def get_biblio_for_id(self,
id,
provider_url_template=None,
cache_enabled=True):
self.logger.debug(u"%s /biblio_print getting biblio for %s" %
(self.provider_name, id))
if not provider_url_template:
provider_url_template = self.biblio_url_template
url = provider_url_template % id
self.logger.debug(u"%s /biblio_print _lookup_biblio_from_doi for %s" %
(self.provider_name, id))
biblio_dict = self._lookup_biblio_from_doi(id, url, cache_enabled)
self.logger.debug(u"%s /biblio_print _lookup_issn_from_doi for %s" %
(self.provider_name, id))
biblio_dict.update(self._lookup_issn_from_doi(id, url, cache_enabled))
self.logger.debug(u"%s /biblio_print free_fulltext_fragments for %s" %
(self.provider_name, id))
free_fulltext_fragments = ["/npre.", "/peerj.preprints"]
if any(doi_fragment in id for doi_fragment in free_fulltext_fragments):
biblio_dict["free_fulltext_url"] = url
elif ("issn" in biblio_dict) and provider.is_issn_in_doaj(
biblio_dict["issn"]):
biblio_dict["free_fulltext_url"] = url
return biblio_dict
def biblio(self,
aliases,
provider_url_template=None,
cache_enabled=True):
aliases_dict = provider.alias_dict_from_tuples(aliases)
if not "pmid" in aliases_dict:
return None
id = aliases_dict["pmid"][0]
self.logger.debug(u"%s getting biblio for %s" % (self.provider_name, id))
biblio_dict = {}
efetch_url = self._get_templated_url(self.biblio_url_efetch_template, id, "biblio")
efetch_page = self._get_eutils_page(efetch_url, id, cache_enabled=cache_enabled)
biblio_dict.update(self._extract_biblio_efetch(efetch_page, id))
elink_url = self._get_templated_url(self.biblio_url_elink_template, id, "biblio")
elink_page = self._get_eutils_page(elink_url, id, cache_enabled=cache_enabled)
biblio_dict.update(self._extract_biblio_elink(elink_page, id))
if "pmc" in aliases_dict:
biblio_dict["free_fulltext_url"] = self.pmc_article_template % aliases_dict["pmc"][0]
elif ("issn" in biblio_dict) and provider.is_issn_in_doaj(biblio_dict["issn"]):
biblio_dict["free_fulltext_url"] = self.aliases_pubmed_url_template %id
return biblio_dict
def get_biblio_for_id(self,
id,
provider_url_template=None,
cache_enabled=True):
self.logger.debug(u"%s /biblio_print getting biblio for %s" % (self.provider_name, id))
if not provider_url_template:
provider_url_template = self.biblio_url_template
url = provider_url_template % id
self.logger.debug(u"%s /biblio_print _lookup_biblio_from_doi for %s" % (self.provider_name, id))
biblio_dict = self._lookup_biblio_from_doi(id, url, cache_enabled)
self.logger.debug(u"%s /biblio_print _lookup_issn_from_doi for %s" % (self.provider_name, id))
biblio_dict.update(self._lookup_issn_from_doi(id, url, cache_enabled))
self.logger.debug(u"%s /biblio_print free_fulltext_fragments for %s" % (self.provider_name, id))
free_fulltext_fragments = ["/npre.", "/peerj.preprints"]
if any(doi_fragment in id for doi_fragment in free_fulltext_fragments):
biblio_dict["free_fulltext_url"] = url
elif ("issn" in biblio_dict) and provider.is_issn_in_doaj(biblio_dict["issn"]):
biblio_dict["free_fulltext_url"] = url
return biblio_dict
def biblio(self,
aliases,
provider_url_template=None,
cache_enabled=True):
biblio = {}
doc = self._get_doc(aliases)
if doc:
biblio["url"] = doc.link
biblio["abstract"] = doc.abstract
if "issn" in doc.identifiers:
biblio["issn"] = doc.identifiers["issn"]
if provider.is_issn_in_doaj(biblio["issn"]):
biblio["free_fulltext_url"] = self.get_best_url(aliases)
return biblio
def biblio(self,
aliases,
provider_url_template=None,
cache_enabled=True):
biblio = {}
doc = self._get_doc(aliases)
if doc:
biblio["url"] = doc.link
biblio["abstract"] = doc.abstract
if "issn" in doc.identifiers:
biblio["issn"] = doc.identifiers["issn"]
if provider.is_issn_in_doaj(biblio["issn"]):
biblio["free_fulltext_url"] = self.get_best_url(aliases)
return biblio
def test_is_issn_in_doaj_false(self):
response = provider.is_issn_in_doaj("invalidissn")
assert_equals(response, False)
def test_is_issn_in_doaj_true(self):
zookeys_issn = "13132989" #this one is in test setup
response = provider.is_issn_in_doaj(zookeys_issn)
assert_equals(response, True)
def test_is_issn_in_doaj_true(self):
zookeys_issn = "13132989" #this one is in test setup
response = provider.is_issn_in_doaj(zookeys_issn)
assert_equals(response, True)
def test_is_issn_in_doaj_false(self):
response = provider.is_issn_in_doaj("invalidissn")
assert_equals(response, False)
