Python get_reference_prefix Examples

Example #1

    def test_reference_prefix(self):
        spurtsv = resource_filename(__name__, 'library-spur-se.tsv')
        spur = models.load_library_tables([spurtsv])

        self.assertEqual(make_dag.get_reference_prefix(spur, '12304'),
                         'scaffold')
        self.assertEqual(make_dag.get_reference_prefix(spur, '12307'), 'chr')

Example #2

File: test_make_dag.py Project: detrout/long-rna-seq-condor

    def test_reference_prefix(self):
        spurtsv = resource_filename(__name__, "library-spur-se.tsv")
        spur = models.load_library_tables([spurtsv])

        self.assertEqual(make_dag.get_reference_prefix(spur, "12304"), "scaffold")
        self.assertEqual(make_dag.get_reference_prefix(spur, "12307"), "chr")

Example #3

    def test_reference_prefix_missing(self):
        mm10tsv = resource_filename(__name__, 'library-mm10-se.tsv')
        mm10 = models.load_library_tables([mm10tsv])

        self.assertEqual(make_dag.get_reference_prefix(mm10, '12304'), 'chr')

Example #4

File: test_make_dag.py Project: detrout/long-rna-seq-condor

    def test_reference_prefix_missing(self):
        mm10tsv = resource_filename(__name__, "library-mm10-se.tsv")
        mm10 = models.load_library_tables([mm10tsv])

        self.assertEqual(make_dag.get_reference_prefix(mm10, "12304"), "chr")