk=eid)
author = exp.created_by
except Experiment.DoesNotExist:
logger.exception("Experiment for eid %i in addfiles does not exist" % eid)
return HttpResponse("Experiment Not Found")
current_user = str(user)
created_user = str(author)
if current_user == created_user:
staging = path.join(settings.STAGING_PATH, str(user), str(eid), str(folder))
filelist = []
ds_desc = {}
# import pdb
# pdb.set_trace()
for root, dirs, files in os.walk(staging):
for named in files:
filelist.append(named)
next = str(filelist)
ds_desc[desc] = filelist
# TODO If needed for security - Metadata from the folder can be extracted
# to check the folder name
for d, df in ds_desc.items():
dataset = models.Dataset(description=d, experiment=exp)
dataset.save()
for f in df:
logger.debug("f = %s" % f)
filepath = path.join(staging, f)
size = path.getsize(filepath)
filename = path.basename(filepath)
datafile = Dataset_File(
dataset=dataset, filename=filename, url=filepath, size=size, protocol="staging"
)
datafile.save()
next = next + " File path :" + staging
process_experimentX(exp)
next = next + " The Author is : " + str(author) + "," + " The User is : " + str(user)
return HttpResponse(next)
else:
next = "The author of the experiment can only add the files (From Tardis)"
return HttpResponse(next)
else:
return HttpResponse("UnSuccessful")
