def outFileSpec(of=None, log=False):
"""Local routine to create an FileSpec for the an job output/log file
:arg str of: output file base name
:return: FileSpec object for the output file."""
outfile = FileSpec()
if log:
outfile.lfn = "job.log_%d_%s.tgz" % (jobid, lfnhanger)
outfile.type = 'log'
else:
outfile.lfn = '%s_%d_%s%s' % (os.path.splitext(of)[0],
jobid, lfnhanger,
os.path.splitext(of)[1])
outfile.type = 'output'
outfile.destinationDBlock = pandajob.destinationDBlock
outfile.destinationSE = task['tm_asyncdest']
outfile.dataset = pandajob.destinationDBlock
return outfile
def outFileSpec(of=None, log=False):
"""Local routine to create an FileSpec for the an job output/log file
:arg str of: output file base name
:return: FileSpec object for the output file."""
outfile = FileSpec()
if log:
outfile.lfn = "job.log_%d_%s.tgz" % (jobid, lfnhanger)
outfile.type = 'log'
else:
outfile.lfn = '%s_%d_%s%s' %(os.path.splitext(of)[0], jobid, lfnhanger, os.path.splitext(of)[1])
outfile.type = 'output'
outfile.destinationDBlock = pandajob.destinationDBlock
outfile.destinationSE = task['tm_asyncdest']
outfile.dataset = pandajob.destinationDBlock
return outfile
def createJobSpec(nodes, walltime, command, jobName, outputFile=None):
transformation = '#json#'
datasetName = 'panda.destDB.%s' % subprocess.check_output('uuidgen')
destName = 'local'
prodSourceLabel = 'user'
currentPriority = 1000
job = JobSpec()
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = jobName
job.VO = VO
job.transformation = transformation
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = currentPriority
job.prodSourceLabel = prodSourceLabel
job.computingSite = QUEUE_NAME
job.cmtConfig = json.dumps({'name': job.jobName, 'next': None})
lqcd_command = {
"nodes": nodes,
"walltime": walltime,
"name": job.jobName,
"command": command
}
if (outputFile):
lqcd_command['outputFile'] = outputFile
job.jobParameters = json.dumps(lqcd_command)
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % job.jobName.strip()
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
job.addFile(fileOL)
#job.cmtConfig = None
return job
def createJob(self,
name,
nodes,
walltime,
command,
inputs=None,
queuename=None):
job = JobSpec()
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = "%s" % commands.getoutput('uuidgen')
job.VO = self.vo
job.transformation = self.transformation
job.destinationDBlock = self.datasetName
job.destinationSE = self.destName
job.currentPriority = self.currentPriority
job.prodSourceLabel = self.prodSourceLabel
job.computingSite = self.site if queuename is None else queuename
lqcd_command = {
"nodes": nodes,
"walltime": walltime,
"name": name,
"command": command
}
job.jobParameters = json.dumps(lqcd_command)
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % job.jobName
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
job.addFile(fileOL)
job.cmtConfig = inputs
return job
for i in range(1):
job = JobSpec()
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = "%s_%d" % (commands.getoutput('uuidgen'), i)
job.AtlasRelease = 'Atlas-17.0.5'
job.homepackage = 'AtlasProduction/17.0.5.6'
job.transformation = 'Evgen_trf.py'
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 10000
job.prodSourceLabel = 'test'
job.computingSite = site
job.cloud = cloud
job.cmtConfig = 'i686-slc5-gcc43-opt'
file = FileSpec()
file.lfn = "%s.evgen.pool.root" % job.jobName
file.destinationDBlock = job.destinationDBlock
file.destinationSE = job.destinationSE
file.dataset = job.destinationDBlock
file.destinationDBlockToken = 'ATLASDATADISK'
file.type = 'output'
job.addFile(file)
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % job.jobName
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.destinationDBlockToken = 'ATLASDATADISK'
fileOL.type = 'log'
def prepare(self, app, appsubconfig, appmasterconfig, jobmasterconfig):
"""Prepare the specific aspec of each subjob.
Returns: subjobconfig list of objects understood by backends."""
from pandatools import Client
from pandatools import AthenaUtils
from taskbuffer.JobSpec import JobSpec
from taskbuffer.FileSpec import FileSpec
from GangaAtlas.Lib.ATLASDataset.DQ2Dataset import dq2_set_dataset_lifetime
from GangaPanda.Lib.Panda.Panda import refreshPandaSpecs
# make sure we have the correct siteType
refreshPandaSpecs()
job = app._getParent()
masterjob = job._getRoot()
logger.debug('ProdTransPandaRTHandler prepare called for %s',
job.getFQID('.'))
job.backend.actualCE = job.backend.site
job.backend.requirements.cloud = Client.PandaSites[job.backend.site]['cloud']
# check that the site is in a submit-able status
if not job.splitter or job.splitter._name != 'DQ2JobSplitter':
allowed_sites = job.backend.list_ddm_sites()
try:
outDsLocation = Client.PandaSites[job.backend.site]['ddm']
tmpDsExist = False
if (configPanda['processingType'].startswith('gangarobot') or configPanda['processingType'].startswith('hammercloud')):
#if Client.getDatasets(job.outputdata.datasetname):
if getDatasets(job.outputdata.datasetname):
tmpDsExist = True
logger.info('Re-using output dataset %s'%job.outputdata.datasetname)
if not configPanda['specialHandling']=='ddm:rucio' and not configPanda['processingType'].startswith('gangarobot') and not configPanda['processingType'].startswith('hammercloud') and not configPanda['processingType'].startswith('rucio_test'):
Client.addDataset(job.outputdata.datasetname,False,location=outDsLocation,allowProdDisk=True,dsExist=tmpDsExist)
logger.info('Output dataset %s registered at %s'%(job.outputdata.datasetname,outDsLocation))
dq2_set_dataset_lifetime(job.outputdata.datasetname, outDsLocation)
except exceptions.SystemExit:
raise BackendError('Panda','Exception in adding dataset %s: %s %s'%(job.outputdata.datasetname,sys.exc_info()[0],sys.exc_info()[1]))
# JobSpec.
jspec = JobSpec()
jspec.currentPriority = app.priority
jspec.jobDefinitionID = masterjob.id
jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
jspec.coreCount = app.core_count
jspec.AtlasRelease = 'Atlas-%s' % app.atlas_release
jspec.homepackage = app.home_package
jspec.transformation = app.transformation
jspec.destinationDBlock = job.outputdata.datasetname
if job.outputdata.location:
jspec.destinationSE = job.outputdata.location
else:
jspec.destinationSE = job.backend.site
if job.inputdata:
jspec.prodDBlock = job.inputdata.dataset[0]
else:
jspec.prodDBlock = 'NULL'
if app.prod_source_label:
jspec.prodSourceLabel = app.prod_source_label
else:
jspec.prodSourceLabel = configPanda['prodSourceLabelRun']
jspec.processingType = configPanda['processingType']
jspec.specialHandling = configPanda['specialHandling']
jspec.computingSite = job.backend.site
jspec.cloud = job.backend.requirements.cloud
jspec.cmtConfig = app.atlas_cmtconfig
if app.dbrelease == 'LATEST':
try:
latest_dbrelease = getLatestDBReleaseCaching()
except:
from pandatools import Client
latest_dbrelease = Client.getLatestDBRelease()
m = re.search('(.*):DBRelease-(.*)\.tar\.gz', latest_dbrelease)
if m:
self.dbrelease_dataset = m.group(1)
self.dbrelease = m.group(2)
else:
raise ApplicationConfigurationError(None, "Error retrieving LATEST DBRelease. Try setting application.dbrelease manually.")
else:
self.dbrelease_dataset = app.dbrelease_dataset
self.dbrelease = app.dbrelease
jspec.jobParameters = app.job_parameters
if self.dbrelease:
if self.dbrelease == 'current':
jspec.jobParameters += ' --DBRelease=current'
else:
if jspec.transformation.endswith("_tf.py") or jspec.transformation.endswith("_tf"):
jspec.jobParameters += ' --DBRelease=DBRelease-%s.tar.gz' % (self.dbrelease,)
else:
jspec.jobParameters += ' DBRelease=DBRelease-%s.tar.gz' % (self.dbrelease,)
dbspec = FileSpec()
dbspec.lfn = 'DBRelease-%s.tar.gz' % self.dbrelease
dbspec.dataset = self.dbrelease_dataset
dbspec.prodDBlock = jspec.prodDBlock
dbspec.type = 'input'
jspec.addFile(dbspec)
if job.inputdata:
m = re.search('(.*)\.(.*)\.(.*)\.(.*)\.(.*)\.(.*)',
job.inputdata.dataset[0])
if not m:
logger.error("Error retrieving run number from dataset name")
#raise ApplicationConfigurationError(None, "Error retrieving run number from dataset name")
runnumber = 105200
else:
runnumber = int(m.group(2))
if jspec.transformation.endswith("_tf.py") or jspec.transformation.endswith("_tf"):
jspec.jobParameters += ' --runNumber %d' % runnumber
else:
jspec.jobParameters += ' RunNumber=%d' % runnumber
# Output files.
randomized_lfns = []
ilfn = 0
for lfn, lfntype in zip(app.output_files,app.output_type):
ofspec = FileSpec()
if app.randomize_lfns:
randomized_lfn = lfn + ('.%s.%d.%s' % (job.backend.site, int(time.time()), commands.getoutput('uuidgen 2> /dev/null')[:4] ) )
else:
randomized_lfn = lfn
ofspec.lfn = randomized_lfn
randomized_lfns.append(randomized_lfn)
ofspec.destinationDBlock = jspec.destinationDBlock
ofspec.destinationSE = jspec.destinationSE
ofspec.dataset = jspec.destinationDBlock
ofspec.type = 'output'
jspec.addFile(ofspec)
if jspec.transformation.endswith("_tf.py") or jspec.transformation.endswith("_tf"):
jspec.jobParameters += ' --output%sFile %s' % (lfntype, randomized_lfns[ilfn])
else:
jspec.jobParameters += ' output%sFile=%s' % (lfntype, randomized_lfns[ilfn])
ilfn=ilfn+1
# Input files.
if job.inputdata:
for guid, lfn, size, checksum, scope in zip(job.inputdata.guids, job.inputdata.names, job.inputdata.sizes, job.inputdata.checksums, job.inputdata.scopes):
ifspec = FileSpec()
ifspec.lfn = lfn
ifspec.GUID = guid
ifspec.fsize = size
ifspec.md5sum = checksum
ifspec.scope = scope
ifspec.dataset = jspec.prodDBlock
ifspec.prodDBlock = jspec.prodDBlock
ifspec.type = 'input'
jspec.addFile(ifspec)
if app.input_type:
itype = app.input_type
else:
itype = m.group(5)
if jspec.transformation.endswith("_tf.py") or jspec.transformation.endswith("_tf"):
jspec.jobParameters += ' --input%sFile %s' % (itype, ','.join(job.inputdata.names))
else:
jspec.jobParameters += ' input%sFile=%s' % (itype, ','.join(job.inputdata.names))
# Log files.
lfspec = FileSpec()
lfspec.lfn = '%s.job.log.tgz' % jspec.jobName
lfspec.destinationDBlock = jspec.destinationDBlock
lfspec.destinationSE = jspec.destinationSE
lfspec.dataset = jspec.destinationDBlock
lfspec.type = 'log'
jspec.addFile(lfspec)
return jspec
def defineEvgen16Job(self, i):
"""Define an Evgen16 job based on predefined values and randomly generated names
"""
job = JobSpec()
job.computingSite = self.__site
job.cloud = self.__cloud
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = "%s_%d" % (uuid.uuid1(), i)
job.AtlasRelease = 'Atlas-16.6.2'
job.homepackage = 'AtlasProduction/16.6.2.1'
job.transformation = 'Evgen_trf.py'
job.destinationDBlock = self.__datasetName
job.destinationSE = self.__destName
job.currentPriority = 10000
job.prodSourceLabel = 'test'
job.cmtConfig = 'i686-slc5-gcc43-opt'
#Output file
fileO = FileSpec()
fileO.lfn = "%s.evgen.pool.root" % job.jobName
fileO.destinationDBlock = job.destinationDBlock
fileO.destinationSE = job.destinationSE
fileO.dataset = job.destinationDBlock
fileO.destinationDBlockToken = 'ATLASDATADISK'
fileO.type = 'output'
job.addFile(fileO)
#Log file
fileL = FileSpec()
fileL.lfn = "%s.job.log.tgz" % job.jobName
fileL.destinationDBlock = job.destinationDBlock
fileL.destinationSE = job.destinationSE
fileL.dataset = job.destinationDBlock
fileL.destinationDBlockToken = 'ATLASDATADISK'
fileL.type = 'log'
job.addFile(fileL)
job.jobParameters = "2760 105048 19901 101 200 MC10.105048.PythiaB_ccmu3mu1X.py %s NONE NONE NONE MC10JobOpts-latest-test.tar.gz" % fileO.lfn
return job
def prepare(self, app, appsubconfig, appmasterconfig, jobmasterconfig):
'''prepare the subjob specific configuration'''
from pandatools import Client
from taskbuffer.JobSpec import JobSpec
from taskbuffer.FileSpec import FileSpec
job = app._getParent()
logger.debug('AthenaPandaRTHandler prepare called for %s',
job.getFQID('.'))
# in case of a simple job get the dataset content, otherwise subjobs are filled by the splitter
if job.inputdata and not job._getRoot().subjobs:
if not job.inputdata.names:
contents = job.inputdata.get_contents(overlap=False, size=True)
for ds in contents.keys():
for f in contents[ds]:
job.inputdata.guids.append(f[0])
job.inputdata.names.append(f[1][0])
job.inputdata.sizes.append(f[1][1])
job.inputdata.checksums.append(f[1][2])
job.inputdata.scopes.append(f[1][3])
site = job._getRoot().backend.site
job.backend.site = site
job.backend.actualCE = site
cloud = job._getRoot().backend.requirements.cloud
job.backend.requirements.cloud = cloud
# if no outputdata are given
if not job.outputdata:
job.outputdata = DQ2OutputDataset()
job.outputdata.datasetname = job._getRoot().outputdata.datasetname
#if not job.outputdata.datasetname:
else:
job.outputdata.datasetname = job._getRoot().outputdata.datasetname
if not job.outputdata.datasetname:
raise ApplicationConfigurationError(
None, 'DQ2OutputDataset has no datasetname')
jspec = JobSpec()
jspec.jobDefinitionID = job._getRoot().id
jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
jspec.transformation = '%s/runGen-00-00-02' % Client.baseURLSUB
if job.inputdata:
jspec.prodDBlock = job.inputdata.dataset[0]
else:
jspec.prodDBlock = 'NULL'
jspec.destinationDBlock = job.outputdata.datasetname
if job.outputdata.location:
if not job._getRoot().subjobs or job.id == 0:
logger.warning(
'You have specified outputdata.location. Note that Panda may not support writing to a user-defined output location.'
)
jspec.destinationSE = job.outputdata.location
else:
jspec.destinationSE = site
jspec.prodSourceLabel = configPanda['prodSourceLabelRun']
jspec.processingType = configPanda['processingType']
jspec.assignedPriority = configPanda['assignedPriorityRun']
jspec.cloud = cloud
# memory
if job.backend.requirements.memory != -1:
jspec.minRamCount = job.backend.requirements.memory
# cputime
if job.backend.requirements.cputime != -1:
jspec.maxCpuCount = job.backend.requirements.cputime
jspec.computingSite = site
# library (source files)
if job.backend.libds:
flib = FileSpec()
flib.lfn = self.fileBO.lfn
flib.GUID = self.fileBO.GUID
flib.type = 'input'
flib.status = self.fileBO.status
flib.dataset = self.fileBO.destinationDBlock
flib.dispatchDBlock = self.fileBO.destinationDBlock
jspec.addFile(flib)
elif job.backend.bexec:
flib = FileSpec()
flib.lfn = self.library
flib.type = 'input'
flib.dataset = self.libDataset
flib.dispatchDBlock = self.libDataset
jspec.addFile(flib)
# input files FIXME: many more input types
if job.inputdata:
for guid, lfn, size, checksum, scope in zip(
job.inputdata.guids, job.inputdata.names,
job.inputdata.sizes, job.inputdata.checksums,
job.inputdata.scopes):
finp = FileSpec()
finp.lfn = lfn
finp.GUID = guid
finp.scope = scope
# finp.fsize =
# finp.md5sum =
finp.dataset = job.inputdata.dataset[0]
finp.prodDBlock = job.inputdata.dataset[0]
finp.dispatchDBlock = job.inputdata.dataset[0]
finp.type = 'input'
finp.status = 'ready'
jspec.addFile(finp)
# output files
# outMap = {}
#FIXME: if options.outMeta != []:
self.rundirectory = "."
# log files
flog = FileSpec()
flog.lfn = '%s._$PANDAID.log.tgz' % job.outputdata.datasetname
flog.type = 'log'
flog.dataset = job.outputdata.datasetname
flog.destinationDBlock = job.outputdata.datasetname
flog.destinationSE = job.backend.site
jspec.addFile(flog)
# job parameters
param = ''
# source URL
matchURL = re.search("(http.*://[^/]+)/", Client.baseURLCSRVSSL)
srcURL = ""
if matchURL != None:
srcURL = matchURL.group(1)
param += " --sourceURL %s " % srcURL
param += '-r "%s" ' % self.rundirectory
exe_name = job.application.exe
if job.backend.bexec == '':
if hasattr(job.application.exe, "name"):
exe_name = os.path.basename(job.application.exe.name)
# set jobO parameter
if job.application.args:
param += ' -j "" -p "%s %s" ' % (
exe_name, urllib.quote(" ".join(job.application.args)))
else:
param += ' -j "" -p "%s" ' % exe_name
if self.inputsandbox:
param += ' -a %s ' % self.inputsandbox
else:
param += '-l %s ' % self.library
param += '-j "" -p "%s %s" ' % (
exe_name, urllib.quote(" ".join(job.application.args)))
if job.inputdata:
param += '-i "%s" ' % job.inputdata.names
# fill outfiles
outfiles = {}
for f in self.extOutFile:
tarnum = 1
if f.find('*') != -1:
# archive *
outfiles[f] = "outputbox%i.%s.%s.tar.gz" % (
tarnum, job.getFQID('.'), time.strftime("%Y%m%d%H%M%S"))
tarnum += 1
else:
outfiles[f] = "%s.%s.%s" % (f, job.getFQID('.'),
time.strftime("%Y%m%d%H%M%S"))
fout = FileSpec()
fout.lfn = outfiles[f]
fout.type = 'output'
fout.dataset = job.outputdata.datasetname
fout.destinationDBlock = job.outputdata.datasetname
fout.destinationSE = job.backend.site
jspec.addFile(fout)
param += '-o "%s" ' % (
outfiles
) # must be double quotes, because python prints strings in 'single quotes'
for file in jspec.Files:
if file.type in ['output', 'log'] and configPanda['chirpconfig']:
file.dispatchDBlockToken = configPanda['chirpconfig']
logger.debug('chirp file %s', file)
jspec.jobParameters = param
return jspec
job.jobName = "%s_%d" % (commands.getoutput('uuidgen'),index)
job.AtlasRelease = 'Atlas-14.1.0\nAtlas-14.1.0'
job.homepackage = 'AtlasProduction/14.1.0.3\nAtlasProduction/14.1.0.3'
job.transformation = 'csc_digi_trf.py\ncsc_reco_trf.py'
job.destinationDBlock = datasetName
job.computingSite = site
job.prodDBlock = 'valid1.005200.T1_McAtNlo_Jimmy.simul.HITS.e322_s429_tid022081'
job.prodSourceLabel = 'test'
job.currentPriority = 10000
job.cloud = 'US'
for lfn in ['HITS.022081._00001.pool.root','HITS.022081._00002.pool.root']:
fileI = FileSpec()
fileI.dataset = job.prodDBlock
fileI.prodDBlock = job.prodDBlock
fileI.lfn = lfn
fileI.type = 'input'
job.addFile(fileI)
fileD1 = FileSpec()
fileD1.dataset = 'ddo.000001.Atlas.Ideal.DBRelease.v050001'
fileD1.prodDBlock = fileD1.dataset
fileD1.lfn = 'DBRelease-5.0.1.tar.gz'
fileD1.type = 'input'
job.addFile(fileD1)
fileD2 = FileSpec()
fileD2.dataset = 'ddo.000001.Atlas.Ideal.DBRelease.v050101'
job.prodSourceLabel = 'managed'
# priority
job.assignedPriority = priority
job.currentPriority = priority
# CPU, memory,disk ### FIXME
# attempt number ### FIXME
# input files
if iDataset != 'NULL':
# remove _tidXXX
pat = re.sub('_tid\d+$','',iDataset)
# search
m = re.search('('+pat+'\S+)',line)
if m != None:
file = FileSpec()
file.lfn = m.group(1)
file.type = 'input'
file.dataset = iDataset
file.prodDBlock = iDataset
job.addFile(file)
# DB release
for i,lpar in enumerate(lparams):
if lpar == 'DBRelease':
file = FileSpec()
file.lfn = "%s-%s.tgz" % (lpar,vparams[i])
file.type = 'input'
file.dataset = iDataset
file.prodDBlock = iDataset
job.addFile(file)
break
# append pacball to arg
if pacFile != None:
argStr += "--pacball %s " % pacFile
job = JobSpec()
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = "%s_%s" % (siteName,commands.getoutput('uuidgen'))
job.transformation = 'http://www.usatlas.bnl.gov/svn/panda/apps/sw/installAtlasSW'
job.destinationDBlock = 'panda.%s' % job.jobName
job.currentPriority = 10000
job.prodSourceLabel = 'software'
job.computingSite = siteName
job.cloud = 'US'
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % job.jobName
fileOL.destinationDBlock = job.destinationDBlock
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
job.addFile(fileOL)
# pacball
if pacDS != None:
job.prodDBlock = pacDS
fileP = FileSpec()
fileP.dataset = pacDS
fileP.prodDBlock = pacDS
fileP.lfn = pacFile
fileP.type = 'input'
job.addFile(fileP)
def send_merging_job(task, files_list, merge_chunk_number):
logger.info(
'Going to send merging job for task %s run number %s and merge chunk number %s'
% (task, files_list[0].run_number, merge_chunk_number))
input_files = ''
input_files_copy = ''
for j in files_list:
TMPMDSTFILE = 'mDST-%(runNumber)s-%(runChunk)s-%(prodSlt)s-%(phastVer)s.root' % {
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt,
'phastVer': j.task.phastver
}
input_files += ' ' + TMPMDSTFILE
if j.task.site == 'BW_COMPASS_MCORE':
input_files_copy += ' cp /scratch/sciteam/criedl/projectdata/' + task.path + task.soft + '/mDST.chunks/' + TMPMDSTFILE + ' .;'
else:
input_files_copy += ' xrdcp -N -f root://eoscompass.cern.ch//eos/experiment/compass/' + task.path + task.soft + '/mDST.chunks/' + TMPMDSTFILE + ' .;'
datasetName = '%(prodNameOnly)s.%(runNumber)s-%(prodSlt)s-%(phastVer)s-merging-mdst' % {
'prodNameOnly': task.production,
'runNumber': j.run_number,
'prodSlt': task.prodslt,
'phastVer': task.phastver
}
logger.info(datasetName)
destName = 'local' # PanDA will not try to move output data, data will be placed by pilot (based on schedconfig)
MERGEDHISTFILE = '%(runNumber)s-%(prodSlt)s-%(phastVer)s.root' % {
'runNumber': j.run_number,
'prodSlt': task.prodslt,
'phastVer': task.phastver
}
if format(merge_chunk_number, '03d') != '000':
MERGEDHISTFILE = MERGEDHISTFILE + '.' + format(merge_chunk_number,
'03d')
logger.info(MERGEDHISTFILE)
MERGEDMDSTFILE = 'mDST-%(runNumber)s-%(prodSlt)s-%(phastVer)s.root' % {
'runNumber': j.run_number,
'prodSlt': task.prodslt,
'phastVer': task.phastver
}
if format(merge_chunk_number, '03d') != '000':
MERGEDMDSTFILE = MERGEDMDSTFILE + '.' + format(merge_chunk_number,
'03d')
logger.info(MERGEDMDSTFILE)
TMPHISTFILE = 'merge-%(runNumber)s-ch%(mergeChunkNumber)s.root' % {
'runNumber': j.run_number,
'mergeChunkNumber': format(merge_chunk_number, '03d')
}
logger.info(TMPHISTFILE)
PRODSOFT = task.soft
ProdPathAndName = task.home + task.path + task.soft
job = JobSpec()
job.VO = 'vo.compass.cern.ch'
job.taskID = task.id
job.jobDefinitionID = 0
job.jobName = '%(prodNameOnly)s-merge-mdst-%(runNumber)s-ch%(mergeChunkNumber)s' % {
'prodNameOnly': task.production,
'runNumber': j.run_number,
'mergeChunkNumber': format(merge_chunk_number, '03d')
}
job.transformation = 'merging mdst' # payload (can be URL as well)
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 5000
job.prodSourceLabel = 'prod_test'
job.computingSite = task.site
job.attemptNr = j.attempt_merging_mdst + 1
job.maxAttempt = j.task.max_attempts
if j.status_merging_mdst == 'failed':
job.parentID = j.panda_id_merging_mdst
if j.task.site == 'BW_COMPASS_MCORE':
job.jobParameters = 'ppwd=$(pwd);ppwd=$(pwd);export COMPASS_SW_PREFIX=/scratch/sciteam/criedl/projectdata/;export COMPASS_SW_PATH=%(prodPath)s;export COMPASS_PROD_NAME=%(prodName)s;export prodSlt=%(prodSlt)s;export MERGEDHISTFILE=%(MERGEDHISTFILE)s;export MERGEDMDSTFILE=%(MERGEDMDSTFILE)s;export TMPHISTFILE=%(TMPHISTFILE)s;export PRODSOFT=%(PRODSOFT)s;coralpath=%(ProdPathAndName)s/coral;cd -P $coralpath;export coralpathsetup=$coralpath"/setup.sh";source $coralpathsetup;cd $ppwd;%(input_files_copy)sexport PHAST_mDST_MAX_SIZE=6000000000;$CORAL/../phast/phast -m -o %(MERGEDMDSTFILE)s %(input_files)s;cp payload_stderr.txt payload_stderr.out;cp payload_stdout.txt payload_stdout.out;gzip payload_stdout.out;' % {
'MERGEDHISTFILE': MERGEDHISTFILE,
'MERGEDMDSTFILE': MERGEDMDSTFILE,
'PRODSOFT': PRODSOFT,
'input_files_copy': input_files_copy,
'input_files': input_files,
'ProdPathAndName': ProdPathAndName,
'prodPath': task.path,
'prodName': task.production,
'prodSlt': task.prodslt,
'TMPHISTFILE': TMPHISTFILE
}
else:
job.jobParameters = 'export EOS_MGM_URL=root://eoscompass.cern.ch;ppwd=$(pwd);ppwd=$(pwd);export COMPASS_SW_PREFIX=/eos/experiment/compass/;export COMPASS_SW_PATH=%(prodPath)s;export COMPASS_PROD_NAME=%(prodName)s;export prodSlt=%(prodSlt)s;export MERGEDHISTFILE=%(MERGEDHISTFILE)s;export MERGEDMDSTFILE=%(MERGEDMDSTFILE)s;export TMPHISTFILE=%(TMPHISTFILE)s;export PRODSOFT=%(PRODSOFT)s;coralpath=%(ProdPathAndName)s/coral;cd -P $coralpath;export coralpathsetup=$coralpath"/setup.sh";source $coralpathsetup;cd $ppwd;%(input_files_copy)sexport PHAST_mDST_MAX_SIZE=6000000000;$CORAL/../phast/phast -m -o %(MERGEDMDSTFILE)s %(input_files)s;cp payload_stderr.txt payload_stderr.out;cp payload_stdout.txt payload_stdout.out;gzip payload_stdout.out;' % {
'MERGEDHISTFILE': MERGEDHISTFILE,
'MERGEDMDSTFILE': MERGEDMDSTFILE,
'PRODSOFT': PRODSOFT,
'input_files_copy': input_files_copy,
'input_files': input_files,
'ProdPathAndName': ProdPathAndName,
'prodPath': task.path,
'prodName': task.production,
'prodSlt': task.prodslt,
'TMPHISTFILE': TMPHISTFILE
}
fileOLog = FileSpec()
fileOLog.lfn = "%s.job.log.tgz" % (job.jobName)
fileOLog.destinationDBlock = job.destinationDBlock
fileOLog.destinationSE = job.destinationSE
fileOLog.dataset = job.destinationDBlock
fileOLog.type = 'log'
job.addFile(fileOLog)
fileOmDST = FileSpec()
fileOmDST.lfn = "%s" % (MERGEDMDSTFILE)
fileOmDST.destinationDBlock = job.destinationDBlock
fileOmDST.destinationSE = job.destinationSE
fileOmDST.dataset = job.destinationDBlock
fileOmDST.type = 'output'
job.addFile(fileOmDST)
fileOstdout = FileSpec()
fileOstdout.lfn = "payload_stdout.out.gz"
fileOstdout.destinationDBlock = job.destinationDBlock
fileOstdout.destinationSE = job.destinationSE
fileOstdout.dataset = job.destinationDBlock
fileOstdout.type = 'output'
job.addFile(fileOstdout)
# fileOstderr = FileSpec()
# fileOstderr.lfn = "payload_stderr.txt"
# fileOstderr.destinationDBlock = job.destinationDBlock
# fileOstderr.destinationSE = job.destinationSE
# fileOstderr.dataset = job.destinationDBlock
# fileOstderr.type = 'output'
# job.addFile(fileOstderr)
s, o = Client.submitJobs([job], srvID=aSrvID)
logger.info(s)
for x in o:
logger.info("PandaID=%s" % x[0])
if x[0] != 0 and x[0] != 'NULL':
for j in files_list:
j_update = Job.objects.get(id=j.id)
j_update.panda_id_merging_mdst = x[0]
j_update.status_merging_mdst = 'sent'
j_update.attempt_merging_mdst = j_update.attempt_merging_mdst + 1
j_update.chunk_number_merging_mdst = merge_chunk_number
j_update.date_updated = today
try:
j_update.save()
logger.info('Job %s with PandaID %s updated' %
(j.id, x[0]))
except IntegrityError as e:
logger.exception('Unique together catched, was not saved')
except DatabaseError as e:
logger.exception('Something went wrong while saving: %s' %
e.message)
else:
logger.info('Job %s was not added to PanDA' % j.id)
def send_merging_job(task, files_list, merge_chunk_number):
logger.info(
'Going to send merging job for task %s run number %s and merge chunk number %s'
% (task, files_list[0].run_number, merge_chunk_number))
input_files_copy = ''
input_files_rm = ''
for j in files_list:
TMPDUMPFILE = 'evtdump%(prodSlt)s-%(runChunk)s-%(runNumber)s.raw' % {
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt
}
if j.task.site == 'BW_COMPASS_MCORE':
input_files_copy += ' cp $dumpspath/' + TMPDUMPFILE + ' .;'
else:
input_files_copy += ' xrdcp -N -f $dumpspath/' + TMPDUMPFILE + ' .;'
datasetName = '%(prodNameOnly)s.%(runNumber)s-%(prodSlt)s-%(phastVer)s-merging-dump' % {
'prodNameOnly': task.production,
'runNumber': j.run_number,
'prodSlt': task.prodslt,
'phastVer': task.phastver
}
logger.info(datasetName)
destName = 'local' # PanDA will not try to move output data, data will be placed by pilot (based on schedconfig)
MERGEDDUMPFILE = 'evtdump%(prodSlt)s-%(runNumber)s.raw' % {
'runNumber': j.run_number,
'prodSlt': task.prodslt
}
if format(merge_chunk_number, '03d') != '000':
MERGEDDUMPFILE = MERGEDDUMPFILE + '.' + format(merge_chunk_number,
'03d')
logger.info(MERGEDDUMPFILE)
PRODSOFT = task.soft
ProdPathAndName = task.home + task.path + task.soft
if j.task.site == 'BW_COMPASS_MCORE':
dumpsPath = '/scratch/sciteam/criedl/projectdata/' + task.path + task.soft + '/evtdump/slot' + str(
task.prodslt)
else:
dumpsPath = 'root://eoscompass.cern.ch//eos/experiment/compass/' + task.path + task.soft + '/evtdump/slot' + str(
task.prodslt)
job = JobSpec()
job.VO = 'vo.compass.cern.ch'
job.taskID = task.id
job.jobDefinitionID = 0
job.jobName = '%(prodNameOnly)s-merge-dump-%(runNumber)s-ch%(mergeChunkNumber)s' % {
'prodNameOnly': task.production,
'runNumber': j.run_number,
'mergeChunkNumber': format(merge_chunk_number, '03d')
}
job.transformation = 'merging dump' # payload (can be URL as well)
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 5000
job.prodSourceLabel = 'prod_test'
job.computingSite = task.site
job.attemptNr = j.attempt_merging_evntdmp + 1
job.maxAttempt = j.task.max_attempts
if j.status_merging_evntdmp == 'failed':
job.parentID = j.panda_id_merging_evntdmp
if j.task.site == 'BW_COMPASS_MCORE':
job.jobParameters = 'ppwd=$(pwd);ppwd=$(pwd);export COMPASS_SW_PREFIX=/scratch/sciteam/criedl/projectdata/;export COMPASS_SW_PATH=%(prodPath)s;export COMPASS_PROD_NAME=%(prodName)s;export prodSlt=%(prodSlt)s;export MERGEDDUMPFILE=%(MERGEDDUMPFILE)s;export dumpspath=%(dumpsPath)s;export PRODSOFT=%(PRODSOFT)s;%(input_files_copy)scat evtdump%(prodSlt)s-*-*.raw > %(MERGEDDUMPFILE)s;rm evtdump%(prodSlt)s-*-*.raw;' % {
'MERGEDDUMPFILE': MERGEDDUMPFILE,
'dumpsPath': dumpsPath,
'PRODSOFT': PRODSOFT,
'input_files_copy': input_files_copy,
'ProdPathAndName': ProdPathAndName,
'prodPath': task.path,
'prodName': task.production,
'prodSlt': task.prodslt
}
else:
job.jobParameters = 'export EOS_MGM_URL=root://eoscompass.cern.ch;ppwd=$(pwd);ppwd=$(pwd);export COMPASS_SW_PREFIX=/eos/experiment/compass/;export COMPASS_SW_PATH=%(prodPath)s;export COMPASS_PROD_NAME=%(prodName)s;export prodSlt=%(prodSlt)s;export MERGEDDUMPFILE=%(MERGEDDUMPFILE)s;export dumpspath=%(dumpsPath)s;export PRODSOFT=%(PRODSOFT)s;%(input_files_copy)scat evtdump%(prodSlt)s-*-*.raw > %(MERGEDDUMPFILE)s;rm evtdump%(prodSlt)s-*-*.raw;' % {
'MERGEDDUMPFILE': MERGEDDUMPFILE,
'dumpsPath': dumpsPath,
'PRODSOFT': PRODSOFT,
'input_files_copy': input_files_copy,
'ProdPathAndName': ProdPathAndName,
'prodPath': task.path,
'prodName': task.production,
'prodSlt': task.prodslt
}
fileOLog = FileSpec()
fileOLog.lfn = "%s.job.log.tgz" % (job.jobName)
fileOLog.destinationDBlock = job.destinationDBlock
fileOLog.destinationSE = job.destinationSE
fileOLog.dataset = job.destinationDBlock
fileOLog.type = 'log'
job.addFile(fileOLog)
fileOdump = FileSpec()
fileOdump.lfn = "%s" % (MERGEDDUMPFILE)
fileOdump.destinationDBlock = job.destinationDBlock
fileOdump.destinationSE = job.destinationSE
fileOdump.dataset = job.destinationDBlock
fileOdump.type = 'output'
job.addFile(fileOdump)
# fileOstdout = FileSpec()
# fileOstdout.lfn = "payload_stdout.txt"
# fileOstdout.destinationDBlock = job.destinationDBlock
# fileOstdout.destinationSE = job.destinationSE
# fileOstdout.dataset = job.destinationDBlock
# fileOstdout.type = 'output'
# job.addFile(fileOstdout)
# fileOstderr = FileSpec()
# fileOstderr.lfn = "payload_stderr.txt"
# fileOstderr.destinationDBlock = job.destinationDBlock
# fileOstderr.destinationSE = job.destinationSE
# fileOstderr.dataset = job.destinationDBlock
# fileOstderr.type = 'output'
# job.addFile(fileOstderr)
s, o = Client.submitJobs([job], srvID=aSrvID)
logger.info(s)
for x in o:
logger.info("PandaID=%s" % x[0])
if x[0] != 0 and x[0] != 'NULL':
for j in files_list:
j_update = Job.objects.get(id=j.id)
j_update.panda_id_merging_evntdmp = x[0]
j_update.status_merging_evntdmp = 'sent'
j_update.attempt_merging_evntdmp = j_update.attempt_merging_evntdmp + 1
j_update.chunk_number_merging_evntdmp = merge_chunk_number
j_update.date_updated = today
try:
j_update.save()
logger.info('Job %s with PandaID %s updated' %
(j.id, x[0]))
except IntegrityError as e:
logger.exception('Unique together catched, was not saved')
except DatabaseError as e:
logger.exception('Something went wrong while saving: %s' %
e.message)
else:
logger.info('Job %s was not added to PanDA' % j.id)
for i in range(2):
job = JobSpec()
job.jobDefinitionID = jobDefinitionID
job.jobName = "%s_%d" % (commands.getoutput('uuidgen'), i)
job.AtlasRelease = 'Atlas-12.0.6'
job.homepackage = 'AnalysisTransforms'
job.transformation = 'https://gridui01.usatlas.bnl.gov:24443/dav/test/runAthenaXrd'
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 3000
job.assignedPriority = 3000
job.prodSourceLabel = 'user'
job.computingSite = site
file = FileSpec()
file.lfn = "%s.AANT._%05d.root" % (job.jobName, i)
file.destinationDBlock = job.destinationDBlock
file.destinationSE = job.destinationSE
file.dataset = job.destinationDBlock
file.type = 'output'
job.addFile(file)
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % job.jobName
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
job.addFile(fileOL)
def send_job(jobid, siteid):
_logger.debug('Jobid: ' + str(jobid))
site = sites_.get(siteid)
job = jobs_.get(int(jobid))
cont = job.container
files_catalog = cont.files
fscope = getScope(job.owner.username)
datasetName = '{}:{}'.format(fscope, cont.guid)
distributive = job.distr.name
release = job.distr.release
# Prepare runScript
parameters = job.distr.command
parameters = parameters.replace("$COMMAND$", job.params)
parameters = parameters.replace("$USERNAME$", job.owner.username)
parameters = parameters.replace("$WORKINGGROUP$", job.owner.working_group)
# Prepare metadata
metadata = dict(user=job.owner.username)
# Prepare PanDA Object
pandajob = JobSpec()
pandajob.jobDefinitionID = int(time.time()) % 10000
pandajob.jobName = cont.guid
pandajob.transformation = client_config.DEFAULT_TRF
pandajob.destinationDBlock = datasetName
pandajob.destinationSE = site.se
pandajob.currentPriority = 1000
pandajob.prodSourceLabel = 'user'
pandajob.computingSite = site.ce
pandajob.cloud = 'RU'
pandajob.VO = 'atlas'
pandajob.prodDBlock = "%s:%s" % (fscope, pandajob.jobName)
pandajob.coreCount = job.corecount
pandajob.metadata = json.dumps(metadata)
#pandajob.workingGroup = job.owner.working_group
if site.encode_commands:
# It requires script wrapper on cluster side
pandajob.jobParameters = '%s %s %s "%s"' % (cont.guid, release, distributive, parameters)
else:
pandajob.jobParameters = parameters
has_input = False
for fcc in files_catalog:
if fcc.type == 'input':
f = fcc.file
guid = f.guid
fileIT = FileSpec()
fileIT.lfn = f.lfn
fileIT.dataset = pandajob.prodDBlock
fileIT.prodDBlock = pandajob.prodDBlock
fileIT.type = 'input'
fileIT.scope = fscope
fileIT.status = 'ready'
fileIT.GUID = guid
pandajob.addFile(fileIT)
has_input = True
if fcc.type == 'output':
f = fcc.file
fileOT = FileSpec()
fileOT.lfn = f.lfn
fileOT.destinationDBlock = pandajob.prodDBlock
fileOT.destinationSE = pandajob.destinationSE
fileOT.dataset = pandajob.prodDBlock
fileOT.type = 'output'
fileOT.scope = fscope
fileOT.GUID = f.guid
pandajob.addFile(fileOT)
# Save replica meta
fc.new_replica(f, site)
if not has_input:
# Add fake input
fileIT = FileSpec()
fileIT.lfn = "fake.input"
fileIT.dataset = pandajob.prodDBlock
fileIT.prodDBlock = pandajob.prodDBlock
fileIT.type = 'input'
fileIT.scope = fscope
fileIT.status = 'ready'
fileIT.GUID = "fake.guid"
pandajob.addFile(fileIT)
# Prepare lof file
fileOL = FileSpec()
fileOL.lfn = "%s.log.tgz" % pandajob.jobName
fileOL.destinationDBlock = pandajob.destinationDBlock
fileOL.destinationSE = pandajob.destinationSE
fileOL.dataset = '{}:logs'.format(fscope)
fileOL.type = 'log'
fileOL.scope = 'panda'
pandajob.addFile(fileOL)
# Save log meta
log = File()
log.scope = fscope
log.lfn = fileOL.lfn
log.guid = getGUID(log.scope, log.lfn)
log.type = 'log'
log.status = 'defined'
files_.save(log)
# Save replica meta
fc.new_replica(log, site)
# Register file in container
fc.reg_file_in_cont(log, cont, 'log')
# Submit job
o = submitJobs([pandajob])
x = o[0]
try:
#update PandaID
PandaID = int(x[0])
job.pandaid = PandaID
job.ce = site.ce
except:
job.status = 'submit_error'
jobs_.save(job)
return 0
import getpass
passwd = getpass.getpass()
pool = DBProxyPool('adbpro.usatlas.bnl.gov', passwd, 2)
proxy = pool.getProxy()
import sys
import commands
job1 = JobSpec()
job1.PandaID = 'NULL'
job1.jobStatus = 'unknown'
job1.computingSite = "aaa"
f11 = FileSpec()
f11.lfn = 'in1.pool.root'
f11.type = 'input'
job1.addFile(f11)
f12 = FileSpec()
f12.lfn = 'out1.pool.root'
f12.type = 'output'
job1.addFile(f12)
job2 = JobSpec()
job2.PandaID = 'NULL'
job2.jobStatus = 'unknown'
job2.computingSite = "bbb"
f21 = FileSpec()
f21.lfn = 'in2.pool.root'
f21.type = 'input'
def main():
logger.info('Getting tasks with status send and running')
tasks_list = Task.objects.all().filter(
Q(status='send') | Q(status='running'))
#tasks_list = Task.objects.all().filter(name='dvcs2017align7_mu-')
logger.info('Got list of %s tasks' % len(tasks_list))
cdbServerArr = ['compassvm23.cern.ch', 'compassvm24.cern.ch']
cdbServer = cdbServerArr[0]
for t in tasks_list:
max_send_amount = 1000
logger.info('Getting jobs in status staged or failed for task %s' % t)
jobs_list_count = Job.objects.all().filter(task=t).filter(
attempt__lt=t.max_attempts).filter(
Q(status='staged') | Q(status='failed')).count()
if jobs_list_count > 50:
jobs_list = Job.objects.all().filter(task=t).filter(
attempt__lt=t.max_attempts).filter(
Q(status='staged') | Q(status='failed')).order_by(
'-number_of_events')[:max_send_amount]
else:
jobs_list = Job.objects.all().filter(task=t).filter(
attempt__lt=t.max_attempts).filter(
Q(status='staged') | Q(status='failed')).order_by(
'-number_of_events')[:jobs_list_count]
logger.info('Got list of %s jobs' % len(jobs_list))
# jobs_list = Job.objects.all().filter(task=t).filter(file='/castor/cern.ch/compass/data/2017/raw/W04/cdr12116-278485.raw')
i = 0
for j in jobs_list:
if j.attempt >= j.task.max_attempts:
logger.info(
'Number of retry attempts has reached for job %s of task %s'
% (j.file, j.task.name))
continue
if i > max_send_amount:
break
logger.info('Job %s of %s' % (i, max_send_amount))
logger.info('Going to send job %s of %s task' %
(j.file, j.task.name))
umark = commands.getoutput('uuidgen')
datasetName = 'panda.destDB.%s' % umark
destName = 'local' # PanDA will not try to move output data, data will be placed by pilot (based on schedconfig)
TMPRAWFILE = j.file[j.file.rfind('/') + 1:]
logger.info(TMPRAWFILE)
TMPMDSTFILE = 'mDST-%(runNumber)s-%(runChunk)s-%(prodSlt)s-%(phastVer)s.root' % {
'input_file': j.file,
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt,
'phastVer': j.task.phastver
}
logger.info(TMPMDSTFILE)
TMPHISTFILE = '%(runNumber)s-%(runChunk)s-%(prodSlt)s.root' % {
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt
}
logger.info(TMPHISTFILE)
TMPRICHFILE = 'gfile_%(runNumber)s-%(runChunk)s.gfile' % {
'runNumber': j.run_number,
'runChunk': j.chunk_number
}
logger.info(TMPRICHFILE)
EVTDUMPFILE = 'evtdump%(prodSlt)s-%(runChunk)s-%(runNumber)s.raw' % {
'prodSlt': j.task.prodslt,
'runNumber': j.run_number,
'runChunk': j.chunk_number
}
logger.info(EVTDUMPFILE)
STDOUTFILE = '%(prodNameOnly)s.%(runNumber)s-%(runChunk)s-%(prodSlt)s.stdout' % {
'prodNameOnly': j.task.production,
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt
}
logger.info(STDOUTFILE)
STDERRFILE = '%(prodNameOnly)s.%(runNumber)s-%(runChunk)s-%(prodSlt)s.stderr' % {
'prodNameOnly': j.task.production,
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt
}
logger.info(STDERRFILE)
PRODSOFT = j.task.soft
logger.info(PRODSOFT)
ProdPathAndName = j.task.home + j.task.path + j.task.soft
job = JobSpec()
job.VO = 'vo.compass.cern.ch'
job.taskID = j.task.id
job.jobDefinitionID = 0
job.jobName = '%(prodName)s-%(fileYear)s--%(runNumber)s-%(runChunk)s-%(prodSlt)s-%(phastVer)s' % {
'prodName': j.task.production,
'fileYear': j.task.year,
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt,
'phastVer': j.task.phastver
}
job.transformation = j.task.type # payload (can be URL as well)
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 2000
if j.task.type == 'DDD filtering':
job.currentPriority = 1000
job.prodSourceLabel = 'prod_test'
job.computingSite = j.task.site
job.attemptNr = j.attempt + 1
job.maxAttempt = j.task.max_attempts
if j.status == 'failed':
job.parentID = j.panda_id
head, tail = os.path.split(j.file)
cdbServer = cdbServerArr[random.randrange(len(cdbServerArr))]
# logs, and all files generated during execution will be placed in log (except output file)
#job.jobParameters='source /afs/cern.ch/project/eos/installation/compass/etc/setup.sh;export EOS_MGM_URL=root://eoscompass.cern.ch;export PATH=/afs/cern.ch/project/eos/installation/compass/bin:$PATH;ppwd=$(pwd);echo $ppwd;export TMPMDSTFILE=%(TMPMDSTFILE)s;export TMPHISTFILE=%(TMPHISTFILE)s;export TMPRICHFILE=%(TMPRICHFILE)s;coralpath=%(ProdPathAndName)s/coral;echo $coralpath;cd -P $coralpath;export coralpathsetup=$coralpath"/setup.sh";echo $coralpathsetup;source $coralpathsetup;cd $ppwd;$CORAL/../phast/coral/coral.exe %(ProdPathAndName)s/template.opt;xrdcp -np $ppwd/%(TMPMDSTFILE)s xroot://eoscompass.cern.ch//eos/compass/%(prodName)s/mDST/%(TMPMDSTFILE)s;xrdcp -np $ppwd/%(TMPHISTFILE)s xroot://eoscompass.cern.ch//eos/compass/%(prodName)s/histos/%(TMPHISTFILE)s;metadataxml=$(ls metadata-*);echo $metadataxml;cp $metadataxml $metadataxml.PAYLOAD;' % {'TMPMDSTFILE': TMPMDSTFILE, 'TMPHISTFILE': TMPHISTFILE, 'TMPRICHFILE': TMPRICHFILE, 'input_file': input_file, 'ProdPathAndName': ProdPathAndName, 'prodName': prodName}
if j.task.type == 'test production' or j.task.type == 'mass production' or j.task.type == 'technical production':
if j.task.site == 'BW_COMPASS_MCORE':
job.jobParameters = 'ppwd=$(pwd);export COMPASS_SW_PREFIX=/scratch/sciteam/criedl/projectdata/;export COMPASS_SW_PATH=%(prodPath)s;export COMPASS_PROD_NAME=%(prodName)s;export TMPRAWFILE=%(TMPRAWFILE)s;export TMPMDSTFILE=%(TMPMDSTFILE)s;export TMPHISTFILE=%(TMPHISTFILE)s;export TMPRICHFILE=%(TMPRICHFILE)s;export prodSlt=%(prodSlt)s;export EVTDUMPFILE=%(EVTDUMPFILE)s;export PRODSOFT=%(PRODSOFT)s;cp %(input_file)s .;coralpath=%(ProdPathAndName)s/coral;cd -P $coralpath;export coralpathsetup=$coralpath"/setup.sh";source $coralpathsetup;cd $ppwd;$CORAL/../phast/coral/coral.exe %(ProdPathAndName)s/%(template)s;if [ ! -s testevtdump.raw ]; then echo "PanDA message: the file is empty">testevtdump.raw; fi;cp payload_stderr.txt payload_stderr.out;cp payload_stdout.txt payload_stdout.out;gzip payload_stderr.out;gzip payload_stdout.out;rm %(tail)s' % {
'TMPRAWFILE': TMPRAWFILE,
'TMPMDSTFILE': TMPMDSTFILE,
'TMPHISTFILE': TMPHISTFILE,
'TMPRICHFILE': TMPRICHFILE,
'PRODSOFT': PRODSOFT,
'input_file': j.file,
'ProdPathAndName': ProdPathAndName,
'prodPath': j.task.path,
'prodName': j.task.production,
'template': j.task.template,
'tail': tail,
'prodSlt': j.task.prodslt,
'EVTDUMPFILE': EVTDUMPFILE,
'STDOUTFILE': STDOUTFILE,
'STDERRFILE': STDERRFILE
}
else:
job.jobParameters = 'export EOS_MGM_URL=root://eoscompass.cern.ch;ppwd=$(pwd);export COMPASS_SW_PREFIX=/eos/experiment/compass/;export COMPASS_SW_PATH=%(prodPath)s;export COMPASS_PROD_NAME=%(prodName)s;export TMPRAWFILE=%(TMPRAWFILE)s;export TMPMDSTFILE=%(TMPMDSTFILE)s;export TMPHISTFILE=%(TMPHISTFILE)s;export TMPRICHFILE=%(TMPRICHFILE)s;export prodSlt=%(prodSlt)s;export EVTDUMPFILE=%(EVTDUMPFILE)s;export PRODSOFT=%(PRODSOFT)s;xrdcp -N -f root://castorpublic.cern.ch/%(input_file)s\?svcClass=compasscdr .;coralpath=%(ProdPathAndName)s/coral;cd -P $coralpath;export coralpathsetup=$coralpath"/setup.sh";source $coralpathsetup;cd $ppwd;export CDBSERVER=%(cdbServer)s;$CORAL/../phast/coral/coral.exe %(ProdPathAndName)s/%(template)s;if [ ! -s testevtdump.raw ]; then echo "PanDA message: the file is empty">testevtdump.raw; fi;cp payload_stderr.txt payload_stderr.out;cp payload_stdout.txt payload_stdout.out;gzip payload_stderr.out;gzip payload_stdout.out;rm %(tail)s' % {
'TMPRAWFILE': TMPRAWFILE,
'TMPMDSTFILE': TMPMDSTFILE,
'TMPHISTFILE': TMPHISTFILE,
'TMPRICHFILE': TMPRICHFILE,
'PRODSOFT': PRODSOFT,
'input_file': j.file,
'ProdPathAndName': ProdPathAndName,
'prodPath': j.task.path,
'prodName': j.task.production,
'template': j.task.template,
'tail': tail,
'prodSlt': j.task.prodslt,
'EVTDUMPFILE': EVTDUMPFILE,
'STDOUTFILE': STDOUTFILE,
'STDERRFILE': STDERRFILE,
'cdbServer': cdbServer
}
if j.task.type == 'DDD filtering':
job.jobParameters = 'export EOS_MGM_URL=root://eoscompass.cern.ch;ppwd=$(pwd);export COMPASS_SW_PREFIX=/eos/experiment/compass/;export COMPASS_SW_PATH=%(prodPath)s;export COMPASS_PROD_NAME=%(prodName)s;export TMPRAWFILE=%(TMPRAWFILE)s;export TMPMDSTFILE=%(TMPMDSTFILE)s;export TMPHISTFILE=%(TMPHISTFILE)s;export TMPRICHFILE=%(TMPRICHFILE)s;export prodSlt=%(prodSlt)s;export EVTDUMPFILE=%(EVTDUMPFILE)s;export PRODSOFT=%(PRODSOFT)s;xrdcp -N -f root://castorpublic.cern.ch/%(input_file)s\?svcClass=compasscdr .;coralpath=%(ProdPathAndName)s/coral;cd -P $coralpath;export coralpathsetup=$coralpath"/setup.sh";source $coralpathsetup;cd $ppwd;$CORAL/src/DaqDataDecoding/examples/how-to/ddd --filter-CAL --out=testevtdump.raw %(TMPRAWFILE)s;if [ ! -s testevtdump.raw ]; then echo "PanDA message: the file is empty">testevtdump.raw; fi;cp payload_stderr.txt payload_stderr.out;cp payload_stdout.txt payload_stdout.out;gzip payload_stderr.out;gzip payload_stdout.out;rm %(tail)s' % {
'TMPRAWFILE': TMPRAWFILE,
'TMPMDSTFILE': TMPMDSTFILE,
'TMPHISTFILE': TMPHISTFILE,
'TMPRICHFILE': TMPRICHFILE,
'PRODSOFT': PRODSOFT,
'input_file': j.file,
'ProdPathAndName': ProdPathAndName,
'prodPath': j.task.path,
'prodName': j.task.production,
'template': j.task.template,
'tail': tail,
'prodSlt': j.task.prodslt,
'EVTDUMPFILE': EVTDUMPFILE,
'STDOUTFILE': STDOUTFILE,
'STDERRFILE': STDERRFILE
}
# fileIRaw = FileSpec()
# fileIRaw.lfn = "%s" % (input_file)
# fileIRaw.destinationDBlock = job.destinationDBlock
# fileIRaw.destinationSE = job.destinationSE
# fileIRaw.dataset = job.destinationDBlock
# fileIRaw.type = 'input'
# job.addFile(fileIRaw)
fileOstdout = FileSpec()
fileOstdout.lfn = "payload_stdout.out.gz"
fileOstdout.destinationDBlock = job.destinationDBlock
fileOstdout.destinationSE = job.destinationSE
fileOstdout.dataset = job.destinationDBlock
fileOstdout.type = 'output'
job.addFile(fileOstdout)
fileOstderr = FileSpec()
fileOstderr.lfn = "payload_stderr.out.gz"
fileOstderr.destinationDBlock = job.destinationDBlock
fileOstderr.destinationSE = job.destinationSE
fileOstderr.dataset = job.destinationDBlock
fileOstderr.type = 'output'
job.addFile(fileOstderr)
fileOLog = FileSpec()
fileOLog.lfn = "%(prodName)s-%(runNumber)s-%(runChunk)s-%(prodSlt)s-%(phastVer)s.job.log.tgz" % {
'prodName': j.task.production,
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt,
'phastVer': j.task.phastver
}
fileOLog.destinationDBlock = job.destinationDBlock
fileOLog.destinationSE = job.destinationSE
fileOLog.dataset = job.destinationDBlock
fileOLog.type = 'log'
job.addFile(fileOLog)
if j.task.type == 'test production' or j.task.type == 'mass production' or j.task.type == 'technical production':
fileOmDST = FileSpec()
fileOmDST.lfn = "%s" % (TMPMDSTFILE)
fileOmDST.destinationDBlock = job.destinationDBlock
fileOmDST.destinationSE = job.destinationSE
fileOmDST.dataset = job.destinationDBlock
fileOmDST.type = 'output'
job.addFile(fileOmDST)
fileOTrafdic = FileSpec()
fileOTrafdic.lfn = "%s" % (TMPHISTFILE)
fileOTrafdic.destinationDBlock = job.destinationDBlock
fileOTrafdic.destinationSE = job.destinationSE
fileOTrafdic.dataset = job.destinationDBlock
fileOTrafdic.type = 'output'
job.addFile(fileOTrafdic)
if j.task.type == 'test production' or j.task.type == 'mass production' or j.task.type == 'technical production' or j.task.type == 'DDD filtering':
fileOtestevtdump = FileSpec()
fileOtestevtdump.lfn = "testevtdump.raw"
fileOtestevtdump.destinationDBlock = job.destinationDBlock
fileOtestevtdump.destinationSE = job.destinationSE
fileOtestevtdump.dataset = job.destinationDBlock
fileOtestevtdump.type = 'output'
job.addFile(fileOtestevtdump)
s, o = Client.submitJobs([job], srvID=aSrvID)
logger.info(s)
for x in o:
logger.info("PandaID=%s" % x[0])
if x[0] != 0 and x[0] != 'NULL':
j_update = Job.objects.get(id=j.id)
j_update.panda_id = x[0]
j_update.status = 'sent'
j_update.attempt = j_update.attempt + 1
j_update.date_updated = timezone.now()
try:
j_update.save()
logger.info('Job %s with PandaID %s updated at %s' %
(j.id, x[0], timezone.now()))
if j_update.task.status == 'send':
logger.info(
'Going to update status of task %s from send to running'
% j_update.task.name)
t_update = Task.objects.get(id=j_update.task.id)
t_update.status = 'running'
t_update.date_updated = timezone.now()
try:
t_update.save()
logger.info('Task %s updated' % t_update.name)
except IntegrityError as e:
logger.exception(
'Unique together catched, was not saved')
except DatabaseError as e:
logger.exception(
'Something went wrong while saving: %s' %
e.message)
except IntegrityError as e:
logger.exception(
'Unique together catched, was not saved')
except DatabaseError as e:
logger.exception(
'Something went wrong while saving: %s' %
e.message)
else:
logger.info('Job %s was not added to PanDA' % j.id)
i += 1
logger.info('done')
'tail': tail,
'prodSlt': j.task.prodSlt,
'EVTDUMPFILE': EVTDUMPFILE,
'STDOUTFILE': STDOUTFILE,
'STDERRFILE': STDERRFILE
}
# fileIRaw = FileSpec()
# fileIRaw.lfn = "%s" % (input_file)
# fileIRaw.destinationDBlock = job.destinationDBlock
# fileIRaw.destinationSE = job.destinationSE
# fileIRaw.dataset = job.destinationDBlock
# fileIRaw.type = 'input'
# job.addFile(fileIRaw)
fileOstdout = FileSpec()
fileOstdout.lfn = "payload_stdout.txt"
fileOstdout.destinationDBlock = job.destinationDBlock
fileOstdout.destinationSE = job.destinationSE
fileOstdout.dataset = job.destinationDBlock
fileOstdout.type = 'output'
job.addFile(fileOstdout)
fileOstderr = FileSpec()
fileOstderr.lfn = "payload_stderr.txt"
fileOstderr.destinationDBlock = job.destinationDBlock
fileOstderr.destinationSE = job.destinationSE
fileOstderr.dataset = job.destinationDBlock
fileOstderr.type = 'output'
job.addFile(fileOstderr)
def run(self, data):
datasetName = 'panda:panda.destDB.%s' % commands.getoutput('uuidgen')
destName = 'ANALY_RRC-KI-HPC'
site = 'ANALY_RRC-KI-HPC'
scope = config['DEFAULT_SCOPE']
distributive = data['distributive']
release = data['release']
parameters = data['parameters']
input_type = data['input_type']
input_params = data['input_params']
input_files = data['input_files']
output_type = data['output_type']
output_params = data['output_params']
output_files = data['output_files']
jobid = data['jobid']
_logger.debug('Jobid: ' + str(jobid))
job = JobSpec()
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = commands.getoutput('uuidgen')
job.transformation = config['DEFAULT_TRF']
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 1000
job.prodSourceLabel = 'user'
job.computingSite = site
job.cloud = 'RU'
job.prodDBlock = "%s:%s.%s" % (scope, scope, job.jobName)
job.jobParameters = '%s %s "%s"' % (release, distributive, parameters)
params = {}
_logger.debug('MoveData')
ec = 0
ec, uploaded_input_files = movedata(
params=params,
fileList=input_files,
fromType=input_type,
fromParams=input_params,
toType='hpc',
toParams={'dest': '/' + re.sub(':', '/', job.prodDBlock)})
if ec != 0:
_logger.error('Move data error: ' + ec[1])
return
for file in uploaded_input_files:
fileIT = FileSpec()
fileIT.lfn = file
fileIT.dataset = job.prodDBlock
fileIT.prodDBlock = job.prodDBlock
fileIT.type = 'input'
fileIT.scope = scope
fileIT.status = 'ready'
fileIT.GUID = commands.getoutput('uuidgen')
job.addFile(fileIT)
for file in output_files:
fileOT = FileSpec()
fileOT.lfn = file
fileOT.destinationDBlock = job.prodDBlock
fileOT.destinationSE = job.destinationSE
fileOT.dataset = job.prodDBlock
fileOT.type = 'output'
fileOT.scope = scope
fileOT.GUID = commands.getoutput('uuidgen')
job.addFile(fileOT)
fileOL = FileSpec()
fileOL.lfn = "%s.log.tgz" % job.jobName
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
fileOL.scope = 'panda'
job.addFile(fileOL)
self.jobList.append(job)
#submitJob
o = self.submitJobs(self.jobList)
x = o[0]
#update PandaID
conn = MySQLdb.connect(
host=self.dbhost,
db=self.dbname,
# port=self.dbport, connect_timeout=self.dbtimeout,
user=self.dbuser,
passwd=self.dbpasswd)
cur = conn.cursor()
try:
varDict = {}
PandaID = int(x[0])
varDict['id'] = jobid
varDict['pandaId'] = PandaID
sql = "UPDATE %s SET %s.pandaId=%s WHERE %s.id=%s" % (
self.table_jobs, self.table_jobs, varDict['pandaId'],
self.table_jobs, varDict['id'])
cur.execute(sql, varDict)
except:
_logger.error('SENDJOB: Incorrect server response')
try:
conn.commit()
return True
except:
_logger.error("commit error")
return False
def run(self):
for i in range(1):
prodDBlock = 'rome.004201.evgen.ZeeJimmy'
destinationDBlock = 'pandatest.000123.test.simul'
destinationSE = 'BNL_SE'
jobs = []
#for i in range(self.interval):
for i in range(2):
job = JobSpec()
job.jobDefinitionID=self.jobDefinitionID
job.AtlasRelease='Atlas-11.0.1'
job.prodDBlock=prodDBlock
job.destinationDBlock=destinationDBlock
job.destinationSE=destinationSE
job.currentPriority=i
lfnI = 'rome.004201.evgen.ZeeJimmy._00001.pool.root'
file = FileSpec()
file.lfn = lfnI
file.dataset = 'rome.004201.evgen.ZeeJimmy'
file.type = 'input'
file.prodDBlock = prodDBlock
file.dataset = prodDBlock
job.addFile(file)
lfnO ='%s.pool.root.1' % commands.getoutput('uuidgen')
file = FileSpec()
file.lfn = lfnO
file.type = 'output'
file.destinationDBlock = destinationDBlock
file.dataset = destinationDBlock
file.destinationSE = destinationSE
job.addFile(file)
job.homepackage='JobTransforms-11-00-01-01'
job.transformation='share/rome.g4sim.standard.trf'
job.jobParameters='%s %s 1 2 14268' % (lfnI,lfnO)
jobs.append(job)
self.taskbuffer.storeJobs(jobs,None)
time.sleep(self.interval)
def convertToJobFileSpec(self,datasetSpec,setType=None,useEventService=False):
jobFileSpec = JobFileSpec()
jobFileSpec.fileID = self.fileID
jobFileSpec.datasetID = datasetSpec.datasetID
jobFileSpec.jediTaskID = datasetSpec.jediTaskID
jobFileSpec.lfn = self.lfn
jobFileSpec.GUID = self.GUID
if setType == None:
jobFileSpec.type = self.type
else:
jobFileSpec.type = setType
jobFileSpec.scope = self.scope
jobFileSpec.fsize = self.fsize
jobFileSpec.checksum = self.checksum
jobFileSpec.attemptNr = self.attemptNr
# dataset attribute
if datasetSpec != None:
# dataset
if not datasetSpec.containerName in [None,'']:
jobFileSpec.dataset = datasetSpec.containerName
else:
jobFileSpec.dataset = datasetSpec.datasetName
if self.type in datasetSpec.getInputTypes() or setType in datasetSpec.getInputTypes():
# prodDBlock
jobFileSpec.prodDBlock = datasetSpec.datasetName
# storage token
if not datasetSpec.storageToken in ['',None]:
jobFileSpec.dispatchDBlockToken = datasetSpec.storageToken
else:
# destinationDBlock
jobFileSpec.destinationDBlock = datasetSpec.datasetName
# storage token
if not datasetSpec.storageToken in ['',None]:
jobFileSpec.destinationDBlockToken = datasetSpec.storageToken.split('/')[0]
# destination
if not datasetSpec.destination in ['',None]:
jobFileSpec.destinationSE = datasetSpec.destination
# set prodDBlockToken for Event Service
if useEventService and datasetSpec.getObjectStore() != None:
jobFileSpec.prodDBlockToken = 'objectstore^{0}'.format(datasetSpec.getObjectStore())
# allow no output
if datasetSpec.isAllowedNoOutput():
jobFileSpec.allowNoOutput()
# return
return jobFileSpec
def run(self):
try:
_logger.debug('%s Start %s' % (self.pandaID,self.job.jobStatus))
flagComplete = True
ddmJobs = []
topUserDsList = []
usingMerger = False
disableNotifier = False
firstIndvDS = True
finalStatusDS = []
for destinationDBlock in self.destinationDBlocks:
dsList = []
_logger.debug('%s start %s' % (self.pandaID,destinationDBlock))
# ignore tid datasets
if re.search('_tid[\d_]+$',destinationDBlock):
_logger.debug('%s skip %s' % (self.pandaID,destinationDBlock))
continue
# ignore HC datasets
if re.search('^hc_test\.',destinationDBlock) != None or re.search('^user\.gangarbt\.',destinationDBlock) != None:
if re.search('_sub\d+$',destinationDBlock) == None and re.search('\.lib$',destinationDBlock) == None:
_logger.debug('%s skip HC %s' % (self.pandaID,destinationDBlock))
continue
# query dataset
if self.datasetMap.has_key(destinationDBlock):
dataset = self.datasetMap[destinationDBlock]
else:
dataset = self.taskBuffer.queryDatasetWithMap({'name':destinationDBlock})
if dataset == None:
_logger.error('%s Not found : %s' % (self.pandaID,destinationDBlock))
flagComplete = False
continue
# skip tobedeleted/tobeclosed
if dataset.status in ['cleanup','tobeclosed','completed']:
_logger.debug('%s skip %s due to %s' % (self.pandaID,destinationDBlock,dataset.status))
continue
dsList.append(dataset)
# sort
dsList.sort()
# count number of completed files
notFinish = self.taskBuffer.countFilesWithMap({'destinationDBlock':destinationDBlock,
'status':'unknown'})
if notFinish < 0:
_logger.error('%s Invalid DB return : %s' % (self.pandaID,notFinish))
flagComplete = False
continue
# check if completed
_logger.debug('%s notFinish:%s' % (self.pandaID,notFinish))
if self.job.destinationSE == 'local' and self.job.prodSourceLabel in ['user','panda']:
# close non-DQ2 destinationDBlock immediately
finalStatus = 'closed'
elif self.job.lockedby == 'jedi' and self.isTopLevelDS(destinationDBlock):
# set it closed in order not to trigger DDM cleanup. It will be closed by JEDI
finalStatus = 'closed'
elif self.job.prodSourceLabel in ['user'] and "--mergeOutput" in self.job.jobParameters \
and self.job.processingType != 'usermerge':
# merge output files
if firstIndvDS:
# set 'tobemerged' to only the first dataset to avoid triggering many Mergers for --individualOutDS
finalStatus = 'tobemerged'
firstIndvDS = False
else:
finalStatus = 'tobeclosed'
# set merging to top dataset
usingMerger = True
# disable Notifier
disableNotifier = True
elif self.job.produceUnMerge():
finalStatus = 'doing'
else:
# set status to 'tobeclosed' to trigger DQ2 closing
finalStatus = 'tobeclosed'
if notFinish==0:
_logger.debug('%s set %s to dataset : %s' % (self.pandaID,finalStatus,destinationDBlock))
# set status
dataset.status = finalStatus
# update dataset in DB
retT = self.taskBuffer.updateDatasets(dsList,withLock=True,withCriteria="status<>:crStatus AND status<>:lockStatus ",
criteriaMap={':crStatus':finalStatus,':lockStatus':'locked'})
if len(retT) > 0 and retT[0]==1:
finalStatusDS += dsList
# close user datasets
if self.job.prodSourceLabel in ['user'] and self.job.destinationDBlock.endswith('/') \
and (dataset.name.startswith('user') or dataset.name.startswith('group')):
# get top-level user dataset
topUserDsName = re.sub('_sub\d+$','',dataset.name)
# update if it is the first attempt
if topUserDsName != dataset.name and not topUserDsName in topUserDsList and self.job.lockedby != 'jedi':
topUserDs = self.taskBuffer.queryDatasetWithMap({'name':topUserDsName})
if topUserDs != None:
# check status
if topUserDs.status in ['completed','cleanup','tobeclosed',
'tobemerged','merging']:
_logger.debug('%s skip %s due to status=%s' % (self.pandaID,topUserDsName,topUserDs.status))
else:
# set status
if self.job.processingType.startswith('gangarobot') or \
self.job.processingType.startswith('hammercloud'):
# not trigger freezing for HC datasets so that files can be appended
topUserDs.status = 'completed'
elif not usingMerger:
topUserDs.status = finalStatus
else:
topUserDs.status = 'merging'
# append to avoid repetition
topUserDsList.append(topUserDsName)
# update DB
retTopT = self.taskBuffer.updateDatasets([topUserDs],withLock=True,withCriteria="status<>:crStatus",
criteriaMap={':crStatus':topUserDs.status})
if len(retTopT) > 0 and retTopT[0]==1:
_logger.debug('%s set %s to top dataset : %s' % (self.pandaID,topUserDs.status,topUserDsName))
else:
_logger.debug('%s failed to update top dataset : %s' % (self.pandaID,topUserDsName))
# get parent dataset for merge job
if self.job.processingType == 'usermerge':
tmpMatch = re.search('--parentDS ([^ \'\"]+)',self.job.jobParameters)
if tmpMatch == None:
_logger.error('%s failed to extract parentDS' % self.pandaID)
else:
unmergedDsName = tmpMatch.group(1)
# update if it is the first attempt
if not unmergedDsName in topUserDsList:
unmergedDs = self.taskBuffer.queryDatasetWithMap({'name':unmergedDsName})
if unmergedDs == None:
_logger.error('%s failed to get parentDS=%s from DB' % (self.pandaID,unmergedDsName))
else:
# check status
if unmergedDs.status in ['completed','cleanup','tobeclosed']:
_logger.debug('%s skip %s due to status=%s' % (self.pandaID,unmergedDsName,unmergedDs.status))
else:
# set status
unmergedDs.status = finalStatus
# append to avoid repetition
topUserDsList.append(unmergedDsName)
# update DB
retTopT = self.taskBuffer.updateDatasets([unmergedDs],withLock=True,withCriteria="status<>:crStatus",
criteriaMap={':crStatus':unmergedDs.status})
if len(retTopT) > 0 and retTopT[0]==1:
_logger.debug('%s set %s to parent dataset : %s' % (self.pandaID,unmergedDs.status,unmergedDsName))
else:
_logger.debug('%s failed to update parent dataset : %s' % (self.pandaID,unmergedDsName))
if self.pandaDDM and self.job.prodSourceLabel=='managed':
# instantiate SiteMapper
if self.siteMapper == None:
self.siteMapper = SiteMapper(self.taskBuffer)
# get file list for PandaDDM
retList = self.taskBuffer.queryFilesWithMap({'destinationDBlock':destinationDBlock})
lfnsStr = ''
guidStr = ''
for tmpFile in retList:
if tmpFile.type in ['log','output']:
lfnsStr += '%s,' % tmpFile.lfn
guidStr += '%s,' % tmpFile.GUID
if lfnsStr != '':
guidStr = guidStr[:-1]
lfnsStr = lfnsStr[:-1]
# create a DDM job
ddmjob = JobSpec()
ddmjob.jobDefinitionID = int(time.time()) % 10000
ddmjob.jobName = "%s" % commands.getoutput('uuidgen')
ddmjob.transformation = 'http://pandaserver.cern.ch:25080/trf/mover/run_dq2_cr'
ddmjob.destinationDBlock = 'testpanda.%s' % ddmjob.jobName
ddmjob.computingSite = "BNL_ATLAS_DDM"
ddmjob.destinationSE = ddmjob.computingSite
ddmjob.currentPriority = 200000
ddmjob.prodSourceLabel = 'ddm'
ddmjob.transferType = 'sub'
# append log file
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % ddmjob.jobName
fileOL.destinationDBlock = ddmjob.destinationDBlock
fileOL.destinationSE = ddmjob.destinationSE
fileOL.dataset = ddmjob.destinationDBlock
fileOL.type = 'log'
ddmjob.addFile(fileOL)
# make arguments
dstDQ2ID = 'BNLPANDA'
srcDQ2ID = self.siteMapper.getSite(self.job.computingSite).ddm
callBackURL = 'https://%s:%s/server/panda/datasetCompleted?vuid=%s&site=%s' % \
(panda_config.pserverhost,panda_config.pserverport,
dataset.vuid,dstDQ2ID)
_logger.debug(callBackURL)
# set src/dest
ddmjob.sourceSite = srcDQ2ID
ddmjob.destinationSite = dstDQ2ID
# if src==dst, send callback without ddm job
if dstDQ2ID == srcDQ2ID:
comout = commands.getoutput('curl -k %s' % callBackURL)
_logger.debug(comout)
else:
# run dq2_cr
callBackURL = urllib.quote(callBackURL)
# get destination dir
destDir = brokerage.broker_util._getDefaultStorage(self.siteMapper.getSite(self.job.computingSite).dq2url)
argStr = "-s %s -r %s --guids %s --lfns %s --callBack %s -d %s/%s %s" % \
(srcDQ2ID,dstDQ2ID,guidStr,lfnsStr,callBackURL,destDir,
destinationDBlock,destinationDBlock)
# set job parameters
ddmjob.jobParameters = argStr
_logger.debug('%s pdq2_cr %s' % (self.pandaID,ddmjob.jobParameters))
ddmJobs.append(ddmjob)
# start Activator
if re.search('_sub\d+$',dataset.name) == None:
if self.job.prodSourceLabel=='panda' and self.job.processingType in ['merge','unmerge']:
# don't trigger Activator for merge jobs
pass
else:
if self.job.jobStatus == 'finished':
aThr = Activator(self.taskBuffer,dataset)
aThr.start()
aThr.join()
else:
# unset flag since another thread already updated
#flagComplete = False
pass
else:
# update dataset in DB
self.taskBuffer.updateDatasets(dsList,withLock=True,withCriteria="status<>:crStatus AND status<>:lockStatus ",
criteriaMap={':crStatus':finalStatus,':lockStatus':'locked'})
# unset flag
flagComplete = False
# end
_logger.debug('%s end %s' % (self.pandaID,destinationDBlock))
# start DDM jobs
if ddmJobs != []:
self.taskBuffer.storeJobs(ddmJobs,self.job.prodUserID,joinThr=True)
# change pending jobs to failed
finalizedFlag = True
if flagComplete and self.job.prodSourceLabel=='user':
_logger.debug('%s finalize %s %s' % (self.pandaID,self.job.prodUserName,self.job.jobDefinitionID))
finalizedFlag = self.taskBuffer.finalizePendingJobs(self.job.prodUserName,self.job.jobDefinitionID,waitLock=True)
_logger.debug('%s finalized with %s' % (self.pandaID,finalizedFlag))
# update unmerged datasets in JEDI to trigger merging
if flagComplete and self.job.produceUnMerge() and finalStatusDS != []:
if finalizedFlag:
self.taskBuffer.updateUnmergedDatasets(self.job,finalStatusDS)
# start notifier
_logger.debug('%s source:%s complete:%s' % (self.pandaID,self.job.prodSourceLabel,flagComplete))
if (self.job.jobStatus != 'transferring') and ((flagComplete and self.job.prodSourceLabel=='user') or \
(self.job.jobStatus=='failed' and self.job.prodSourceLabel=='panda')) and \
self.job.lockedby != 'jedi':
# don't send email for merge jobs
if (not disableNotifier) and not self.job.processingType in ['merge','unmerge']:
useNotifier = True
summaryInfo = {}
# check all jobDefIDs in jobsetID
if not self.job.jobsetID in [0,None,'NULL']:
useNotifier,summaryInfo = self.taskBuffer.checkDatasetStatusForNotifier(self.job.jobsetID,self.job.jobDefinitionID,
self.job.prodUserName)
_logger.debug('%s useNotifier:%s' % (self.pandaID,useNotifier))
if useNotifier:
_logger.debug('%s start Notifier' % self.pandaID)
nThr = Notifier.Notifier(self.taskBuffer,self.job,self.destinationDBlocks,summaryInfo)
nThr.run()
_logger.debug('%s end Notifier' % self.pandaID)
_logger.debug('%s End' % self.pandaID)
except:
errType,errValue = sys.exc_info()[:2]
_logger.error("%s %s" % (errType,errValue))
def prepare(self,app,appconfig,appmasterconfig,jobmasterconfig):
'''prepare the subjob specific configuration'''
# PandaTools
from pandatools import Client
from pandatools import AthenaUtils
from taskbuffer.JobSpec import JobSpec
from taskbuffer.FileSpec import FileSpec
job = app._getParent()
logger.debug('AthenaMCPandaRTHandler prepare called for %s', job.getFQID('.'))
try:
assert self.outsite
except:
logger.error("outsite not set. Aborting")
raise Exception()
job.backend.site = self.outsite
job.backend.actualCE = self.outsite
cloud = job._getRoot().backend.requirements.cloud
job.backend.requirements.cloud = cloud
# now just filling the job from AthenaMC data
jspec = JobSpec()
jspec.jobDefinitionID = job._getRoot().id
jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
jspec.AtlasRelease = 'Atlas-%s' % app.atlas_rel
if app.transform_archive:
jspec.homepackage = 'AnalysisTransforms'+app.transform_archive
elif app.prod_release:
jspec.homepackage = 'AnalysisTransforms-AtlasProduction_'+str(app.prod_release)
jspec.transformation = '%s/runAthena-00-00-11' % Client.baseURLSUB
#---->???? prodDBlock and destinationDBlock when facing several input / output datasets?
jspec.prodDBlock = 'NULL'
if job.inputdata and len(app.inputfiles)>0 and app.inputfiles[0] in app.dsetmap:
jspec.prodDBlock = app.dsetmap[app.inputfiles[0]]
# How to specify jspec.destinationDBlock when more than one type of output is available? Panda prod jobs seem to specify only the last output dataset
outdset=""
for type in ["EVNT","RDO","HITS","AOD","ESD","NTUP"]:
if type in app.outputpaths.keys():
outdset=string.replace(app.outputpaths[type],"/",".")
outdset=outdset[1:-1]
break
if not outdset:
try:
assert len(app.outputpaths.keys())>0
except:
logger.error("app.outputpaths is empty: check your output datasets")
raise
type=app.outputpaths.keys()[0]
outdset=string.replace(app.outputpaths[type],"/",".")
outdset=outdset[1:-1]
jspec.destinationDBlock = outdset
jspec.destinationSE = self.outsite
jspec.prodSourceLabel = 'user'
jspec.assignedPriority = 1000
jspec.cloud = cloud
# memory
if job.backend.requirements.memory != -1:
jspec.minRamCount = job.backend.requirements.memory
jspec.computingSite = self.outsite
jspec.cmtConfig = AthenaUtils.getCmtConfig(athenaVer=app.atlas_rel)
# library (source files)
flib = FileSpec()
flib.lfn = self.library
# flib.GUID =
flib.type = 'input'
# flib.status =
flib.dataset = self.libDataset
flib.dispatchDBlock = self.libDataset
jspec.addFile(flib)
# input files FIXME: many more input types
for lfn in app.inputfiles:
useguid=app.turls[lfn].replace("guid:","")
finp = FileSpec()
finp.lfn = lfn
finp.GUID = useguid
finp.dataset = app.dsetmap[lfn]
finp.prodDBlock = app.dsetmap[lfn]
finp.prodDBlockToken = 'local'
finp.dispatchDBlock = app.dsetmap[lfn]
finp.type = 'input'
finp.status = 'ready'
jspec.addFile(finp)
# add dbfiles if any:
for lfn in app.dbfiles:
useguid=app.dbturls[lfn].replace("guid:","")
finp = FileSpec()
finp.lfn = lfn
finp.GUID = useguid
finp.dataset = app.dsetmap[lfn]
finp.prodDBlock = app.dsetmap[lfn]
finp.prodDBlockToken = 'local'
finp.dispatchDBlock = app.dsetmap[lfn]
finp.type = 'input'
finp.status = 'ready'
jspec.addFile(finp)
# then minbias files
for lfn in app.mbfiles:
useguid=app.minbias_turls[lfn].replace("guid:","")
finp = FileSpec()
finp.lfn = lfn
finp.GUID = useguid
finp.dataset = app.dsetmap[lfn]
finp.prodDBlock = app.dsetmap[lfn]
finp.prodDBlockToken = 'local'
finp.dispatchDBlock = app.dsetmap[lfn]
finp.type = 'input'
finp.status = 'ready'
jspec.addFile(finp)
# then cavern files
for lfn in app.cavernfiles:
useguid=app.cavern_turls[lfn].replace("guid:","")
finp = FileSpec()
finp.lfn = lfn
finp.GUID = useguid
finp.dataset = app.dsetmap[lfn]
finp.prodDBlock = app.dsetmap[lfn]
finp.prodDBlockToken = 'local'
finp.dispatchDBlock = app.dsetmap[lfn]
finp.type = 'input'
finp.status = 'ready'
jspec.addFile(finp)
# output files( this includes the logfiles)
# Output files
jidtag=""
job = app._getParent() # Returns job or subjob object
if job._getRoot().subjobs:
jidtag = job._getRoot().id
else:
jidtag = "%d" % job.id
outfiles=app.subjobsOutfiles[job.id]
pandaOutfiles={}
for type in outfiles.keys():
pandaOutfiles[type]=outfiles[type]+"."+str(jidtag)
if type=="LOG":
pandaOutfiles[type]+=".tgz"
#print pandaOutfiles
for outtype in pandaOutfiles.keys():
fout = FileSpec()
dset=string.replace(app.outputpaths[outtype],"/",".")
dset=dset[1:-1]
fout.dataset=dset
fout.lfn=pandaOutfiles[outtype]
fout.type = 'output'
# fout.destinationDBlock = jspec.destinationDBlock
fout.destinationDBlock = fout.dataset
fout.destinationSE = jspec.destinationSE
if outtype=='LOG':
fout.type='log'
fout.destinationDBlock = fout.dataset
fout.destinationSE = job.backend.site
jspec.addFile(fout)
# job parameters
param = '-l %s ' % self.library # user tarball.
# use corruption checker
if job.backend.requirements.corCheck:
param += '--corCheck '
# disable to skip missing files
if job.backend.requirements.notSkipMissing:
param += '--notSkipMissing '
# transform parameters
# need to update arglist with final output file name...
newArgs=[]
if app.mode == "evgen":
app.args[3]=app.args[3]+" -t "
if app.verbosity:
app.args[3]=app.args[3]+" -l %s " % app.verbosity
for arg in app.args[3:]:
for type in outfiles.keys():
if arg.find(outfiles[type])>-1:
arg=arg.replace(outfiles[type],pandaOutfiles[type])
newArgs.append(arg)
arglist=string.join(newArgs," ")
# print "Arglist:",arglist
param += ' -r ./ '
param += ' -j "%s"' % urllib.quote(arglist)
allinfiles=app.inputfiles+app.dbfiles
# Input files.
param += ' -i "%s" ' % allinfiles
if len(app.mbfiles)>0:
param+= ' -m "%s" ' % app.mbfiles
if len(app.cavernfiles)>0:
param+= ' -n "%s" ' % app.cavernfiles
# param += '-m "[]" ' #%minList FIXME
# param += '-n "[]" ' #%cavList FIXME
del pandaOutfiles["LOG"] # logfiles do not appear in IROOT block, and this one is not needed anymore...
param += ' -o "{\'IROOT\':%s }"' % str(pandaOutfiles.items())
# source URL
matchURL = re.search("(http.*://[^/]+)/",Client.baseURLSSL)
if matchURL != None:
param += " --sourceURL %s " % matchURL.group(1)
param += " --trf"
jspec.jobParameters = param
jspec.metadata="--trf \"%s\"" % arglist
#print "SUBJOB DETAILS:",jspec.values()
if app.dryrun:
print "job.application.dryrun activated, printing out job parameters"
print jspec.values()
return
return jspec
tableSuffix = ''
if id < cumulativePandaID:
# use the cumulative
tableSuffix = cumulativeSuffix
else:
for key in suffixKeys:
if id < key:
tableSuffix = suffixMap[key]
break
# check suffix
if tableSuffix in ['',currentSuffix,previousSuffix]:
print "Terminated since fresh PandID=%s found for '%s'" % (id,tableSuffix)
sys.exit(0)
print "PandaID:%s Suffix:%s" % (id,tableSuffix)
# get FileSpec
sqlFile = "SELECT %s FROM filesTable4 " % FileSpec.columnNames()
sqlFile+= "WHERE PandaID=%s" % id
statusF,resFs = proxyS.querySQLS(sqlFile)
for resF in resFs:
file = FileSpec()
file.pack(resF)
# create a dummy Job to set PandaID
job = JobSpec()
job.PandaID = id
job.addFile(file)
# file table
fileTable = 'filesTable%s' % tableSuffix
# check
sqlFileCheck = "SELECT PandaID FROM %s WHERE rowID=%s" % (fileTable,file.rowID)
statusC,resC = proxyN.querySQLS(sqlFileCheck)
if len(resC) != 0:
def prepare(self,app,appsubconfig,appmasterconfig,jobmasterconfig):
'''prepare the subjob specific configuration'''
from pandatools import Client
from taskbuffer.JobSpec import JobSpec
from taskbuffer.FileSpec import FileSpec
job = app._getParent()
logger.debug('AthenaPandaRTHandler prepare called for %s', job.getFQID('.'))
# in case of a simple job get the dataset content, otherwise subjobs are filled by the splitter
if job.inputdata and not job._getRoot().subjobs:
if not job.inputdata.names:
contents = job.inputdata.get_contents(overlap=False, size=True)
for ds in contents.keys():
for f in contents[ds]:
job.inputdata.guids.append( f[0] )
job.inputdata.names.append( f[1][0] )
job.inputdata.sizes.append( f[1][1] )
job.inputdata.checksums.append( f[1][2] )
job.inputdata.scopes.append( f[1][3] )
site = job._getRoot().backend.site
job.backend.site = site
job.backend.actualCE = site
cloud = job._getRoot().backend.requirements.cloud
job.backend.requirements.cloud = cloud
# if no outputdata are given
if not job.outputdata:
job.outputdata = DQ2OutputDataset()
job.outputdata.datasetname = job._getRoot().outputdata.datasetname
#if not job.outputdata.datasetname:
else:
job.outputdata.datasetname = job._getRoot().outputdata.datasetname
if not job.outputdata.datasetname:
raise ApplicationConfigurationError('DQ2OutputDataset has no datasetname')
jspec = JobSpec()
jspec.jobDefinitionID = job._getRoot().id
jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
jspec.transformation = '%s/runGen-00-00-02' % Client.baseURLSUB
if job.inputdata:
jspec.prodDBlock = job.inputdata.dataset[0]
else:
jspec.prodDBlock = 'NULL'
jspec.destinationDBlock = job.outputdata.datasetname
if job.outputdata.location:
if not job._getRoot().subjobs or job.id == 0:
logger.warning('You have specified outputdata.location. Note that Panda may not support writing to a user-defined output location.')
jspec.destinationSE = job.outputdata.location
else:
jspec.destinationSE = site
jspec.prodSourceLabel = configPanda['prodSourceLabelRun']
jspec.processingType = configPanda['processingType']
jspec.assignedPriority = configPanda['assignedPriorityRun']
jspec.cloud = cloud
# memory
if job.backend.requirements.memory != -1:
jspec.minRamCount = job.backend.requirements.memory
# cputime
if job.backend.requirements.cputime != -1:
jspec.maxCpuCount = job.backend.requirements.cputime
jspec.computingSite = site
# library (source files)
if job.backend.libds:
flib = FileSpec()
flib.lfn = self.fileBO.lfn
flib.GUID = self.fileBO.GUID
flib.type = 'input'
flib.status = self.fileBO.status
flib.dataset = self.fileBO.destinationDBlock
flib.dispatchDBlock = self.fileBO.destinationDBlock
jspec.addFile(flib)
elif job.backend.bexec:
flib = FileSpec()
flib.lfn = self.library
flib.type = 'input'
flib.dataset = self.libDataset
flib.dispatchDBlock = self.libDataset
jspec.addFile(flib)
# input files FIXME: many more input types
if job.inputdata:
for guid, lfn, size, checksum, scope in zip(job.inputdata.guids,job.inputdata.names,job.inputdata.sizes, job.inputdata.checksums, job.inputdata.scopes):
finp = FileSpec()
finp.lfn = lfn
finp.GUID = guid
finp.scope = scope
# finp.fsize =
# finp.md5sum =
finp.dataset = job.inputdata.dataset[0]
finp.prodDBlock = job.inputdata.dataset[0]
finp.dispatchDBlock = job.inputdata.dataset[0]
finp.type = 'input'
finp.status = 'ready'
jspec.addFile(finp)
# output files
# outMap = {}
#FIXME: if options.outMeta != []:
self.rundirectory = "."
# log files
flog = FileSpec()
flog.lfn = '%s._$PANDAID.log.tgz' % job.outputdata.datasetname
flog.type = 'log'
flog.dataset = job.outputdata.datasetname
flog.destinationDBlock = job.outputdata.datasetname
flog.destinationSE = job.backend.site
jspec.addFile(flog)
# job parameters
param = ''
# source URL
matchURL = re.search("(http.*://[^/]+)/",Client.baseURLCSRVSSL)
srcURL = ""
if matchURL != None:
srcURL = matchURL.group(1)
param += " --sourceURL %s " % srcURL
param += '-r "%s" ' % self.rundirectory
exe_name = job.application.exe
if job.backend.bexec == '':
if hasattr(job.application.exe, "name"):
exe_name = os.path.basename(job.application.exe.name)
# set jobO parameter
if job.application.args:
param += ' -j "" -p "%s %s" '%(exe_name,urllib.quote(" ".join(job.application.args)))
else:
param += ' -j "" -p "%s" '%exe_name
if self.inputsandbox:
param += ' -a %s '%self.inputsandbox
else:
param += '-l %s ' % self.library
param += '-j "" -p "%s %s" ' % ( exe_name,urllib.quote(" ".join(job.application.args)))
if job.inputdata:
param += '-i "%s" ' % job.inputdata.names
# fill outfiles
outfiles = {}
for f in self.extOutFile:
tarnum = 1
if f.find('*') != -1:
# archive *
outfiles[f] = "outputbox%i.%s.%s.tar.gz" % (tarnum, job.getFQID('.'), time.strftime("%Y%m%d%H%M%S") )
tarnum += 1
else:
outfiles[f] = "%s.%s.%s" %(f, job.getFQID('.'), time.strftime("%Y%m%d%H%M%S"))
fout = FileSpec()
fout.lfn = outfiles[f]
fout.type = 'output'
fout.dataset = job.outputdata.datasetname
fout.destinationDBlock = job.outputdata.datasetname
fout.destinationSE = job.backend.site
jspec.addFile(fout)
param += '-o "%s" ' % (outfiles) # must be double quotes, because python prints strings in 'single quotes'
for file in jspec.Files:
if file.type in [ 'output', 'log'] and configPanda['chirpconfig']:
file.dispatchDBlockToken = configPanda['chirpconfig']
logger.debug('chirp file %s',file)
jspec.jobParameters = param
return jspec
destName = 'ANALY_BNL_ATLAS_1'
job = JobSpec()
job.jobDefinitionID = 1
job.jobName = commands.getoutput('uuidgen')
job.AtlasRelease = 'Atlas-12.0.2'
job.homepackage = 'AnalysisTransforms'
job.transformation = 'https://gridui01.usatlas.bnl.gov:24443/dav/test/runAthena2'
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 3000
job.prodSourceLabel = 'user'
job.computingSite = site
job.prodDBlock = 'testIdeal_06.005001.pythia_minbias.recon.AOD.v12000103'
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % commands.getoutput('uuidgen')
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
job.addFile(fileOL)
fileOZ = FileSpec()
fileOZ.lfn = "AANT.%s.root" % commands.getoutput('uuidgen')
fileOZ.destinationDBlock = job.destinationDBlock
fileOZ.destinationSE = job.destinationSE
fileOZ.dataset = job.destinationDBlock
fileOZ.type = 'output'
job.addFile(fileOZ)
for i in range(1):
for lfn in files.keys():
job = JobSpec()
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = commands.getoutput('uuidgen')
job.AtlasRelease = 'Atlas-13.0.35'
job.homepackage = 'AtlasPoint1/13.0.35.1'
job.transformation = 'csc_cosmics_trf.py'
job.destinationDBlock = datasetName
job.cloud = cloud
job.computingSite = site
job.prodDBlock = files[lfn]
job.prodSourceLabel = 'test'
job.currentPriority = 1001
fileI = FileSpec()
fileI.dataset = job.prodDBlock
fileI.prodDBlock = job.prodDBlock
fileI.lfn = lfn
fileI.type = 'input'
job.addFile(fileI)
fileD = FileSpec()
fileD.dataset = 'ddo.000001.Atlas.Ideal.DBRelease.v030101'
fileD.prodDBlock = 'ddo.000001.Atlas.Ideal.DBRelease.v030101'
fileD.lfn = 'DBRelease-3.1.1.tar.gz'
fileD.type = 'input'
# job.addFile(fileD)
fileO1 = FileSpec()
def main():
logger.info('Getting tasks with status send and running')
# tasks_list = Task.objects.all().filter(Q(status='send') | Q(status='running'))
tasks_list = Task.objects.all().filter(name='TestTaskBW')
logger.info('Got list of %s tasks' % len(tasks_list))
for t in tasks_list:
logger.info('Getting jobs in status defined or failed for task %s' % t)
jobs_list_count = Job.objects.all().filter(task=t).count()
if jobs_list_count > 50:
jobs_list = Job.objects.all().filter(
task=t).order_by('id')[:max_send_amount]
else:
jobs_list = Job.objects.all().filter(
task=t).order_by('id')[:jobs_list_count]
logger.info('Got list of %s jobs' % len(jobs_list))
i = 0
for j in jobs_list:
if i >= max_send_amount:
break
logger.info('Going to send job %s of %s task' %
(j.file, j.task.name))
umark = commands.getoutput('uuidgen')
datasetName = 'panda.destDB.%s' % umark
destName = 'local' # PanDA will not try to move output data, data will be placed by pilot (based on schedconfig)
job = JobSpec()
job.taskID = j.task.id
job.jobDefinitionID = 0
job.jobName = 'hello world'
job.transformation = j.task.type # payload (can be URL as well)
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 2000
job.prodSourceLabel = 'test'
job.computingSite = site
job.attemptNr = 1
job.maxAttempt = 5
job.sourceSite = 'BW_COMPASS_MCORE'
job.VO = 'local'
# logs, and all files generated during execution will be placed in log (except output file)
job.jobParameters = 'python /u/sciteam/petrosya/panda/hello.py'
fileOLog = FileSpec()
fileOLog.lfn = "log.job.log.tgz"
fileOLog.destinationDBlock = job.destinationDBlock
fileOLog.destinationSE = job.destinationSE
fileOLog.dataset = job.destinationDBlock
fileOLog.type = 'log'
job.addFile(fileOLog)
s, o = Client.submitJobs([job], srvID=aSrvID)
logger.info(s)
logger.info(o)
# for x in o:
# logger.info("PandaID=%s" % x[0])
# today = datetime.datetime.today()
#
# if x[0] != 0 and x[0] != 'NULL':
# j_update = Job.objects.get(id=j.id)
# j_update.panda_id = x[0]
# j_update.status = 'sent'
# j_update.attempt = j_update.attempt + 1
# j_update.date_updated = today
#
# try:
# j_update.save()
# logger.info('Job %s with PandaID %s updated at %s' % (j.id, x[0], today))
# except IntegrityError as e:
# logger.exception('Unique together catched, was not saved')
# except DatabaseError as e:
# logger.exception('Something went wrong while saving: %s' % e.message)
# else:
# logger.info('Job %s was not added to PanDA' % j.id)
i += 1
logger.info('done')
def convertToJobFileSpec(self,datasetSpec,setType=None,useEventService=False):
jobFileSpec = JobFileSpec()
jobFileSpec.fileID = self.fileID
jobFileSpec.datasetID = datasetSpec.datasetID
jobFileSpec.jediTaskID = datasetSpec.jediTaskID
jobFileSpec.lfn = self.lfn
jobFileSpec.GUID = self.GUID
if setType == None:
jobFileSpec.type = self.type
else:
jobFileSpec.type = setType
jobFileSpec.scope = self.scope
jobFileSpec.fsize = self.fsize
jobFileSpec.checksum = self.checksum
jobFileSpec.attemptNr = self.attemptNr
# dataset attribute
if datasetSpec != None:
# dataset
if not datasetSpec.containerName in [None,'']:
jobFileSpec.dataset = datasetSpec.containerName
else:
jobFileSpec.dataset = datasetSpec.datasetName
if self.type in datasetSpec.getInputTypes() or setType in datasetSpec.getInputTypes():
# prodDBlock
jobFileSpec.prodDBlock = datasetSpec.datasetName
# storage token
if not datasetSpec.storageToken in ['',None]:
jobFileSpec.dispatchDBlockToken = datasetSpec.storageToken
else:
# destinationDBlock
jobFileSpec.destinationDBlock = datasetSpec.datasetName
# storage token
if not datasetSpec.storageToken in ['',None]:
jobFileSpec.destinationDBlockToken = datasetSpec.storageToken.split('/')[0]
# destination
if not datasetSpec.destination in ['',None]:
jobFileSpec.destinationSE = datasetSpec.destination
# set prodDBlockToken for Event Service
if useEventService and datasetSpec.getObjectStore() != None:
jobFileSpec.prodDBlockToken = 'objectstore^{0}'.format(datasetSpec.getObjectStore())
# allow no output
if datasetSpec.isAllowedNoOutput():
jobFileSpec.allowNoOutput()
# return
return jobFileSpec
if arg in ['outputTypes']:
continue
prefix = var.split('.')[0]
sumatch = re.search('(\.[^\.]+\.[^\.]+)(\.\d+)*$',var)
suffix = sumatch.group(1)
newName = '%s.%s%s' % (job.jobName,prefix,suffix)
outMap[arg] = (var,newName)
# DBRelease
elif arg == 'DBRelease':
dbrMap = (arg,var)
# input
elif arg.startswith('input') and arg.endswith('File'):
inputMap = (arg,var)
fileI = FileSpec()
fileI.dataset = job.prodDBlock
fileI.prodDBlock = job.prodDBlock
fileI.lfn = lfn
fileI.type = 'input'
job.addFile(fileI)
fileD = FileSpec()
fileD.dataset = 'ddo.000001.Atlas.Ideal.DBRelease.v06020105'
fileD.prodDBlock = fileD.dataset
fileD.lfn = 'DBRelease-6.2.1.5.tar.gz'
fileD.type = 'input'
job.addFile(fileD)
newParams = origParams
newParams = newParams.replace(dbrMap[0]+'='+dbrMap[1],dbrMap[0]+'='+fileD.lfn)
import getpass
passwd = getpass.getpass()
pool = DBProxyPool('adbpro.usatlas.bnl.gov',passwd,2)
proxy = pool.getProxy()
import sys
import commands
job1 = JobSpec()
job1.PandaID='NULL'
job1.jobStatus='unknown'
job1.computingSite="aaa"
f11 = FileSpec()
f11.lfn = 'in1.pool.root'
f11.type = 'input'
job1.addFile(f11)
f12 = FileSpec()
f12.lfn = 'out1.pool.root'
f12.type = 'output'
job1.addFile(f12)
job2 = JobSpec()
job2.PandaID='NULL'
job2.jobStatus='unknown'
job2.computingSite="bbb"
f21 = FileSpec()
f21.lfn = 'in2.pool.root'
f21.type = 'input'
job.jobName = "%s_%d" % (commands.getoutput('uuidgen'), index)
job.AtlasRelease = 'Atlas-14.1.0\nAtlas-14.1.0'
job.homepackage = 'AtlasProduction/14.1.0.3\nAtlasProduction/14.1.0.3'
job.transformation = 'csc_digi_trf.py\ncsc_reco_trf.py'
job.destinationDBlock = datasetName
job.computingSite = site
job.prodDBlock = 'valid1.005200.T1_McAtNlo_Jimmy.simul.HITS.e322_s429_tid022081'
job.prodSourceLabel = 'test'
job.currentPriority = 10000
job.cloud = 'US'
for lfn in ['HITS.022081._00001.pool.root', 'HITS.022081._00002.pool.root']:
fileI = FileSpec()
fileI.dataset = job.prodDBlock
fileI.prodDBlock = job.prodDBlock
fileI.lfn = lfn
fileI.type = 'input'
job.addFile(fileI)
fileD1 = FileSpec()
fileD1.dataset = 'ddo.000001.Atlas.Ideal.DBRelease.v050001'
fileD1.prodDBlock = fileD1.dataset
fileD1.lfn = 'DBRelease-5.0.1.tar.gz'
fileD1.type = 'input'
job.addFile(fileD1)
fileD2 = FileSpec()
fileD2.dataset = 'ddo.000001.Atlas.Ideal.DBRelease.v050101'
def send_job(jobid, siteid):
_logger.debug('Jobid: ' + str(jobid))
site = sites_.get(siteid)
job = jobs_.get(int(jobid))
cont = job.container
files_catalog = cont.files
fscope = getScope(job.owner.username)
datasetName = '{}:{}'.format(fscope, cont.guid)
distributive = job.distr.name
release = job.distr.release
# Prepare runScript
parameters = job.distr.command
parameters = parameters.replace("$COMMAND$", job.params)
parameters = parameters.replace("$USERNAME$", job.owner.username)
parameters = parameters.replace("$WORKINGGROUP$", job.owner.working_group)
# Prepare metadata
metadata = dict(user=job.owner.username)
# Prepare PanDA Object
pandajob = JobSpec()
pandajob.jobDefinitionID = int(time.time()) % 10000
pandajob.jobName = cont.guid
pandajob.transformation = client_config.DEFAULT_TRF
pandajob.destinationDBlock = datasetName
pandajob.destinationSE = site.se
pandajob.currentPriority = 1000
pandajob.prodSourceLabel = 'user'
pandajob.computingSite = site.ce
pandajob.cloud = 'RU'
pandajob.VO = 'atlas'
pandajob.prodDBlock = "%s:%s" % (fscope, pandajob.jobName)
pandajob.coreCount = job.corecount
pandajob.metadata = json.dumps(metadata)
#pandajob.workingGroup = job.owner.working_group
if site.encode_commands:
# It requires script wrapper on cluster side
pandajob.jobParameters = '%s %s %s "%s"' % (cont.guid, release,
distributive, parameters)
else:
pandajob.jobParameters = parameters
has_input = False
for fcc in files_catalog:
if fcc.type == 'input':
f = fcc.file
guid = f.guid
fileIT = FileSpec()
fileIT.lfn = f.lfn
fileIT.dataset = pandajob.prodDBlock
fileIT.prodDBlock = pandajob.prodDBlock
fileIT.type = 'input'
fileIT.scope = fscope
fileIT.status = 'ready'
fileIT.GUID = guid
pandajob.addFile(fileIT)
has_input = True
if fcc.type == 'output':
f = fcc.file
fileOT = FileSpec()
fileOT.lfn = f.lfn
fileOT.destinationDBlock = pandajob.prodDBlock
fileOT.destinationSE = pandajob.destinationSE
fileOT.dataset = pandajob.prodDBlock
fileOT.type = 'output'
fileOT.scope = fscope
fileOT.GUID = f.guid
pandajob.addFile(fileOT)
# Save replica meta
fc.new_replica(f, site)
if not has_input:
# Add fake input
fileIT = FileSpec()
fileIT.lfn = "fake.input"
fileIT.dataset = pandajob.prodDBlock
fileIT.prodDBlock = pandajob.prodDBlock
fileIT.type = 'input'
fileIT.scope = fscope
fileIT.status = 'ready'
fileIT.GUID = "fake.guid"
pandajob.addFile(fileIT)
# Prepare lof file
fileOL = FileSpec()
fileOL.lfn = "%s.log.tgz" % pandajob.jobName
fileOL.destinationDBlock = pandajob.destinationDBlock
fileOL.destinationSE = pandajob.destinationSE
fileOL.dataset = '{}:logs'.format(fscope)
fileOL.type = 'log'
fileOL.scope = 'panda'
pandajob.addFile(fileOL)
# Save log meta
log = File()
log.scope = fscope
log.lfn = fileOL.lfn
log.guid = getGUID(log.scope, log.lfn)
log.type = 'log'
log.status = 'defined'
files_.save(log)
# Save replica meta
fc.new_replica(log, site)
# Register file in container
fc.reg_file_in_cont(log, cont, 'log')
# Submit job
o = submitJobs([pandajob])
x = o[0]
try:
#update PandaID
PandaID = int(x[0])
job.pandaid = PandaID
job.ce = site.ce
except:
job.status = 'submit_error'
jobs_.save(job)
return 0
def main():
logger.info('Getting tasks with status send and running')
# tasks_list = Task.objects.all().filter(Q(status='send') | Q(status='running'))
tasks_list = Task.objects.all().filter(name='dvcs2016P09t2r13v1_mu+')
logger.info('Got list of %s tasks' % len(tasks_list))
for t in tasks_list:
logger.info('Getting jobs in status defined or failed for task %s' % t)
jobs_list_count = Job.objects.all().filter(task=t).count()
if jobs_list_count > 50:
jobs_list = Job.objects.all().filter(
task=t).order_by('id')[:max_send_amount]
else:
jobs_list = Job.objects.all().filter(
task=t).order_by('id')[:jobs_list_count]
logger.info('Got list of %s jobs' % len(jobs_list))
i = 0
for j in jobs_list:
if i >= max_send_amount:
break
logger.info('Going to send job %s of %s task' %
(j.file, j.task.name))
umark = commands.getoutput('uuidgen')
datasetName = 'panda.destDB.%s' % umark
destName = 'COMPASSPRODDISK' # PanDA will not try to move output data, data will be placed by pilot (based on schedconfig)
TMPRAWFILE = j.file[j.file.rfind('/') + 1:]
logger.info(TMPRAWFILE)
TMPMDSTFILE = 'mDST-%(runNumber)s-%(runChunk)s-%(prodSlt)s-%(phastVer)s.root' % {
'input_file': j.file,
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt,
'phastVer': j.task.phastver
}
logger.info(TMPMDSTFILE)
TMPHISTFILE = '%(runNumber)s-%(runChunk)s-%(prodSlt)s.root' % {
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt
}
logger.info(TMPHISTFILE)
TMPRICHFILE = 'gfile_%(runNumber)s-%(runChunk)s.gfile' % {
'runNumber': j.run_number,
'runChunk': j.chunk_number
}
logger.info(TMPRICHFILE)
EVTDUMPFILE = 'evtdump%(prodSlt)s-%(runChunk)s-%(runNumber)s.raw' % {
'prodSlt': j.task.prodslt,
'runNumber': j.run_number,
'runChunk': j.chunk_number
}
logger.info(EVTDUMPFILE)
STDOUTFILE = '%(prodNameOnly)s.%(runNumber)s-%(runChunk)s-%(prodSlt)s.stdout' % {
'prodNameOnly': j.task.soft,
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt
}
logger.info(STDOUTFILE)
STDERRFILE = '%(prodNameOnly)s.%(runNumber)s-%(runChunk)s-%(prodSlt)s.stderr' % {
'prodNameOnly': j.task.soft,
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt
}
logger.info(STDERRFILE)
try:
file_year = j.file.split('/')[5]
logger.info(file_year)
except:
logger.error('Error while splitting file to get year')
sys.exit(1)
ProdPathAndName = j.task.home + j.task.path + j.task.soft
job = JobSpec()
job.taskID = j.task.id
job.jobDefinitionID = 0
job.jobName = '%(prodName)s-%(fileYear)s--%(runNumber)s-%(runChunk)s-%(prodSlt)s-%(phastVer)s' % {
'prodName': j.task.soft,
'fileYear': file_year,
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt,
'phastVer': j.task.phastver
}
job.transformation = j.task.type # payload (can be URL as well)
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 2000
job.prodSourceLabel = 'prod_test'
job.computingSite = site
job.attemptNr = j.attempt + 1
job.maxAttempt = j.task.max_attempts
if j.status == 'failed':
job.parentID = j.panda_id
head, tail = os.path.split(j.file)
# job.transferType = 'direct'
job.sourceSite = 'CERN_COMPASS_PROD'
# logs, and all files generated during execution will be placed in log (except output file)
#job.jobParameters='source /afs/cern.ch/project/eos/installation/compass/etc/setup.sh;export EOS_MGM_URL=root://eoscompass.cern.ch;export PATH=/afs/cern.ch/project/eos/installation/compass/bin:$PATH;ppwd=$(pwd);echo $ppwd;export TMPMDSTFILE=%(TMPMDSTFILE)s;export TMPHISTFILE=%(TMPHISTFILE)s;export TMPRICHFILE=%(TMPRICHFILE)s;coralpath=%(ProdPathAndName)s/coral;echo $coralpath;cd -P $coralpath;export coralpathsetup=$coralpath"/setup.sh";echo $coralpathsetup;source $coralpathsetup;cd $ppwd;$CORAL/../phast/coral/coral.exe %(ProdPathAndName)s/template.opt;xrdcp -np $ppwd/%(TMPMDSTFILE)s xroot://eoscompass.cern.ch//eos/compass/%(prodName)s/mDST/%(TMPMDSTFILE)s;xrdcp -np $ppwd/%(TMPHISTFILE)s xroot://eoscompass.cern.ch//eos/compass/%(prodName)s/histos/%(TMPHISTFILE)s;metadataxml=$(ls metadata-*);echo $metadataxml;cp $metadataxml $metadataxml.PAYLOAD;' % {'TMPMDSTFILE': TMPMDSTFILE, 'TMPHISTFILE': TMPHISTFILE, 'TMPRICHFILE': TMPRICHFILE, 'input_file': input_file, 'ProdPathAndName': ProdPathAndName, 'prodName': prodName}
job.jobParameters = 'export EOS_MGM_URL=root://eoscompass.cern.ch;ppwd=$(pwd);export COMPASS_SW_PREFIX=/eos/experiment/compass/;export COMPASS_SW_PATH=%(prodPath)s;export COMPASS_PROD_NAME=%(prodName)s;export TMPRAWFILE=%(TMPRAWFILE)s;export TMPMDSTFILE=%(TMPMDSTFILE)s;export TMPHISTFILE=%(TMPHISTFILE)s;export TMPRICHFILE=%(TMPRICHFILE)s;export prodSlt=%(prodSlt)s;export EVTDUMPFILE=%(EVTDUMPFILE)s;xrdcp -N -f root://castorpublic.cern.ch/%(input_file)s\?svcClass=compasscdr .;coralpath=%(ProdPathAndName)s/coral;cd -P $coralpath;export coralpathsetup=$coralpath"/setup.sh";source $coralpathsetup;cd $ppwd;$CORAL/../phast/coral/coral.exe %(ProdPathAndName)s/%(template)s;if [ ! -s testevtdump.raw ]; then echo "PanDA message: the file is empty">testevtdump.raw; fi;cp payload_stderr.txt payload_stderr.out;cp payload_stdout.txt payload_stdout.out;rm %(tail)s' % {
'TMPRAWFILE': TMPRAWFILE,
'TMPMDSTFILE': TMPMDSTFILE,
'TMPHISTFILE': TMPHISTFILE,
'TMPRICHFILE': TMPRICHFILE,
'input_file': j.file,
'ProdPathAndName': ProdPathAndName,
'prodPath': j.task.path,
'prodName': j.task.soft,
'template': j.task.template,
'tail': tail,
'prodSlt': j.task.prodslt,
'EVTDUMPFILE': EVTDUMPFILE,
'STDOUTFILE': STDOUTFILE,
'STDERRFILE': STDERRFILE
}
fileIRaw = FileSpec()
fileIRaw.lfn = "%s" % (j.file)
fileIRaw.GUID = '5874a461-61d3-4543-8f34-6fd7a4624e78'
fileIRaw.fsize = 1073753368
fileIRaw.checksum = '671608be'
fileIRaw.destinationDBlock = job.destinationDBlock
fileIRaw.destinationSE = job.destinationSE
fileIRaw.dataset = job.destinationDBlock
fileIRaw.type = 'input'
job.addFile(fileIRaw)
fileOstdout = FileSpec()
fileOstdout.lfn = "payload_stdout.txt"
fileOstdout.destinationDBlock = job.destinationDBlock
fileOstdout.destinationSE = job.destinationSE
fileOstdout.dataset = job.destinationDBlock
fileOstdout.type = 'output'
job.addFile(fileOstdout)
fileOstderr = FileSpec()
fileOstderr.lfn = "payload_stderr.txt"
fileOstderr.destinationDBlock = job.destinationDBlock
fileOstderr.destinationSE = job.destinationSE
fileOstderr.dataset = job.destinationDBlock
fileOstderr.type = 'output'
job.addFile(fileOstderr)
fileOLog = FileSpec()
fileOLog.lfn = "%(prodName)s-%(runNumber)s-%(runChunk)s-%(prodSlt)s-%(phastVer)s.job.log.tgz" % {
'prodName': j.task.soft,
'runNumber': j.run_number,
'runChunk': j.chunk_number,
'prodSlt': j.task.prodslt,
'phastVer': j.task.phastver
}
fileOLog.destinationDBlock = job.destinationDBlock
fileOLog.destinationSE = job.destinationSE
fileOLog.dataset = job.destinationDBlock
fileOLog.type = 'log'
job.addFile(fileOLog)
fileOmDST = FileSpec()
fileOmDST.lfn = "%s" % (TMPMDSTFILE)
fileOmDST.destinationDBlock = job.destinationDBlock
fileOmDST.destinationSE = job.destinationSE
fileOmDST.dataset = job.destinationDBlock
fileOmDST.type = 'output'
job.addFile(fileOmDST)
fileOTrafdic = FileSpec()
fileOTrafdic.lfn = "%s" % (TMPHISTFILE)
fileOTrafdic.destinationDBlock = job.destinationDBlock
fileOTrafdic.destinationSE = job.destinationSE
fileOTrafdic.dataset = job.destinationDBlock
fileOTrafdic.type = 'output'
job.addFile(fileOTrafdic)
fileOtestevtdump = FileSpec()
fileOtestevtdump.lfn = "testevtdump.raw"
fileOtestevtdump.destinationDBlock = job.destinationDBlock
fileOtestevtdump.destinationSE = job.destinationSE
fileOtestevtdump.dataset = job.destinationDBlock
fileOtestevtdump.type = 'output'
job.addFile(fileOtestevtdump)
s, o = Client.submitJobs([job], srvID=aSrvID)
logger.info(s)
logger.info(o)
# for x in o:
# logger.info("PandaID=%s" % x[0])
# today = datetime.datetime.today()
#
# if x[0] != 0 and x[0] != 'NULL':
# j_update = Job.objects.get(id=j.id)
# j_update.panda_id = x[0]
# j_update.status = 'sent'
# j_update.attempt = j_update.attempt + 1
# j_update.date_updated = today
#
# try:
# j_update.save()
# logger.info('Job %s with PandaID %s updated at %s' % (j.id, x[0], today))
# except IntegrityError as e:
# logger.exception('Unique together catched, was not saved')
# except DatabaseError as e:
# logger.exception('Something went wrong while saving: %s' % e.message)
# else:
# logger.info('Job %s was not added to PanDA' % j.id)
i += 1
logger.info('done')
job.transformation = 'http://pandawms.org/pandawms-jobcache/lsst-trf-phosim332.sh'
job.destinationDBlock = datasetName
#job.destinationSE = destName
job.destinationSE = 'local'
job.currentPriority = 1000
#job.prodSourceLabel = 'ptest'
#job.prodSourceLabel = 'panda'
#job.prodSourceLabel = 'ptest'
#job.prodSourceLabel = 'test'
#job.prodSourceLabel = 'ptest'
### 2014-01-27
#job.prodSourceLabel = 'user'
job.prodSourceLabel = 'panda'
job.computingSite = site
job.jobParameters = ""
job.VO = "lsst"
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % job.jobName
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
job.addFile(fileOL)
s,o = Client.submitJobs([job],srvID=aSrvID)
print s
for x in o:
print "PandaID=%s" % x[0]
job.AtlasRelease = 'Atlas-9.0.4'
job.prodDBlock = 'pandatest.000003.dd.input'
job.destinationDBlock = 'panda.destDB.%s' % commands.getoutput(
'/usr/bin/uuidgen')
job.destinationSE = 'BNL_SE'
ids = {
'pandatest.000003.dd.input._00028.junk':
'6c19e1fc-ee8c-4bae-bd4c-c9e5c73aca27',
'pandatest.000003.dd.input._00033.junk':
'98f79ba1-1793-4253-aac7-bdf90a51d1ee',
'pandatest.000003.dd.input._00039.junk':
'33660dd5-7cef-422a-a7fc-6c24cb10deb1'
}
for lfn in ids.keys():
file = FileSpec()
file.lfn = lfn
file.GUID = ids[file.lfn]
file.dataset = 'pandatest.000003.dd.input'
file.type = 'input'
job.addFile(file)
s, o = Client.submitJobs([job])
print "---------------------"
print s
print o
print "---------------------"
s, o = Client.getJobStatus([4934, 4766, 4767, 4768, 4769])
print s
if s == 0:
for job in o:
def master_prepare(self, app, appconfig):
'''Prepare the master job'''
from pandatools import Client
from taskbuffer.JobSpec import JobSpec
from taskbuffer.FileSpec import FileSpec
job = app._getParent()
logger.debug('ExecutablePandaRTHandler master_prepare called for %s',
job.getFQID('.'))
# set chirp variables
if configPanda['chirpconfig'] or configPanda['chirpserver']:
setChirpVariables()
# Pack inputsandbox
inputsandbox = 'sources.%s.tar' % commands.getoutput(
'uuidgen 2> /dev/null')
inpw = job.getInputWorkspace()
# add user script to inputsandbox
if hasattr(job.application.exe, "name"):
if not job.application.exe in job.inputsandbox:
job.inputsandbox.append(job.application.exe)
for fname in [f.name for f in job.inputsandbox]:
fname.rstrip(os.sep)
path = fname[:fname.rfind(os.sep)]
f = fname[fname.rfind(os.sep) + 1:]
rc, output = commands.getstatusoutput(
'tar rf %s -C %s %s' % (inpw.getPath(inputsandbox), path, f))
if rc:
logger.error('Packing inputsandbox failed with status %d', rc)
logger.error(output)
raise ApplicationConfigurationError(
None, 'Packing inputsandbox failed.')
if len(job.inputsandbox) > 0:
rc, output = commands.getstatusoutput('gzip %s' %
(inpw.getPath(inputsandbox)))
if rc:
logger.error('Packing inputsandbox failed with status %d', rc)
logger.error(output)
raise ApplicationConfigurationError(
None, 'Packing inputsandbox failed.')
inputsandbox += ".gz"
else:
inputsandbox = None
# Upload Inputsandbox
if inputsandbox:
logger.debug('Uploading source tarball ...')
uploadSources(inpw.getPath(), os.path.basename(inputsandbox))
self.inputsandbox = inputsandbox
else:
self.inputsandbox = None
# input dataset
if job.inputdata:
if job.inputdata._name != 'DQ2Dataset':
raise ApplicationConfigurationError(
None, 'PANDA application supports only DQ2Datasets')
# run brokerage here if not splitting
if not job.splitter:
from GangaPanda.Lib.Panda.Panda import runPandaBrokerage
runPandaBrokerage(job)
elif job.splitter._name not in [
'DQ2JobSplitter', 'ArgSplitter', 'ArgSplitterTask'
]:
raise ApplicationConfigurationError(
None, 'Panda splitter must be DQ2JobSplitter or ArgSplitter')
if job.backend.site == 'AUTO':
raise ApplicationConfigurationError(
None, 'site is still AUTO after brokerage!')
# output dataset
if job.outputdata:
if job.outputdata._name != 'DQ2OutputDataset':
raise ApplicationConfigurationError(
None, 'Panda backend supports only DQ2OutputDataset')
else:
logger.info('Adding missing DQ2OutputDataset')
job.outputdata = DQ2OutputDataset()
job.outputdata.datasetname, outlfn = dq2outputdatasetname(
job.outputdata.datasetname, job.id, job.outputdata.isGroupDS,
job.outputdata.groupname)
self.outDsLocation = Client.PandaSites[job.backend.site]['ddm']
try:
Client.addDataset(job.outputdata.datasetname,
False,
location=self.outDsLocation)
logger.info('Output dataset %s registered at %s' %
(job.outputdata.datasetname, self.outDsLocation))
dq2_set_dataset_lifetime(job.outputdata.datasetname,
location=self.outDsLocation)
except exceptions.SystemExit:
raise BackendError(
'Panda', 'Exception in Client.addDataset %s: %s %s' %
(job.outputdata.datasetname, sys.exc_info()[0],
sys.exc_info()[1]))
# handle the libds
if job.backend.libds:
self.libDataset = job.backend.libds
self.fileBO = getLibFileSpecFromLibDS(self.libDataset)
self.library = self.fileBO.lfn
elif job.backend.bexec:
self.libDataset = job.outputdata.datasetname + '.lib'
self.library = '%s.tgz' % self.libDataset
try:
Client.addDataset(self.libDataset,
False,
location=self.outDsLocation)
dq2_set_dataset_lifetime(self.libDataset,
location=self.outDsLocation)
logger.info('Lib dataset %s registered at %s' %
(self.libDataset, self.outDsLocation))
except exceptions.SystemExit:
raise BackendError(
'Panda', 'Exception in Client.addDataset %s: %s %s' %
(self.libDataset, sys.exc_info()[0], sys.exc_info()[1]))
# collect extOutFiles
self.extOutFile = []
for tmpName in job.outputdata.outputdata:
if tmpName != '':
self.extOutFile.append(tmpName)
for tmpName in job.outputsandbox:
if tmpName != '':
self.extOutFile.append(tmpName)
for tmpName in job.backend.extOutFile:
if tmpName != '':
self.extOutFile.append(tmpName)
# create build job
if job.backend.bexec != '':
jspec = JobSpec()
jspec.jobDefinitionID = job.id
jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
jspec.transformation = '%s/buildGen-00-00-01' % Client.baseURLSUB
if Client.isDQ2free(job.backend.site):
jspec.destinationDBlock = '%s/%s' % (
job.outputdata.datasetname, self.libDataset)
jspec.destinationSE = 'local'
else:
jspec.destinationDBlock = self.libDataset
jspec.destinationSE = job.backend.site
jspec.prodSourceLabel = configPanda['prodSourceLabelBuild']
jspec.processingType = configPanda['processingType']
jspec.assignedPriority = configPanda['assignedPriorityBuild']
jspec.computingSite = job.backend.site
jspec.cloud = job.backend.requirements.cloud
jspec.jobParameters = '-o %s' % (self.library)
if self.inputsandbox:
jspec.jobParameters += ' -i %s' % (self.inputsandbox)
else:
raise ApplicationConfigurationError(
None,
'Executable on Panda with build job defined, but inputsandbox is emtpy !'
)
matchURL = re.search('(http.*://[^/]+)/', Client.baseURLCSRVSSL)
if matchURL:
jspec.jobParameters += ' --sourceURL %s ' % matchURL.group(1)
if job.backend.bexec != '':
jspec.jobParameters += ' --bexec "%s" ' % urllib.quote(
job.backend.bexec)
jspec.jobParameters += ' -r %s ' % '.'
fout = FileSpec()
fout.lfn = self.library
fout.type = 'output'
fout.dataset = self.libDataset
fout.destinationDBlock = self.libDataset
jspec.addFile(fout)
flog = FileSpec()
flog.lfn = '%s.log.tgz' % self.libDataset
flog.type = 'log'
flog.dataset = self.libDataset
flog.destinationDBlock = self.libDataset
jspec.addFile(flog)
return jspec
else:
return None
def prepare(self, app, appsubconfig, appmasterconfig, jobmasterconfig):
"""Prepare the specific aspec of each subjob.
Returns: subjobconfig list of objects understood by backends."""
from pandatools import Client
from pandatools import AthenaUtils
from taskbuffer.JobSpec import JobSpec
from taskbuffer.FileSpec import FileSpec
from GangaAtlas.Lib.ATLASDataset.DQ2Dataset import dq2_set_dataset_lifetime
from GangaPanda.Lib.Panda.Panda import refreshPandaSpecs
# make sure we have the correct siteType
refreshPandaSpecs()
job = app._getParent()
masterjob = job._getRoot()
logger.debug('ProdTransPandaRTHandler prepare called for %s',
job.getFQID('.'))
job.backend.actualCE = job.backend.site
job.backend.requirements.cloud = Client.PandaSites[
job.backend.site]['cloud']
# check that the site is in a submit-able status
if not job.splitter or job.splitter._name != 'DQ2JobSplitter':
allowed_sites = job.backend.list_ddm_sites()
try:
outDsLocation = Client.PandaSites[job.backend.site]['ddm']
tmpDsExist = False
if (configPanda['processingType'].startswith('gangarobot') or
configPanda['processingType'].startswith('hammercloud')):
#if Client.getDatasets(job.outputdata.datasetname):
if getDatasets(job.outputdata.datasetname):
tmpDsExist = True
logger.info('Re-using output dataset %s' %
job.outputdata.datasetname)
if not configPanda[
'specialHandling'] == 'ddm:rucio' and not configPanda[
'processingType'].startswith(
'gangarobot'
) and not configPanda['processingType'].startswith(
'hammercloud') and not configPanda[
'processingType'].startswith('rucio_test'):
Client.addDataset(job.outputdata.datasetname,
False,
location=outDsLocation,
allowProdDisk=True,
dsExist=tmpDsExist)
logger.info('Output dataset %s registered at %s' %
(job.outputdata.datasetname, outDsLocation))
dq2_set_dataset_lifetime(job.outputdata.datasetname, outDsLocation)
except exceptions.SystemExit:
raise BackendError(
'Panda', 'Exception in adding dataset %s: %s %s' %
(job.outputdata.datasetname, sys.exc_info()[0],
sys.exc_info()[1]))
# JobSpec.
jspec = JobSpec()
jspec.currentPriority = app.priority
jspec.jobDefinitionID = masterjob.id
jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
jspec.coreCount = app.core_count
jspec.AtlasRelease = 'Atlas-%s' % app.atlas_release
jspec.homepackage = app.home_package
jspec.transformation = app.transformation
jspec.destinationDBlock = job.outputdata.datasetname
if job.outputdata.location:
jspec.destinationSE = job.outputdata.location
else:
jspec.destinationSE = job.backend.site
if job.inputdata:
jspec.prodDBlock = job.inputdata.dataset[0]
else:
jspec.prodDBlock = 'NULL'
if app.prod_source_label:
jspec.prodSourceLabel = app.prod_source_label
else:
jspec.prodSourceLabel = configPanda['prodSourceLabelRun']
jspec.processingType = configPanda['processingType']
jspec.specialHandling = configPanda['specialHandling']
jspec.computingSite = job.backend.site
jspec.cloud = job.backend.requirements.cloud
jspec.cmtConfig = app.atlas_cmtconfig
if app.dbrelease == 'LATEST':
try:
latest_dbrelease = getLatestDBReleaseCaching()
except:
from pandatools import Client
latest_dbrelease = Client.getLatestDBRelease()
m = re.search('(.*):DBRelease-(.*)\.tar\.gz', latest_dbrelease)
if m:
self.dbrelease_dataset = m.group(1)
self.dbrelease = m.group(2)
else:
raise ApplicationConfigurationError(
None,
"Error retrieving LATEST DBRelease. Try setting application.dbrelease manually."
)
else:
self.dbrelease_dataset = app.dbrelease_dataset
self.dbrelease = app.dbrelease
jspec.jobParameters = app.job_parameters
if self.dbrelease:
if self.dbrelease == 'current':
jspec.jobParameters += ' --DBRelease=current'
else:
if jspec.transformation.endswith(
"_tf.py") or jspec.transformation.endswith("_tf"):
jspec.jobParameters += ' --DBRelease=DBRelease-%s.tar.gz' % (
self.dbrelease, )
else:
jspec.jobParameters += ' DBRelease=DBRelease-%s.tar.gz' % (
self.dbrelease, )
dbspec = FileSpec()
dbspec.lfn = 'DBRelease-%s.tar.gz' % self.dbrelease
dbspec.dataset = self.dbrelease_dataset
dbspec.prodDBlock = jspec.prodDBlock
dbspec.type = 'input'
jspec.addFile(dbspec)
if job.inputdata:
m = re.search('(.*)\.(.*)\.(.*)\.(.*)\.(.*)\.(.*)',
job.inputdata.dataset[0])
if not m:
logger.error("Error retrieving run number from dataset name")
#raise ApplicationConfigurationError(None, "Error retrieving run number from dataset name")
runnumber = 105200
else:
runnumber = int(m.group(2))
if jspec.transformation.endswith(
"_tf.py") or jspec.transformation.endswith("_tf"):
jspec.jobParameters += ' --runNumber %d' % runnumber
else:
jspec.jobParameters += ' RunNumber=%d' % runnumber
# Output files.
randomized_lfns = []
ilfn = 0
for lfn, lfntype in zip(app.output_files, app.output_type):
ofspec = FileSpec()
if app.randomize_lfns:
randomized_lfn = lfn + (
'.%s.%d.%s' %
(job.backend.site, int(time.time()),
commands.getoutput('uuidgen 2> /dev/null')[:4]))
else:
randomized_lfn = lfn
ofspec.lfn = randomized_lfn
randomized_lfns.append(randomized_lfn)
ofspec.destinationDBlock = jspec.destinationDBlock
ofspec.destinationSE = jspec.destinationSE
ofspec.dataset = jspec.destinationDBlock
ofspec.type = 'output'
jspec.addFile(ofspec)
if jspec.transformation.endswith(
"_tf.py") or jspec.transformation.endswith("_tf"):
jspec.jobParameters += ' --output%sFile %s' % (
lfntype, randomized_lfns[ilfn])
else:
jspec.jobParameters += ' output%sFile=%s' % (
lfntype, randomized_lfns[ilfn])
ilfn = ilfn + 1
# Input files.
if job.inputdata:
for guid, lfn, size, checksum, scope in zip(
job.inputdata.guids, job.inputdata.names,
job.inputdata.sizes, job.inputdata.checksums,
job.inputdata.scopes):
ifspec = FileSpec()
ifspec.lfn = lfn
ifspec.GUID = guid
ifspec.fsize = size
ifspec.md5sum = checksum
ifspec.scope = scope
ifspec.dataset = jspec.prodDBlock
ifspec.prodDBlock = jspec.prodDBlock
ifspec.type = 'input'
jspec.addFile(ifspec)
if app.input_type:
itype = app.input_type
else:
itype = m.group(5)
if jspec.transformation.endswith(
"_tf.py") or jspec.transformation.endswith("_tf"):
jspec.jobParameters += ' --input%sFile %s' % (itype, ','.join(
job.inputdata.names))
else:
jspec.jobParameters += ' input%sFile=%s' % (itype, ','.join(
job.inputdata.names))
# Log files.
lfspec = FileSpec()
lfspec.lfn = '%s.job.log.tgz' % jspec.jobName
lfspec.destinationDBlock = jspec.destinationDBlock
lfspec.destinationSE = jspec.destinationSE
lfspec.dataset = jspec.destinationDBlock
lfspec.type = 'log'
jspec.addFile(lfspec)
return jspec
job.prodSourceLabel = 'managed'
# priority
job.assignedPriority = priority
job.currentPriority = priority
# CPU, memory,disk ### FIXME
# attempt number ### FIXME
# input files
if iDataset != 'NULL':
# remove _tidXXX
pat = re.sub('_tid\d+$', '', iDataset)
# search
m = re.search('(' + pat + '\S+)', line)
if m != None:
file = FileSpec()
file.lfn = m.group(1)
file.type = 'input'
file.dataset = iDataset
file.prodDBlock = iDataset
job.addFile(file)
# DB release
for i, lpar in enumerate(lparams):
if lpar == 'DBRelease':
file = FileSpec()
file.lfn = "%s-%s.tgz" % (lpar, vparams[i])
file.type = 'input'
file.dataset = iDataset
file.prodDBlock = iDataset
job.addFile(file)
break
def defineEvgen16Job(self, i):
"""Define an Evgen16 job based on predefined values and randomly generated names
"""
job = JobSpec()
job.computingSite = self.__site
job.cloud = self.__cloud
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = "%s_%d" % (uuid.uuid1(), i)
job.AtlasRelease = 'Atlas-16.6.2'
job.homepackage = 'AtlasProduction/16.6.2.1'
job.transformation = 'Evgen_trf.py'
job.destinationDBlock = self.__datasetName
job.destinationSE = self.__destName
job.currentPriority = 10000
job.prodSourceLabel = 'test'
job.cmtConfig = 'i686-slc5-gcc43-opt'
#Output file
fileO = FileSpec()
fileO.lfn = "%s.evgen.pool.root" % job.jobName
fileO.destinationDBlock = job.destinationDBlock
fileO.destinationSE = job.destinationSE
fileO.dataset = job.destinationDBlock
fileO.destinationDBlockToken = 'ATLASDATADISK'
fileO.type = 'output'
job.addFile(fileO)
#Log file
fileL = FileSpec()
fileL.lfn = "%s.job.log.tgz" % job.jobName
fileL.destinationDBlock = job.destinationDBlock
fileL.destinationSE = job.destinationSE
fileL.dataset = job.destinationDBlock
fileL.destinationDBlockToken = 'ATLASDATADISK'
fileL.type = 'log'
job.addFile(fileL)
job.jobParameters = "2760 105048 19901 101 200 MC10.105048.PythiaB_ccmu3mu1X.py %s NONE NONE NONE MC10JobOpts-latest-test.tar.gz" % fileO.lfn
return job
from taskbuffer.JobSpec import JobSpec
from taskbuffer.FileSpec import FileSpec
job = JobSpec()
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = commands.getoutput('/usr/bin/uuidgen')
job.AtlasRelease = 'Atlas-9.0.4'
job.prodDBlock = 'pandatest.000003.dd.input'
job.destinationDBlock = 'panda.destDB.%s' % commands.getoutput('/usr/bin/uuidgen')
job.destinationSE = 'BNL_SE'
ids = {'pandatest.000003.dd.input._00028.junk':'6c19e1fc-ee8c-4bae-bd4c-c9e5c73aca27',
'pandatest.000003.dd.input._00033.junk':'98f79ba1-1793-4253-aac7-bdf90a51d1ee',
'pandatest.000003.dd.input._00039.junk':'33660dd5-7cef-422a-a7fc-6c24cb10deb1'}
for lfn in ids.keys():
file = FileSpec()
file.lfn = lfn
file.GUID = ids[file.lfn]
file.dataset = 'pandatest.000003.dd.input'
file.type = 'input'
job.addFile(file)
s,o = Client.submitJobs([job])
print "---------------------"
print s
print o
print "---------------------"
s,o = Client.getJobStatus([4934, 4766, 4767, 4768, 4769])
print s
if s == 0:
for job in o:
lfnListE = []
for i in range(2):
job = JobSpec()
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = commands.getoutput('uuidgen')
job.AtlasRelease = 'Atlas-11.0.3'
job.homepackage = 'JobTransforms-11-00-03-03'
job.transformation = 'share/csc.evgen.trf'
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 1000
job.prodSourceLabel = 'test'
job.computingSite = site
file = FileSpec()
file.lfn = "%s.evgen.pool.root" % commands.getoutput('uuidgen')
lfnListE.append(file.lfn)
file.lfn += ('.%d' % (i + 1))
file.destinationDBlock = job.destinationDBlock
file.destinationSE = job.destinationSE
file.dataset = job.destinationDBlock
file.type = 'output'
job.addFile(file)
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % commands.getoutput('uuidgen')
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
job = JobSpec()
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = commands.getoutput('uuidgen')
job.AtlasRelease = 'Atlas-11.0.41'
#job.AtlasRelease = 'Atlas-11.0.3'
job.homepackage = 'AnalysisTransforms'
job.transformation = 'https://gridui01.usatlas.bnl.gov:24443/dav/test/runAthena'
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 100
job.prodSourceLabel = 'user'
job.computingSite = site
#job.prodDBlock = "pandatest.b1599dfa-cd36-4fc5-92f6-495781a94c66"
job.prodDBlock = "pandatest.f228b051-077b-4f81-90bf-496340644379"
fileI = FileSpec()
fileI.dataset = job.prodDBlock
fileI.prodDBlock = job.prodDBlock
fileI.lfn = "lib.f228b051-077b-4f81-90bf-496340644379.tgz"
fileI.type = 'input'
job.addFile(fileI)
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % commands.getoutput('uuidgen')
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
job.addFile(fileOL)
fileOZ = FileSpec()
#job.transformation = 'http://pandawms.org/pandawms-jobcache/lsst-trf.sh'
job.transformation = 'http://pandawms.org/pandawms-jobcache/lsst-trf-phosim332.sh'
job.destinationDBlock = datasetName
#job.destinationSE = destName
job.destinationSE = 'local'
job.currentPriority = 1000
#job.prodSourceLabel = 'ptest'
#job.prodSourceLabel = 'panda'
#job.prodSourceLabel = 'ptest'
#job.prodSourceLabel = 'test'
#job.prodSourceLabel = 'ptest'
### 2014-01-27
#job.prodSourceLabel = 'user'
job.prodSourceLabel = 'panda'
job.computingSite = site
job.jobParameters = ""
job.VO = "lsst"
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % job.jobName
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
job.addFile(fileOL)
s, o = Client.submitJobs([job], srvID=aSrvID)
print s
for x in o:
print "PandaID=%s" % x[0]
destName = 'ANALY_BNL_ATLAS_1'
job = JobSpec()
job.jobDefinitionID = 1
job.jobName = commands.getoutput('uuidgen')
job.AtlasRelease = 'Atlas-12.0.2'
job.homepackage = 'AnalysisTransforms'
job.transformation = 'https://gridui01.usatlas.bnl.gov:24443/dav/test/runAthena2'
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 3000
job.prodSourceLabel = 'user'
job.computingSite = site
job.prodDBlock = 'testIdeal_06.005001.pythia_minbias.recon.AOD.v12000103'
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % commands.getoutput('uuidgen')
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
job.addFile(fileOL)
fileOZ = FileSpec()
fileOZ.lfn = "AANT.%s.root" % commands.getoutput('uuidgen')
fileOZ.destinationDBlock = job.destinationDBlock
fileOZ.destinationSE = job.destinationSE
fileOZ.dataset = job.destinationDBlock
fileOZ.type = 'output'
job.addFile(fileOZ)
job.jobName = "%s_%d" % (commands.getoutput('uuidgen'),index)
job.AtlasRelease = 'Atlas-12.0.6'
job.homepackage = 'AtlasProduction/12.0.6.4'
job.transformation = 'csc_reco_trf.py'
job.destinationDBlock = datasetName
job.destinationSE = destName
job.computingSite = site
#job.prodDBlock = 'misal1_mc12.005200.T1_McAtNlo_Jimmy.digit.RDO.v12000601_tid007554'
job.prodDBlock = 'misal1_mc12.005802.JF17_pythia_jet_filter.digit.RDO.v12000601_tid008610'
job.cloud = 'US'
job.prodSourceLabel = 'test'
job.currentPriority = 10000
job.cmtConfig = 'i686-slc4-gcc34-opt'
fileI = FileSpec()
fileI.dataset = job.prodDBlock
fileI.prodDBlock = job.prodDBlock
fileI.lfn = lfn
fileI.type = 'input'
job.addFile(fileI)
fileD = FileSpec()
fileD.dataset = 'ddo.000001.Atlas.Ideal.DBRelease.v030101'
fileD.prodDBlock = 'ddo.000001.Atlas.Ideal.DBRelease.v030101'
fileD.lfn = 'DBRelease-3.1.1.tar.gz'
fileD.type = 'input'
job.addFile(fileD)
fileOE = FileSpec()
fileOE.lfn = "%s.ESD.pool.root" % job.jobName
def master_prepare(self,app,appmasterconfig):
# PandaTools
from pandatools import Client
from pandatools import AthenaUtils
from taskbuffer.JobSpec import JobSpec
from taskbuffer.FileSpec import FileSpec
job = app._getParent()
logger.debug('AthenaMCPandaRTHandler master_prepare called for %s', job.getFQID('.'))
usertag = configDQ2['usertag']
#usertag='user09'
nickname = getNickname(allowMissingNickname=True)
self.libDataset = '%s.%s.ganga.%s_%d.lib._%06d' % (usertag,nickname,commands.getoutput('hostname').split('.')[0],int(time.time()),job.id)
# self.userprefix='%s.%s.ganga' % (usertag,gridProxy.identity())
sources = 'sources.%s.tar.gz' % commands.getoutput('uuidgen 2> /dev/null')
self.library = '%s.lib.tgz' % self.libDataset
# check DBRelease
# if job.backend.dbRelease != '' and job.backend.dbRelease.find(':') == -1:
# raise ApplicationConfigurationError(None,"ERROR : invalid argument for backend.dbRelease. Must be 'DatasetName:FileName'")
# unpack library
logger.debug('Creating source tarball ...')
tmpdir = '/tmp/%s' % commands.getoutput('uuidgen 2> /dev/null')
os.mkdir(tmpdir)
inputbox=[]
if os.path.exists(app.transform_archive):
# must add a condition on size.
inputbox += [ File(app.transform_archive) ]
if app.evgen_job_option:
self.evgen_job_option=app.evgen_job_option
if os.path.exists(app.evgen_job_option):
# locally modified job option file to add to the input sand box
inputbox += [ File(app.evgen_job_option) ]
self.evgen_job_option=app.evgen_job_option.split("/")[-1]
# add input sandbox files
if (job.inputsandbox):
for file in job.inputsandbox:
inputbox += [ file ]
# add option files
for extFile in job.backend.extOutFile:
try:
shutil.copy(extFile,tmpdir)
except IOError:
os.makedirs(tmpdir)
shutil.copy(extFile,tmpdir)
# fill the archive
for opt_file in inputbox:
try:
shutil.copy(opt_file.name,tmpdir)
except IOError:
os.makedirs(tmpdir)
shutil.copy(opt_file.name,tmpdir)
# now tar it up again
inpw = job.getInputWorkspace()
rc, output = commands.getstatusoutput('tar czf %s -C %s .' % (inpw.getPath(sources),tmpdir))
if rc:
logger.error('Packing sources failed with status %d',rc)
logger.error(output)
raise ApplicationConfigurationError(None,'Packing sources failed.')
shutil.rmtree(tmpdir)
# upload sources
logger.debug('Uploading source tarball ...')
try:
cwd = os.getcwd()
os.chdir(inpw.getPath())
rc, output = Client.putFile(sources)
if output != 'True':
logger.error('Uploading sources %s failed. Status = %d', sources, rc)
logger.error(output)
raise ApplicationConfigurationError(None,'Uploading archive failed')
finally:
os.chdir(cwd)
# Use Panda's brokerage
## if job.inputdata and len(app.sites)>0:
## # update cloud, use inputdata's
## from dq2.info.TiersOfATLAS import whichCloud,ToACache
## inclouds=[]
## for site in app.sites:
## cloudSite=whichCloud(app.sites[0])
## if cloudSite not in inclouds:
## inclouds.append(cloudSite)
## # now converting inclouds content into proper brokering stuff.
## outclouds=[]
## for cloudSite in inclouds:
## for cloudID, eachCloud in ToACache.dbcloud.iteritems():
## if cloudSite==eachCloud:
## cloud=cloudID
## outclouds.append(cloud)
## break
## print outclouds
## # finally, matching with user's wishes
## if len(outclouds)>0:
## if not job.backend.requirements.cloud: # no user wish, update
## job.backend.requirements.cloud=outclouds[0]
## else:
## try:
## assert job.backend.requirements.cloud in outclouds
## except:
## raise ApplicationConfigurationError(None,'Input dataset not available in target cloud %s. Please try any of the following %s' % (job.backend.requirements.cloud, str(outclouds)))
from GangaPanda.Lib.Panda.Panda import runPandaBrokerage
runPandaBrokerage(job)
if job.backend.site == 'AUTO':
raise ApplicationConfigurationError(None,'site is still AUTO after brokerage!')
# output dataset preparation and registration
try:
outDsLocation = Client.PandaSites[job.backend.site]['ddm']
except:
raise ApplicationConfigurationError(None,"Could not extract output dataset location from job.backend.site value: %s. Aborting" % job.backend.site)
if not app.dryrun:
for outtype in app.outputpaths.keys():
dset=string.replace(app.outputpaths[outtype],"/",".")
dset=dset[1:]
# dataset registration must be done only once.
print "registering output dataset %s at %s" % (dset,outDsLocation)
try:
Client.addDataset(dset,False,location=outDsLocation)
dq2_set_dataset_lifetime(dset, location=outDsLocation)
except:
raise ApplicationConfigurationError(None,"Fail to create output dataset %s. Aborting" % dset)
# extend registration to build job lib dataset:
print "registering output dataset %s at %s" % (self.libDataset,outDsLocation)
try:
Client.addDataset(self.libDataset,False,location=outDsLocation)
dq2_set_dataset_lifetime(self.libDataset, outDsLocation)
except:
raise ApplicationConfigurationError(None,"Fail to create output dataset %s. Aborting" % self.libDataset)
###
cacheVer = "-AtlasProduction_" + str(app.prod_release)
logger.debug("master job submit?")
self.outsite=job.backend.site
if app.se_name and app.se_name != "none" and not self.outsite:
self.outsite=app.se_name
# create build job
jspec = JobSpec()
jspec.jobDefinitionID = job.id
jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
jspec.AtlasRelease = 'Atlas-%s' % app.atlas_rel
jspec.homepackage = 'AnalysisTransforms'+cacheVer#+nightVer
jspec.transformation = '%s/buildJob-00-00-03' % Client.baseURLSUB # common base to Athena and AthenaMC jobs: buildJob is a pilot job which takes care of all inputs for the real jobs (in prepare()
jspec.destinationDBlock = self.libDataset
jspec.destinationSE = job.backend.site
jspec.prodSourceLabel = 'panda'
jspec.assignedPriority = 2000
jspec.computingSite = job.backend.site
jspec.cloud = job.backend.requirements.cloud
# jspec.jobParameters = self.args not known yet
jspec.jobParameters = '-o %s' % (self.library)
if app.userarea:
print app.userarea
jspec.jobParameters += ' -i %s' % (os.path.basename(app.userarea))
else:
jspec.jobParameters += ' -i %s' % (sources)
jspec.cmtConfig = AthenaUtils.getCmtConfig(athenaVer=app.atlas_rel)
matchURL = re.search('(http.*://[^/]+)/',Client.baseURLSSL)
if matchURL:
jspec.jobParameters += ' --sourceURL %s' % matchURL.group(1)
fout = FileSpec()
fout.lfn = self.library
fout.type = 'output'
fout.dataset = self.libDataset
fout.destinationDBlock = self.libDataset
jspec.addFile(fout)
flog = FileSpec()
flog.lfn = '%s.log.tgz' % self.libDataset
flog.type = 'log'
flog.dataset = self.libDataset
flog.destinationDBlock = self.libDataset
jspec.addFile(flog)
#print "MASTER JOB DETAILS:",jspec.jobParameters
return jspec
for i in range(2):
job = JobSpec()
job.jobDefinitionID = jobDefinitionID
job.jobName = "%s_%d" % (commands.getoutput('uuidgen'),i)
job.AtlasRelease = 'Atlas-12.0.6'
job.homepackage = 'AnalysisTransforms'
job.transformation = 'https://gridui01.usatlas.bnl.gov:24443/dav/test/runAthenaXrd'
job.destinationDBlock = datasetName
job.destinationSE = destName
job.currentPriority = 3000
job.assignedPriority = 3000
job.prodSourceLabel = 'user'
job.computingSite = site
file = FileSpec()
file.lfn = "%s.AANT._%05d.root" % (job.jobName,i)
file.destinationDBlock = job.destinationDBlock
file.destinationSE = job.destinationSE
file.dataset = job.destinationDBlock
file.type = 'output'
job.addFile(file)
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % job.jobName
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
job.addFile(fileOL)
job = JobSpec()
job.jobDefinitionID = int(time.time()) % 10000
job.jobName = "%s_%d" % (commands.getoutput('uuidgen'), index)
job.AtlasRelease = 'Atlas-13.0.40'
job.homepackage = 'AtlasProduction/13.0.40.3'
job.transformation = 'csc_simul_trf.py'
job.destinationDBlock = datasetName
job.destinationSE = destName
job.computingSite = site
job.prodDBlock = 'valid1.005001.pythia_minbias.evgen.EVNT.e306_tid019128'
job.prodSourceLabel = 'test'
job.currentPriority = 10000
job.cloud = 'IT'
fileI = FileSpec()
fileI.dataset = job.prodDBlock
fileI.prodDBlock = job.prodDBlock
fileI.lfn = lfn
fileI.type = 'input'
job.addFile(fileI)
fileD = FileSpec()
fileD.dataset = 'ddo.000001.Atlas.Ideal.DBRelease.v040701'
fileD.prodDBlock = 'ddo.000001.Atlas.Ideal.DBRelease.v030101'
fileD.lfn = 'DBRelease-4.7.1.tar.gz'
fileD.type = 'input'
job.addFile(fileD)
fileOE = FileSpec()
fileOE.lfn = "%s.HITS.pool.root" % job.jobName
job.jobDefinitionID = (time.time()) % 10000
job.jobName = "%s_%d" % (commands.getoutput('uuidgen'),index)
job.AtlasRelease = 'Atlas-17.0.5'
job.homepackage = 'AtlasProduction/17.0.5.6'
job.transformation = 'AtlasG4_trf.py'
job.destinationDBlock = datasetName
job.computingSite = site
job.prodDBlock = prodDBlock
job.prodSourceLabel = 'test'
job.processingType = 'test'
job.currentPriority = 10000
job.cloud = cloud
job.cmtConfig = 'i686-slc5-gcc43-opt'
fileI = FileSpec()
fileI.dataset = job.prodDBlock
fileI.prodDBlock = job.prodDBlock
fileI.lfn = lfn
fileI.type = 'input'
job.addFile(fileI)
fileD = FileSpec()
fileD.dataset = 'ddo.000001.Atlas.Ideal.DBRelease.v170602'
fileD.prodDBlock = fileD.dataset
fileD.lfn = 'DBRelease-17.6.2.tar.gz'
fileD.type = 'input'
job.addFile(fileD)
fileOA = FileSpec()
fileOA.lfn = "%s.HITS.pool.root" % job.jobName
def master_prepare(self,app,appconfig):
'''Prepare the master job'''
from pandatools import Client
from taskbuffer.JobSpec import JobSpec
from taskbuffer.FileSpec import FileSpec
job = app._getParent()
logger.debug('ExecutablePandaRTHandler master_prepare called for %s', job.getFQID('.'))
# set chirp variables
if configPanda['chirpconfig'] or configPanda['chirpserver']:
setChirpVariables()
# Pack inputsandbox
inputsandbox = 'sources.%s.tar' % commands.getoutput('uuidgen 2> /dev/null')
inpw = job.getInputWorkspace()
# add user script to inputsandbox
if hasattr(job.application.exe, "name"):
if not job.application.exe in job.inputsandbox:
job.inputsandbox.append(job.application.exe)
for fname in [f.name for f in job.inputsandbox]:
fname.rstrip(os.sep)
path = fname[:fname.rfind(os.sep)]
f = fname[fname.rfind(os.sep)+1:]
rc, output = commands.getstatusoutput('tar rf %s -C %s %s' % (inpw.getPath(inputsandbox), path, f))
if rc:
logger.error('Packing inputsandbox failed with status %d',rc)
logger.error(output)
raise ApplicationConfigurationError('Packing inputsandbox failed.')
if len(job.inputsandbox) > 0:
rc, output = commands.getstatusoutput('gzip %s' % (inpw.getPath(inputsandbox)))
if rc:
logger.error('Packing inputsandbox failed with status %d',rc)
logger.error(output)
raise ApplicationConfigurationError('Packing inputsandbox failed.')
inputsandbox += ".gz"
else:
inputsandbox = None
# Upload Inputsandbox
if inputsandbox:
logger.debug('Uploading source tarball ...')
uploadSources(inpw.getPath(),os.path.basename(inputsandbox))
self.inputsandbox = inputsandbox
else:
self.inputsandbox = None
# input dataset
if job.inputdata:
if job.inputdata._name != 'DQ2Dataset':
raise ApplicationConfigurationError('PANDA application supports only DQ2Datasets')
# run brokerage here if not splitting
if not job.splitter:
from GangaPanda.Lib.Panda.Panda import runPandaBrokerage
runPandaBrokerage(job)
elif job.splitter._name not in ['DQ2JobSplitter', 'ArgSplitter', 'ArgSplitterTask']:
raise ApplicationConfigurationError('Panda splitter must be DQ2JobSplitter or ArgSplitter')
if job.backend.site == 'AUTO':
raise ApplicationConfigurationError('site is still AUTO after brokerage!')
# output dataset
if job.outputdata:
if job.outputdata._name != 'DQ2OutputDataset':
raise ApplicationConfigurationError('Panda backend supports only DQ2OutputDataset')
else:
logger.info('Adding missing DQ2OutputDataset')
job.outputdata = DQ2OutputDataset()
job.outputdata.datasetname,outlfn = dq2outputdatasetname(job.outputdata.datasetname, job.id, job.outputdata.isGroupDS, job.outputdata.groupname)
self.outDsLocation = Client.PandaSites[job.backend.site]['ddm']
try:
Client.addDataset(job.outputdata.datasetname,False,location=self.outDsLocation)
logger.info('Output dataset %s registered at %s'%(job.outputdata.datasetname,self.outDsLocation))
dq2_set_dataset_lifetime(job.outputdata.datasetname, location=self.outDsLocation)
except exceptions.SystemExit:
raise BackendError('Panda','Exception in Client.addDataset %s: %s %s'%(job.outputdata.datasetname,sys.exc_info()[0],sys.exc_info()[1]))
# handle the libds
if job.backend.libds:
self.libDataset = job.backend.libds
self.fileBO = getLibFileSpecFromLibDS(self.libDataset)
self.library = self.fileBO.lfn
elif job.backend.bexec:
self.libDataset = job.outputdata.datasetname+'.lib'
self.library = '%s.tgz' % self.libDataset
try:
Client.addDataset(self.libDataset,False,location=self.outDsLocation)
dq2_set_dataset_lifetime(self.libDataset, location=self.outDsLocation)
logger.info('Lib dataset %s registered at %s'%(self.libDataset,self.outDsLocation))
except exceptions.SystemExit:
raise BackendError('Panda','Exception in Client.addDataset %s: %s %s'%(self.libDataset,sys.exc_info()[0],sys.exc_info()[1]))
# collect extOutFiles
self.extOutFile = []
for tmpName in job.outputdata.outputdata:
if tmpName != '':
self.extOutFile.append(tmpName)
for tmpName in job.outputsandbox:
if tmpName != '':
self.extOutFile.append(tmpName)
for tmpName in job.backend.extOutFile:
if tmpName != '':
self.extOutFile.append(tmpName)
# create build job
if job.backend.bexec != '':
jspec = JobSpec()
jspec.jobDefinitionID = job.id
jspec.jobName = commands.getoutput('uuidgen 2> /dev/null')
jspec.transformation = '%s/buildGen-00-00-01' % Client.baseURLSUB
if Client.isDQ2free(job.backend.site):
jspec.destinationDBlock = '%s/%s' % (job.outputdata.datasetname,self.libDataset)
jspec.destinationSE = 'local'
else:
jspec.destinationDBlock = self.libDataset
jspec.destinationSE = job.backend.site
jspec.prodSourceLabel = configPanda['prodSourceLabelBuild']
jspec.processingType = configPanda['processingType']
jspec.assignedPriority = configPanda['assignedPriorityBuild']
jspec.computingSite = job.backend.site
jspec.cloud = job.backend.requirements.cloud
jspec.jobParameters = '-o %s' % (self.library)
if self.inputsandbox:
jspec.jobParameters += ' -i %s' % (self.inputsandbox)
else:
raise ApplicationConfigurationError('Executable on Panda with build job defined, but inputsandbox is emtpy !')
matchURL = re.search('(http.*://[^/]+)/',Client.baseURLCSRVSSL)
if matchURL:
jspec.jobParameters += ' --sourceURL %s ' % matchURL.group(1)
if job.backend.bexec != '':
jspec.jobParameters += ' --bexec "%s" ' % urllib.quote(job.backend.bexec)
jspec.jobParameters += ' -r %s ' % '.'
fout = FileSpec()
fout.lfn = self.library
fout.type = 'output'
fout.dataset = self.libDataset
fout.destinationDBlock = self.libDataset
jspec.addFile(fout)
flog = FileSpec()
flog.lfn = '%s.log.tgz' % self.libDataset
flog.type = 'log'
flog.dataset = self.libDataset
flog.destinationDBlock = self.libDataset
jspec.addFile(flog)
return jspec
else:
return None
job.AtlasRelease = 'Atlas-12.0.7'
job.homepackage = 'AtlasProduction/12.0.7.1'
# Need different args too
# job.AtlasRelease = 'Atlas-13.0.30'
# job.homepackage = 'AtlasProduction/13.0.30.2'
job.transformation = 'csc_simul_trf.py'
job.destinationDBlock = datasetName
job.cloud = cloud
job.computingSite = site
# job.prodDBlock = 'mc12.005001.pythia_minbias.evgen.EVNT.v12000701_tid012303'
job.prodDBlock = files[lfn]
job.prodSourceLabel = 'test'
# job.prodSourceLabel = 'cloudtest'
job.currentPriority = 1001
fileI = FileSpec()
fileI.dataset = job.prodDBlock
fileI.prodDBlock = job.prodDBlock
fileI.lfn = lfn
fileI.type = 'input'
job.addFile(fileI)
fileD = FileSpec()
fileD.dataset = 'ddo.000001.Atlas.Ideal.DBRelease.v030101'
fileD.prodDBlock = 'ddo.000001.Atlas.Ideal.DBRelease.v030101'
fileD.lfn = 'DBRelease-3.1.1.tar.gz'
fileD.type = 'input'
job.addFile(fileD)
fileOE = FileSpec()
# job.homepackage = 'AtlasProduction/12.0.6.5'
job.AtlasRelease = 'Atlas-12.0.7'
job.homepackage = 'AtlasProduction/12.0.7.1'
job.transformation = 'csc_evgen_trf.py'
job.destinationDBlock = datasetName
# job.destinationSE = destName
# job.cloud = 'CA'
job.cloud = cloud
job.taskID = taskid
job.currentPriority = 1000
job.prodSourceLabel = 'test'
# job.prodSourceLabel = 'cloudtest'
job.computingSite = site
file = FileSpec()
file.lfn = "%s.evgen.pool.root" % job.jobName
file.destinationDBlock = job.destinationDBlock
file.destinationSE = job.destinationSE
file.dataset = job.destinationDBlock
file.type = 'output'
job.addFile(file)
fileOL = FileSpec()
fileOL.lfn = "%s.job.log.tgz" % job.jobName
fileOL.destinationDBlock = job.destinationDBlock
fileOL.destinationSE = job.destinationSE
fileOL.dataset = job.destinationDBlock
fileOL.type = 'log'
job.addFile(fileOL)
#job.homepackage = 'AtlasProduction/20.20.8.4'
job.transformation = 'Reco_tf.py'
job.destinationDBlock = 'panda.destDB.%s' % commands.getoutput('uuidgen')
job.destinationSE = 'AGLT2_TEST'
job.prodDBlock = 'user.mlassnig:user.mlassnig.pilot.test.single.hits'
job.currentPriority = 1000
#job.prodSourceLabel = 'ptest'
job.prodSourceLabel = 'user'
job.computingSite = site
job.cloud = cloud
job.cmtConfig = 'x86_64-slc6-gcc48-opt'
job.specialHandling = 'ddm:rucio'
#job.transferType = 'direct'
ifile = 'HITS.06828093._000096.pool.root.1'
fileI = FileSpec()
fileI.GUID = 'AC5B3759-B606-BA42-8681-4BD86455AE02'
fileI.checksum = 'ad:5d000974'
fileI.dataset = 'user.mlassnig:user.mlassnig.pilot.test.single.hits'
fileI.fsize = 94834717
fileI.lfn = ifile
fileI.prodDBlock = job.prodDBlock
fileI.scope = 'mc15_13TeV'
fileI.type = 'input'
job.addFile(fileI)
ofile = 'RDO_%s.root' % commands.getoutput('uuidgen')
fileO = FileSpec()
fileO.dataset = job.destinationDBlock
fileO.destinationDBlock = job.destinationDBlock
fileO.destinationSE = job.destinationSE
