# -*- coding: utf-8 -*-
"""
Created on Fri Apr 23 23:59:59 2021
@author: ZR
"""
from My_Wheels.Standard_Aligner import Standard_Aligner
day_folder = r'K:\Test_Data\2P\210423_L76_2P'
SA = Standard_Aligner(day_folder, list(range(1,17)),final_base = '1-001')
SA.One_Key_Aligner()
#%% Then Stim_Frame_Align
from My_Wheels.Stim_Frame_Align import One_Key_Stim_Align
One_Key_Stim_Align(r'K:\Test_Data\2P\210423_L76_2P\210423_L76_2P_stimuli')
#%% Then get basic stim maps.
from My_Wheels.Standard_Parameters.Sub_Graph_Dics import Sub_Dic_Generator
from My_Wheels.Standard_Stim_Processor import One_Key_Frame_Graphs
OD_Para = Sub_Dic_Generator('OD_2P')
One_Key_Frame_Graphs(r'K:\Test_Data\2P\210423_L76_2P\1-009', OD_Para)
G16_Para = Sub_Dic_Generator('G16_2P')
One_Key_Frame_Graphs(r'K:\Test_Data\2P\210423_L76_2P\1-014', G16_Para)
Hue_Para = Sub_Dic_Generator('HueNOrien4',para = {'Hue':['Red0.6',
'Red0.5',
'Red0.4',
'Red0.3',
'Red0.2',
'Yellow',
'Green',
'Cyan',
# -*- coding: utf-8 -*-
"""
Created on Tue Jun 29 22:02:51 2021
@author: ZR
"""
from My_Wheels.Standard_Aligner import Standard_Aligner
Sa = Standard_Aligner(r'K:\Test_Data\2P\210629_L76_2P', list(range(1, 8)))
Sa.One_Key_Aligner()
from My_Wheels.Stim_Frame_Align import One_Key_Stim_Align
One_Key_Stim_Align(r'K:\Test_Data\2P\210629_L76_2P\210629_L76_2P_stimuli')
from My_Wheels.Standard_Parameters.Sub_Graph_Dics import Sub_Dic_Generator
from My_Wheels.Standard_Stim_Processor import One_Key_Frame_Graphs
G8_Para = Sub_Dic_Generator('G8+90')
One_Key_Frame_Graphs(r'K:\Test_Data\2P\210629_L76_2P\1-004', G8_Para)
OD_Para = Sub_Dic_Generator('OD_2P')
One_Key_Frame_Graphs(r'K:\Test_Data\2P\210629_L76_2P\1-006', OD_Para)
RG_Para = Sub_Dic_Generator('RGLum4')
One_Key_Frame_Graphs(r'K:\Test_Data\2P\210629_L76_2P\1-007', RG_Para)
from My_Wheels.Cell_Find_From_Graph import Cell_Find_From_Mannual
Cell_Find_From_Mannual(
r'K:\Test_Data\2P\210629_L76_2P\_Manual_Cell\Cell_Mask.png',
average_graph_path=
r'K:\Test_Data\2P\210629_L76_2P\_Manual_Cell\Global_Average.tif',
boulder=5)
from My_Wheels.Standard_Cell_Generator import Standard_Cell_Generator
# -*- coding: utf-8 -*-
"""
Created on Fri Apr 16 15:11:48 2021
@author: ZR
"""
from My_Wheels.Standard_Aligner import Standard_Aligner
day_folder = r'K:\Test_Data\2P\210401_L76_2P'
runlists = list(range(1,14))
SA = Standard_Aligner(day_folder,runlists,final_base = '1-011')
SA.One_Key_Aligner()
from My_Wheels.Cell_Find_From_Graph import Cell_Find_From_Mannual
cell_dic = Cell_Find_From_Mannual(r'K:\Test_Data\2P\210401_L76_2P\_Manual_Cell\Cell_Mask.png',
r'K:\Test_Data\2P\210401_L76_2P\_Manual_Cell\Global_Average.tif',10)
# Then get cell data
from My_Wheels.Standard_Cell_Generator import Standard_Cell_Generator
SCG = Standard_Cell_Generator('L76', '210401', r'K:\Test_Data\2P\210401_L76_2P', list(range(1,14)))
SCG.Generate_Cells()
# -*- coding: utf-8 -*-
"""
Created on Wed May 5 10:15:48 2021
@author: ZR
"""
from My_Wheels.Standard_Aligner import Standard_Aligner
SA = Standard_Aligner(r'K:\Test_Data\2P\210504_L76_2P', list(range(1,17)),final_base='1-001')
SA.One_Key_Aligner()
from My_Wheels.Stim_Frame_Align import One_Key_Stim_Align
One_Key_Stim_Align(r'K:\Test_Data\2P\210504_L76_2P\210504_L76_stimuli')
from My_Wheels.Standard_Parameters.Sub_Graph_Dics import Sub_Dic_Generator
from My_Wheels.Standard_Stim_Processor import One_Key_Frame_Graphs
OD_Para = Sub_Dic_Generator('OD_2P')
One_Key_Frame_Graphs(r'K:\Test_Data\2P\210504_L76_2P\1-010', OD_Para)
G16_Para = Sub_Dic_Generator('G16_2P')
One_Key_Frame_Graphs(r'K:\Test_Data\2P\210504_L76_2P\1-013', G16_Para)
S3D8_Para = Sub_Dic_Generator('Shape3Dir8')
One_Key_Frame_Graphs(r'K:\Test_Data\2P\210504_L76_2P\1-015', S3D8_Para)
H7O4_Para = Sub_Dic_Generator('HueNOrien4',para = {'Hue':['Red','Yellow','Green','Cyan','Blue','Purple','White']})
One_Key_Frame_Graphs(r'K:\Test_Data\2P\210504_L76_2P\1-016', H7O4_Para)
#%% Get cell file then.
from My_Wheels.Cell_Find_From_Graph import Cell_Find_From_Mannual
cell_dic = Cell_Find_From_Mannual(r'K:\Test_Data\2P\210504_L76_2P\_Manual_Cell\Cell_Mask.png',average_graph_path = r'K:\Test_Data\2P\210504_L76_2P\_Manual_Cell\Global_Average.tif',boulder = 5)
from My_Wheels.Standard_Cell_Generator import Standard_Cell_Generator
SCG = Standard_Cell_Generator('L76', '210504', r'K:\Test_Data\2P\210504_L76_2P', list(range(1,17)))
SCG.Generate_Cells()