def build_decoder_block_for_analysis(z_size, token_emb_size, decoder_cell,
input_size):
c = td.Composition()
c.set_input_type(
td.TupleType(td.TensorType((z_size, )),
td.SequenceType(td.TensorType((input_size, )))))
with c.scope():
hidden_state = td.GetItem(0).reads(c.input)
rnn_input = td.GetItem(1).reads(c.input)
# decoder_output = build_program_decoder_for_analysis(
# token_emb_size, default_gru_cell(z_size)
# )
decoder_output = decoder_cell
decoder_output.reads(rnn_input, hidden_state)
decoder_rnn_output = td.GetItem(1).reads(decoder_output)
un_normalised_token_probs = td.GetItem(0).reads(decoder_output)
# get the first output (meant to only compute one interation)
c.output.reads(
td.GetItem(0).reads(un_normalised_token_probs),
td.GetItem(0).reads(decoder_rnn_output))
return td.Record((td.Vector(z_size), td.Map(td.Vector(input_size)))) >> c
def buid_sentence_expression():
sentence_tree = td.InputTransform(lambda sentence_json: WNJsonDecoder(sentence_json))
tree_rnn = td.ForwardDeclaration(td.PyObjectType())
leaf_case = td.GetItem('word_vec', name='leaf_in') >> td.Vector(embedding_size)
index_case = td.Record({'children': td.Map(tree_rnn()) >> td.Mean(), 'word_vec': td.Vector(embedding_size)}, name='index_in') >> td.Concat(name='concat_root_child') >> td.FC(embedding_size, name='FC_root_child')
expr_sentence = td.OneOf(td.GetItem('leaf'), {True: leaf_case, False: index_case}, name='recur_in')
tree_rnn.resolve_to(expr_sentence)
return sentence_tree >> expr_sentence
def build_train_graph_for_RVAE(rvae_block, look_behind_length=0):
token_emb_size = get_size_of_input_vecotrs(rvae_block)
c = td.Composition()
with c.scope():
padded_input_sequence = td.Map(td.Vector(token_emb_size)).reads(
c.input)
network_output = rvae_block
network_output.reads(padded_input_sequence)
un_normalised_token_probs = td.GetItem(0).reads(network_output)
mus_and_log_sigs = td.GetItem(1).reads(network_output)
input_sequence = td.Slice(
start=look_behind_length).reads(padded_input_sequence)
# TODO: metric that output of rnn is the same as input sequence
cross_entropy_loss = td.ZipWith(
td.Function(softmax_crossentropy)) >> td.Mean()
cross_entropy_loss.reads(un_normalised_token_probs, input_sequence)
kl_loss = td.Function(kl_divergence)
kl_loss.reads(mus_and_log_sigs)
td.Metric('cross_entropy_loss').reads(cross_entropy_loss)
td.Metric('kl_loss').reads(kl_loss)
c.output.reads(td.Void())
return c
def test_weighted_feature(self):
root, _ = self._load_test_data()
Wconvl = self.sess.run(tbcnn.param.get('Wconvl'))
Wconvr = self.sess.run(tbcnn.param.get('Wconvr'))
Wconvt = self.sess.run(tbcnn.param.get('Wconvt'))
idx, pclen, depth, max_depth = (1., 1., 0., 2.)
feature = tbcnn.coding_blk().eval(root, session=self.sess)
actual = (td.Vector(feature.size), td.Scalar(),
td.Scalar(), td.Scalar(), td.Scalar()) >> tbcnn.weighted_feature_blk()
actual = actual.eval((feature, idx, pclen, depth, max_depth), session=self.sess)
desired = np.matmul(feature,
tri_combined_np(idx, pclen, depth, max_depth, Wconvl, Wconvr, Wconvt))
nptest.assert_allclose(actual, desired)
def logits_and_state():
"""Creates a block that goes from tokens to (logits, state) tuples."""
unknown_idx = len(word_idx)
lookup_word = lambda word: word_idx.get(
word) # unknown_idx is the default return value
word2vec = (
td.GetItem(0) >> td.GetItem(0) >> td.InputTransform(lookup_word) >>
td.Scalar('int32') >> word_embedding
) # <td.Pipe>: None -> TensorType((200,), 'float32')
context2vec1 = td.GetItem(1) >> td.InputTransform(
makeContextMat) >> td.Vector(10)
context2vec2 = td.GetItem(1) >> td.InputTransform(
makeContextMat) >> td.Vector(10)
ent1posit1 = td.GetItem(2) >> td.InputTransform(
makeEntPositMat) >> td.Vector(10)
ent1posit2 = td.GetItem(2) >> td.InputTransform(
makeEntPositMat) >> td.Vector(10)
ent2posit1 = td.GetItem(3) >> td.InputTransform(
makeEntPositMat) >> td.Vector(10)
ent2posit2 = td.GetItem(3) >> td.InputTransform(
makeEntPositMat) >> td.Vector(10)
pairs2vec = td.GetItem(0) >> (embed_subtree(), embed_subtree())
# our binary Tree can have two child nodes, therefore, we assume the zero state have two child nodes.
zero_state = td.Zeros((tree_lstm.state_size, ) * 2)
# Input is a word vector.
zero_inp = td.Zeros(word_embedding.output_type.shape[0]
) # word_embedding.output_type.shape[0] == 200
word_case = td.AllOf(word2vec, zero_state, context2vec1, ent1posit1,
ent2posit1)
children_case = td.AllOf(zero_inp, pairs2vec, context2vec2, ent1posit2,
ent2posit2)
# if leaf case, go to word case...
tree2vec = td.OneOf(lambda x: 1
if len(x[0]) == 1 else 2, [(1, word_case),
(2, children_case)])
# tree2vec = td.OneOf(lambda pair: len(pair[0]), [(1, word_case), (2, children_case)])
# logits and lstm states
return tree2vec >> tree_lstm >> (output_layer, td.Identity())
def _compile(self):
with self.sess.as_default():
import tensorflow_fold as td
output_size = len(self.labels)
self.keep_prob = tf.placeholder_with_default(tf.constant(1.0),shape=None)
char_emb = td.Embedding(num_buckets=self.char_buckets,
num_units_out=self.embedding_size)
#initializer=tf.truncated_normal_initializer(stddev=0.15))
char_cell = td.ScopedLayer(tf.contrib.rnn.LSTMCell(num_units=self.rnn_dim), 'char_cell')
char_lstm = (td.InputTransform(lambda s: [ord(c) for c in s])
>> td.Map(td.Scalar('int32') >> char_emb)
>> td.RNN(char_cell) >> td.GetItem(1) >> td.GetItem(1))
rnn_fwdcell = td.ScopedLayer(tf.contrib.rnn.LSTMCell(num_units=self.rnn_dim), 'lstm_fwd')
fwdlayer = td.RNN(rnn_fwdcell) >> td.GetItem(0)
rnn_bwdcell = td.ScopedLayer(tf.contrib.rnn.LSTMCell(num_units=self.rnn_dim), 'lstm_bwd')
bwdlayer = (td.Slice(step=-1) >> td.RNN(rnn_bwdcell)
>> td.GetItem(0) >> td.Slice(step=-1))
pos_emb = td.Embedding(num_buckets=300,
num_units_out=32,
initializer=tf.truncated_normal_initializer(stddev=0.1))
pos_x = (td.InputTransform(lambda x: x + 150)
>> td.Scalar(dtype='int32')
>> pos_emb)
pos_y = (td.InputTransform(lambda x: x + 150)
>> td.Scalar(dtype='int32')
>> pos_emb)
input_layer = td.Map(td.Record((char_lstm,pos_x,pos_y)) >> td.Concat())
maxlayer = (td.AllOf(fwdlayer, bwdlayer)
>> td.ZipWith(td.Concat())
>> td.Max())
output_layer = (input_layer >>
maxlayer >> td.FC(output_size,
input_keep_prob=self.keep_prob,
activation=None))
self.compiler = td.Compiler.create((output_layer,
td.Vector(output_size,dtype=tf.int32)))
self.y_out, self.y_true = self.compiler.output_tensors
self.y_loss = tf.reduce_mean(
tf.nn.softmax_cross_entropy_with_logits(
logits=self.y_out,labels=self.y_true))
self.y_prob = tf.nn.softmax(self.y_out)
self.y_true_idx = tf.argmax(self.y_true,axis=1)
self.y_pred_idx = tf.argmax(self.y_prob,axis=1)
self.y_pred = tf.one_hot(self.y_pred_idx,depth=output_size,dtype=tf.int32)
epoch_step = tf.Variable(0, trainable=False)
self.epoch_step_op = tf.assign(epoch_step, epoch_step+1)
lrate_decay = tf.train.exponential_decay(self.lrate, epoch_step, 1, self.decay)
if self.optimizer == 'adam':
self.opt = tf.train.AdamOptimizer(learning_rate=lrate_decay)
elif self.optimizer == 'adagrad':
self.opt = tf.train.AdagradOptimizer(learning_rate=lrate_decay,
initial_accumulator_value=1e-08)
elif self.optimizer == 'rmsprop' or self.optimizer == 'default':
self.opt = tf.train.RMSPropOptimizer(learning_rate=lrate_decay,
epsilon=1e-08)
else:
raise Exception(('The optimizer {} is not in list of available '
+ 'optimizers: default, adam, adagrad, rmsprop.')
.format(self.optimizer))
# apply learning multiplier on on embedding learning rate
embeds = [pos_emb.weights, char_emb.weights]
grads_and_vars = self.opt.compute_gradients(self.y_loss)
found = 0
for i, (grad, var) in enumerate(grads_and_vars):
if var in embeds:
found += 1
grad = tf.scalar_mul(self.embedding_factor, grad)
grads_and_vars[i] = (grad, var)
assert found == len(embeds) # internal consistency check
self.train_step = self.opt.apply_gradients(grads_and_vars)
self.sess.run(tf.global_variables_initializer())
self.saver = tf.train.Saver(max_to_keep=100)
def _compile(self):
with self.sess.as_default():
import tensorflow_fold as td
output_size = len(self.labels)
self.keep_prob = tf.placeholder_with_default(tf.constant(1.0),shape=None)
fshape = (self.window_size * (self.char_embedding_size + self.char_feature_embedding_size), self.num_filters)
filt_w3 = tf.Variable(tf.random_normal(fshape, stddev=0.05))
def CNN_Window3(filters):
return td.Function(lambda a, b, c: cnn_operation([a,b,c],filters))
def cnn_operation(window_sequences,filters):
windows = tf.concat(window_sequences,axis=-1)
products = tf.multiply(tf.expand_dims(windows,axis=-1),filters)
return tf.reduce_sum(products,axis=-2)
char_emb = td.Embedding(num_buckets=self.char_buckets,
num_units_out=self.char_embedding_size)
cnn_layer = (td.NGrams(self.window_size)
>> td.Map(CNN_Window3(filt_w3))
>> td.Max())
# --------- char features
def charfeature_lookup(c):
if c in string.lowercase:
return 0
elif c in string.uppercase:
return 1
elif c in string.punctuation:
return 2
else:
return 3
char_input = td.Map(td.InputTransform(lambda c: ord(c.lower()))
>> td.Scalar('int32') >> char_emb)
char_features = td.Map(td.InputTransform(charfeature_lookup)
>> td.Scalar(dtype='int32')
>> td.Embedding(num_buckets=4,
num_units_out=self.char_feature_embedding_size))
charlevel = (td.InputTransform(lambda s: ['~'] + [ c for c in s ] + ['~'])
>> td.AllOf(char_input,char_features) >> td.ZipWith(td.Concat())
>> cnn_layer)
# --------- word features
word_emb = td.Embedding(num_buckets=len(self.word_vocab),
num_units_out=self.embedding_size,
initializer=self.word_embeddings)
wordlookup = lambda w: (self.word_vocab.index(w.lower())
if w.lower() in self.word_vocab else 0)
wordinput = (td.InputTransform(wordlookup)
>> td.Scalar(dtype='int32')
>> word_emb)
def wordfeature_lookup(w):
if re.match('^[a-z]+$',w):
return 0
elif re.match('^[A-Z][a-z]+$',w):
return 1
elif re.match('^[A-Z]+$',w):
return 2
elif re.match('^[A-Za-z]+$',w):
return 3
else:
return 4
wordfeature = (td.InputTransform(wordfeature_lookup)
>> td.Scalar(dtype='int32')
>> td.Embedding(num_buckets=5,
num_units_out=32))
#-----------
rnn_fwdcell = td.ScopedLayer(tf.contrib.rnn.LSTMCell(
num_units=self.rnn_dim), 'lstm_fwd')
fwdlayer = td.RNN(rnn_fwdcell) >> td.GetItem(0)
rnn_bwdcell = td.ScopedLayer(tf.contrib.rnn.LSTMCell(
num_units=self.rnn_dim), 'lstm_bwd')
bwdlayer = (td.Slice(step=-1) >> td.RNN(rnn_bwdcell)
>> td.GetItem(0) >> td.Slice(step=-1))
rnn_layer = td.AllOf(fwdlayer, bwdlayer) >> td.ZipWith(td.Concat())
output_layer = td.FC(output_size,
input_keep_prob=self.keep_prob,
activation=None)
wordlevel = td.AllOf(wordinput,wordfeature) >> td.Concat()
network = (td.Map(td.AllOf(wordlevel,charlevel) >> td.Concat())
>> rnn_layer
>> td.Map(output_layer)
>> td.Map(td.Metric('y_out'))) >> td.Void()
groundlabels = td.Map(td.Vector(output_size,dtype=tf.int32)
>> td.Metric('y_true')) >> td.Void()
self.compiler = td.Compiler.create((network, groundlabels))
self.y_out = self.compiler.metric_tensors['y_out']
self.y_true = self.compiler.metric_tensors['y_true']
self.y_loss = tf.reduce_mean(
tf.nn.softmax_cross_entropy_with_logits(
logits=self.y_out,labels=self.y_true))
self.y_prob = tf.nn.softmax(self.y_out)
self.y_true_idx = tf.argmax(self.y_true,axis=-1)
self.y_pred_idx = tf.argmax(self.y_prob,axis=-1)
self.y_pred = tf.one_hot(self.y_pred_idx,depth=output_size,dtype=tf.int32)
epoch_step = tf.Variable(0, trainable=False)
self.epoch_step_op = tf.assign(epoch_step, epoch_step+1)
lrate_decay = tf.train.exponential_decay(self.lrate, epoch_step, 1, self.decay)
if self.optimizer == 'adam':
self.opt = tf.train.AdamOptimizer(learning_rate=lrate_decay)
elif self.optimizer == 'adagrad':
self.opt = tf.train.AdagradOptimizer(learning_rate=lrate_decay,
initial_accumulator_value=1e-08)
elif self.optimizer == 'rmsprop':
self.opt = tf.train.RMSPropOptimizer(learning_rate=lrate_decay,
epsilon=1e-08)
else:
raise Exception(('The optimizer {} is not in list of available '
+ 'optimizers: default, adam, adagrad, rmsprop.')
.format(self.optimizer))
# apply learning multiplier on on embedding learning rate
embeds = [word_emb.weights]
grads_and_vars = self.opt.compute_gradients(self.y_loss)
found = 0
for i, (grad, var) in enumerate(grads_and_vars):
if var in embeds:
found += 1
grad = tf.scalar_mul(self.embedding_factor, grad)
grads_and_vars[i] = (grad, var)
assert found == len(embeds) # internal consistency check
self.train_step = self.opt.apply_gradients(grads_and_vars)
self.sess.run(tf.global_variables_initializer())
self.saver = tf.train.Saver(max_to_keep=100)
forward_dir = (td.RNN(fw_cell) >> td.GetItem(0)).reads(fw_seq)
back_dir = (td.RNN(bw_cell) >> td.GetItem(0)).reads(bw_seq)
back_to_leftright = td.Slice(step=-1).reads(back_dir)
output_transform = td.FC(1, activation=None)
bidir_common = (td.ZipWith(
td.Concat() >> output_transform >> td.Metric('logits'))).reads(
forward_dir, back_to_leftright)
bidir_conv_lstm.output.reads(bidir_common)
return bidir_conv_lstm
CONV_data = td.Record((td.Map(
td.Vector(vsize) >> td.Function(lambda x: tf.reshape(x, [-1, vsize, 1]))),
td.Map(td.Scalar())))
CONV_model = (CONV_data >> bidirectional_dynamic_CONV(
multi_convLSTM_cell([vsize, vsize, vsize], [100, 100, 100]),
multi_convLSTM_cell([vsize, vsize, vsize], [100, 100, 100])) >> td.Void())
FC_data = td.Record((td.Map(td.Vector(vsize)), td.Map(td.Scalar())))
FC_model = (FC_data >> bidirectional_dynamic_FC(multi_FC_cell(
[1000] * 5), multi_FC_cell([1000] * 5), 1000) >> td.Void())
store = data(FLAGS.data_dir + FLAGS.data_type, FLAGS.truncate)
if FLAGS.model == "lstm":
model = FC_model
elif FLAGS.model == "convlstm":
model = CONV_model
def build_encoder(z_size, token_emb_size):
input_sequence = td.Map(td.Vector(token_emb_size))
encoder_rnn_cell = build_program_encoder(default_gru_cell(2 * z_size))
output_sequence = td.RNN(encoder_rnn_cell) >> td.GetItem(0)
mus_and_log_sigs = output_sequence >> td.GetItem(-1)
return input_sequence >> mus_and_log_sigs
halfway = int(mus_and_log_sigs.get_shape()[1].value / 2) # HACK: make this cleaner
mus = mus_and_log_sigs[:, :halfway]
log_sigs = mus_and_log_sigs[:, halfway:]
kl_loss_term = -0.5 * tf.reduce_mean(
1 + log_sigs - tf.square(mus) - tf.exp(log_sigs),
axis=1
)
return kl_loss_term
c = td.Composition()
with c.scope():
input_sequence = td.Map(td.Vector(54)).reads(c.input)
# net = build_VAE(Z_SIZE, 54)
# un_normalised_token_probs, mus_and_log_sigs = input_sequence >> build_VAE(Z_SIZE, 54)
network_output = build_VAE(Z_SIZE, 54)
network_output.reads(input_sequence)
un_normalised_token_probs = td.GetItem(0).reads(network_output)
mus_and_log_sigs = td.GetItem(1).reads(network_output)
cross_entropy_loss = td.ZipWith(td.Function(softmax_crossentropy)) >> td.Mean()
cross_entropy_loss.reads(
un_normalised_token_probs,
input_sequence
)