def test_createHtmlPage(self):
strDimpleOutput = os.path.join(self.strDataPath, "dimple",
"Dimplev1_0_dataOutput.xml")
strResultDimple = self.readAndParseFile(strDimpleOutput)
xsDataResultDimple = XSDataResultDimple.parseString(strResultDimple)
strPdfPath = os.path.join(
xsDataResultDimple.resultsDirectory.path.value, "DIMPLE.pdf")
edPlugin = self.getPlugin()
strPyarchRootDir = tempfile.mkdtemp(prefix="html_",
dir=os.path.join(
self.strDataPath, "dimple"))
strPrefix = "xtal5w1_1"
strProposal = "mx415"
strSessionDate = "2015-02-23"
strBeamline = "id29"
strResultsDirectory = strPyarchRootDir
listPath = edPlugin.copyResults(strPrefix, strPyarchRootDir,
xsDataResultDimple, strPdfPath)
listPathHtml = edPlugin.createHtmlPage(strPrefix, xsDataResultDimple,
strResultsDirectory,
strPyarchRootDir, strProposal,
strSessionDate, strBeamline)
for pathHtml in listPathHtml:
EDAssert.equal(True, os.path.exists(pathHtml),
"HTML page generated")
shutil.rmtree(strPyarchRootDir)
def test_createHtmlPage(self):
strDimpleOutput = os.path.join(self.strDataPath, "dimple", "Dimplev1_0_dataOutput.xml")
strResultDimple = self.readAndParseFile(strDimpleOutput)
xsDataResultDimple = XSDataResultDimple.parseString(strResultDimple)
strPdfPath = os.path.join(xsDataResultDimple.resultsDirectory.path.value, "DIMPLE.pdf")
edPlugin = self.getPlugin()
strPyarchRootDir = tempfile.mkdtemp(prefix="html_", dir=os.path.join(self.strDataPath, "dimple"))
strPrefix = "xtal5w1_1"
strProposal = "mx415"
strSessionDate = "2015-02-23"
strBeamline = "id29"
listPath = edPlugin.copyResults(strPrefix, strPyarchRootDir, xsDataResultDimple, strPdfPath)
listPathHtml = edPlugin.createHtmlPage(strPrefix, xsDataResultDimple, strPyarchRootDir, strProposal, strSessionDate, strBeamline)
print listPathHtml
for pathHtml in listPathHtml:
EDAssert.equal(True, os.path.exists(pathHtml), "HTML page generated")
shutil.rmtree(strPyarchRootDir)
def test_copyResults(self):
strDimpleOutput = os.path.join(self.strDataPath, "dimple", "Dimplev1_0_dataOutput.xml")
strResultDimple = self.readAndParseFile(strDimpleOutput)
xsDataResultDimple = XSDataResultDimple.parseString(strResultDimple)
edPlugin = self.getPlugin()
strResultDir = tempfile.mkdtemp(prefix="EDTestCasePluginUnitControlRunDimplev1_0_")
strPrefix = "xtal5w1_1"
strPdfPath = os.path.join(xsDataResultDimple.resultsDirectory.path.value, "DIMPLE.pdf")
listPath = edPlugin.copyResults(strPrefix, strResultDir, xsDataResultDimple, strPdfPath)
EDAssert.equal(True, os.path.exists(os.path.join(strResultDir, "ep_xtal5w1_1_blob1v1_dimple.png")), "blob1v1.png")
EDAssert.equal(True, os.path.exists(os.path.join(strResultDir, "ep_xtal5w1_1_blob1v2_dimple.png")), "blob1v2.png")
EDAssert.equal(True, os.path.exists(os.path.join(strResultDir, "ep_xtal5w1_1_blob1v3_dimple.png")), "blob1v3.png")
EDAssert.equal(True, os.path.exists(os.path.join(strResultDir, "ep_xtal5w1_1_blob2v1_dimple.png")), "blob2v1.png")
EDAssert.equal(True, os.path.exists(os.path.join(strResultDir, "ep_xtal5w1_1_blob2v2_dimple.png")), "blob2v2.png")
EDAssert.equal(True, os.path.exists(os.path.join(strResultDir, "ep_xtal5w1_1_blob2v3_dimple.png")), "blob2v3.png")
EDAssert.equal(True, os.path.exists(os.path.join(strResultDir, "ep_xtal5w1_1_dimple.log")), "dimple.log")
EDAssert.equal(True, os.path.exists(os.path.join(strResultDir, "ep_xtal5w1_1_dimple.mtz")), "dimple.mtz")
EDAssert.equal(True, os.path.exists(os.path.join(strResultDir, "ep_xtal5w1_1_dimple.pdb")), "dimple.pdb")
EDAssert.equal(True, os.path.exists(os.path.join(strResultDir, "ep_xtal5w1_1_findblobs_dimple.log")), "findblobs.log")
EDAssert.equal(True, os.path.exists(os.path.join(strResultDir, "ep_xtal5w1_1_refmac5restr_dimple.log")), "refmac5restr.log")
EDAssert.equal(True, os.path.exists(os.path.join(strResultDir, "ep_xtal5w1_1_results_dimple.pdf")), "dimple.pdf")
shutil.rmtree(strResultDir)
def __init__(self):
EDPluginExecProcessScript.__init__(self)
self.setXSDataInputClass(XSDataInputDimple)
self.setDataOutput(XSDataResultDimple())
self.strDimpleDir = None
def test_copyResults(self):
strDimpleOutput = os.path.join(self.strDataPath, "dimple",
"Dimplev1_0_dataOutput.xml")
strResultDimple = self.readAndParseFile(strDimpleOutput)
xsDataResultDimple = XSDataResultDimple.parseString(strResultDimple)
edPlugin = self.getPlugin()
strResultDir = tempfile.mkdtemp(
prefix="EDTestCasePluginUnitControlRunDimplev1_0_")
strPrefix = "xtal5w1_1"
strPdfPath = os.path.join(
xsDataResultDimple.resultsDirectory.path.value, "DIMPLE.pdf")
listPath = edPlugin.copyResults(strPrefix, strResultDir,
xsDataResultDimple, strPdfPath)
EDAssert.equal(
True,
os.path.exists(
os.path.join(strResultDir, "ep_xtal5w1_1_blob1v1_dimple.png")),
"blob1v1.png")
EDAssert.equal(
True,
os.path.exists(
os.path.join(strResultDir, "ep_xtal5w1_1_blob1v2_dimple.png")),
"blob1v2.png")
EDAssert.equal(
True,
os.path.exists(
os.path.join(strResultDir, "ep_xtal5w1_1_blob1v3_dimple.png")),
"blob1v3.png")
EDAssert.equal(
True,
os.path.exists(
os.path.join(strResultDir, "ep_xtal5w1_1_blob2v1_dimple.png")),
"blob2v1.png")
EDAssert.equal(
True,
os.path.exists(
os.path.join(strResultDir, "ep_xtal5w1_1_blob2v2_dimple.png")),
"blob2v2.png")
EDAssert.equal(
True,
os.path.exists(
os.path.join(strResultDir, "ep_xtal5w1_1_blob2v3_dimple.png")),
"blob2v3.png")
EDAssert.equal(
True,
os.path.exists(
os.path.join(strResultDir, "ep_xtal5w1_1_dimple.log")),
"dimple.log")
EDAssert.equal(
True,
os.path.exists(
os.path.join(strResultDir, "ep_xtal5w1_1_dimple.mtz")),
"dimple.mtz")
EDAssert.equal(
True,
os.path.exists(
os.path.join(strResultDir, "ep_xtal5w1_1_dimple.pdb")),
"dimple.pdb")
EDAssert.equal(
True,
os.path.exists(
os.path.join(strResultDir,
"ep_xtal5w1_1_findblobs_dimple.log")),
"findblobs.log")
EDAssert.equal(
True,
os.path.exists(
os.path.join(strResultDir,
"ep_xtal5w1_1_refmac5restr_dimple.log")),
"refmac5restr.log")
EDAssert.equal(
True,
os.path.exists(
os.path.join(strResultDir, "ep_xtal5w1_1_results_dimple.pdf")),
"dimple.pdf")
shutil.rmtree(strResultDir)