def test_read_heat_shock_10x(self):
""" Instantiate a model from heat_shock_10x.xml """
doc = StochMLDocument.fromFile("../examples/heat_shock_10x.xml")
model = doc.toModel("heat_shock_10x")
xmlstr = model.serialize()
# Run StochKit
means1,variances1,trajectories1 = stochkit(model,job_id="test_1",seed=45367)
means2,variances2,trajectories2 = stochkit("../examples/heat_shock_10x.xml",job_id="test_2",seed=45367)
isok = (means1==means2).all()
self.assertEqual(isok,True)
def test_read_schlogl(self):
""" Instantiate a model from schlogl.xml """
doc = StochMLDocument.fromFile("../examples/schlogl.xml")
model = doc.toModel("schlogl")
xmlstr = model.serialize()
# Run StochKit
means1,variances1,trajectories1 = stochkit(model,job_id="test_s_1",seed=45367,time=1.0)
means2,variances2,trajectories2 = stochkit("../examples/schlogl.xml",job_id="test_s_2",seed=45367,time=1.0)
isok = (means1==means2).all()
self.assertEqual(isok,True)
def test_read_heat_shock_10x(self):
""" Instantiate a model from heat_shock_10x.xml """
doc = StochMLDocument.fromFile("../examples/heat_shock_10x.xml")
model = doc.toModel("heat_shock_10x")
xmlstr = model.serialize()
# Run StochKit
means1, variances1, trajectories1 = stochkit(model,
job_id="test_1",
seed=45367)
means2, variances2, trajectories2 = stochkit(
"../examples/heat_shock_10x.xml", job_id="test_2", seed=45367)
isok = (means1 == means2).all()
self.assertEqual(isok, True)
def test_read_dimer_decay(self):
""" Instantiate a model from dimer_decay.xml """
doc = StochMLDocument.fromFile("../examples/dimer_decay.xml")
model = doc.toModel("dimer_decay")
xmlstr = model.serialize()
# Run StochKit with the same seed for both the
# original model (diectly using the XML file) and using the file
# serialized from the imported model instance. They should result in
# the same output even if the format of the XML file is not identical.
means1,variances1,trajectories1 = stochkit(model,job_id="test_dd_1",seed=45367)
means2,variances2,trajectories2 = stochkit("../examples/dimer_decay.xml",job_id="test_dd_2",seed=45367)
isok = (means1==means2).all()
self.assertEqual(isok,True)
def test_read_schlogl(self):
""" Instantiate a model from schlogl.xml """
doc = StochMLDocument.fromFile("../examples/schlogl.xml")
model = doc.toModel("schlogl")
xmlstr = model.serialize()
# Run StochKit
means1, variances1, trajectories1 = stochkit(model,
job_id="test_s_1",
seed=45367,
time=1.0)
means2, variances2, trajectories2 = stochkit("../examples/schlogl.xml",
job_id="test_s_2",
seed=45367,
time=1.0)
isok = (means1 == means2).all()
self.assertEqual(isok, True)
def test_read_dimer_decay(self):
""" Instantiate a model from dimer_decay.xml """
doc = StochMLDocument.fromFile("../examples/dimer_decay.xml")
model = doc.toModel("dimer_decay")
xmlstr = model.serialize()
# Run StochKit with the same seed for both the
# original model (diectly using the XML file) and using the file
# serialized from the imported model instance. They should result in
# the same output even if the format of the XML file is not identical.
means1, variances1, trajectories1 = stochkit(model,
job_id="test_dd_1",
seed=45367)
means2, variances2, trajectories2 = stochkit(
"../examples/dimer_decay.xml", job_id="test_dd_2", seed=45367)
isok = (means1 == means2).all()
self.assertEqual(isok, True)