Python get_saved_variants_for_family Examples

Example #1

def saved_variants(request, project_id, family_id):

    project = get_object_or_404(Project, project_id=project_id)
    family = get_object_or_404(Family, project=project, family_id=family_id)
    if not project.can_view(request.user):
        raise PermissionDenied

    variants, couldntfind = get_saved_variants_for_family(family)

    # TODO: first this shouldnt be in API - base should never depend on api
    # TODO: also this should have better naming
    add_extra_info_to_variants_project(get_reference(),
                                       project,
                                       variants,
                                       add_family_tags=True,
                                       add_populations=True)

    return render(
        request, 'family/saved_family_variants.html', {
            'project':
            project,
            'family':
            family,
            'variants_json':
            json.dumps([v.toJSON() for v in variants]),
            'new_page_url':
            '/project/{0}/family_page/{1}'.format(
                family.seqr_family.project.guid, family.seqr_family.guid)
            if family.seqr_family else None,
        })

Example #2

File: family_views.py Project: burkesquires/xbrowse

def saved_variants(request, project_id, family_id):

    project = get_object_or_404(Project, project_id=project_id)
    family = get_object_or_404(Family, project=project, family_id=family_id)
    if not project.can_view(request.user):
        return HttpResponse('unauthorized')

    variants, couldntfind = get_saved_variants_for_family(family)

    # TODO: first this shouldnt be in API - base should never depend on api
    # TODO: also this should have better naming
    add_extra_info_to_variants_family(get_reference(), family, variants)

    return render(request, 'family/saved_family_variants.html', {
        'project': project,
        'family': family,
        'variants_json': json.dumps([v.toJSON() for v in variants]),
    })

Example #3

def saved_variants(request, project_id, family_id):

    project = get_object_or_404(Project, project_id=project_id)
    family = get_object_or_404(Family, project=project, family_id=family_id)
    if not project.can_view(request.user):
        raise PermissionDenied

    variants, couldntfind = get_saved_variants_for_family(family)

    # TODO: first this shouldnt be in API - base should never depend on api
    # TODO: also this should have better naming
    add_extra_info_to_variants_family(get_reference(), family, variants)

    return render(request, 'family/saved_family_variants.html', {
        'project': project,
        'family': family,
        'variants_json': json.dumps([v.toJSON() for v in variants]),
    })

Example #4

File: family_views.py Project: macarthur-lab/seqr

def saved_variants(request, project_id, family_id):

    project = get_object_or_404(Project, project_id=project_id)
    family = get_object_or_404(Family, project=project, family_id=family_id)
    if not project.can_view(request.user):
        raise PermissionDenied

    variants, couldntfind = get_saved_variants_for_family(family)

    # TODO: first this shouldnt be in API - base should never depend on api
    # TODO: also this should have better naming
    add_extra_info_to_variants_project(get_reference(), project, variants, add_family_tags=True, add_populations=True)

    return render(request, 'family/saved_family_variants.html', {
        'project': project,
        'family': family,
        'variants_json': json.dumps([v.toJSON() for v in variants]),
        'new_page_url': '/project/{0}/family_page/{1}'.format(
                family.seqr_family.project.guid, family.seqr_family.guid) if family.seqr_family else None,
    })