def __init__(self, main, parent=None):
BaseViewer.__init__(self, main, parent)
self.title = "Skeleton"
self.shortTitle = "SKE"
self.app.themes.addDefaultRGB("Skeleton:Model:0", 180, 0, 0, 255)
self.app.themes.addDefaultRGB("Skeleton:Model:1", 200, 150, 0, 255)
self.app.themes.addDefaultRGB("Skeleton:Model:2", 0, 0, 0, 255)
self.app.themes.addDefaultRGB("Skeleton:BoundingBox", 255, 255, 255,
255)
self.isClosedMesh = False
self.twoWayLighting = True
self.lineThickness = 3
self.renderer = MeshRenderer()
self.renderer.setLineThickness(self.lineThickness)
self.createUI()
self.app.viewers["skeleton"] = self
self.volumeViewer = self.app.viewers["volume"]
self.initVisualizationOptions(ModelVisualizationForm(self.app, self))
self.visualizationOptions.ui.spinBoxThickness.setValue(
self.lineThickness)
self.visualizationOptions.ui.spinBoxThickness.setVisible(True)
self.visualizationOptions.ui.labelThickness.setVisible(True)
self.model2Visible = True
self.model3Visible = True
self.visualizationOptions.ui.checkBoxModelVisible.setText(
"Show curves colored:")
self.visualizationOptions.ui.checkBoxModel2Visible.setText(
"Show surfaces colored:")
self.visualizationOptions.ui.checkBoxModel2Visible.setVisible(True)
self.visualizationOptions.ui.pushButtonModel2Color.setVisible(True)
self.visualizationOptions.ui.checkBoxModel3Visible.setText(
"Show surface borders:")
self.visualizationOptions.ui.checkBoxModel3Visible.setVisible(True)
self.visualizationOptions.ui.pushButtonModel3Color.setVisible(True)
def __init__(self, main, parent=None):
BaseViewer.__init__(self, main, parent)
self.title = "Secondary Structure Element"
self.shortTitle = "SSE"
self.app.themes.addDefaultRGB("Secondary Structure Element:Model:0", 0,
180, 0, 255)
self.app.themes.addDefaultRGB("Secondary Structure Element:Model:1",
120, 185, 255, 255)
self.app.themes.addDefaultRGB("Secondary Structure Element:Model:2",
120, 185, 255, 255)
self.app.themes.addDefaultRGB(
"Secondary Structure Element:BoundingBox", 255, 255, 255, 255)
self.isClosedMesh = False
self.helixFileName = ""
self.sheetFileName = ""
self.currentMatch = None
self.showBox = False
self.helixLoaded = False
self.sheetLoaded = False
self.renderer = SSERenderer()
self.correspondenceEngine = SSECorrespondenceEngine()
self.createUI()
self.selectEnabled = True
self.app.viewers["sse"] = self
self.model2Visible = True
self.model3Visible = False
self.initVisualizationOptions(ModelVisualizationForm(self.app, self))
self.visualizationOptions.ui.checkBoxModelVisible.setText(
"Show helices colored:")
self.visualizationOptions.ui.checkBoxModel2Visible.setText(
"Show sheets colored:")
self.visualizationOptions.ui.checkBoxModel2Visible.setVisible(True)
self.visualizationOptions.ui.pushButtonModel2Color.setVisible(True)
self.visualizationOptions.ui.checkBoxModel3Visible.setText(
"Show skeleton sheets colored:")
self.visualizationOptions.ui.checkBoxModel3Visible.setVisible(False)
self.visualizationOptions.ui.pushButtonModel3Color.setVisible(False)
self.connect(
self,
QtCore.SIGNAL(
'elementSelected (int, int, int, int, int, int, QMouseEvent)'),
self.updateCurrentMatch)
self.connect(self.app.viewers["volume"],
QtCore.SIGNAL('modelLoaded()'),
self.updateActionsAndMenus)
self.connect(self.app.viewers["volume"],
QtCore.SIGNAL('modelUnloaded()'),
self.updateActionsAndMenus)
self.connect(self, QtCore.SIGNAL('modelLoaded()'),
self.updateActionsAndMenus)
self.connect(self, QtCore.SIGNAL('modelUnloaded()'),
self.updateActionsAndMenus)
self.selectedObjects = []
self.correspondences = []
def __init__(self, main, parent=None):
BaseViewer.__init__(self, main, parent)
self.title = "Volume"
self.shortTitle = "VOL"
self.app.themes.addDefaultRGB("Volume:Model:0", 180, 180, 180, 150) #rgba color: default alpha used to be 255 for opaque
self.app.themes.addDefaultRGB("Volume:Model:1", 180, 180, 180, 150)
self.app.themes.addDefaultRGB("Volume:Model:2", 180, 180, 180, 150)
self.app.themes.addDefaultRGB("Volume:BoundingBox", 255, 255, 255, 255)
self.renderer = VolumeRenderer()
self.loaded = False
self.createUI()
self.app.viewers["volume"] = self
self.initVisualizationOptions(ModelVisualizationForm(self.app, self))
def __init__(self, main, parent=None):
BaseViewer.__init__(self, main, parent)
self.title = "C-Alpha"
self.shortTitle = "CAL"
self.app.themes.addDefaultRGB("C-Alpha:Atom", 170, 170, 0, 255)
self.app.themes.addDefaultRGB("C-Alpha:Bond", 120, 120, 170, 255)
self.app.themes.addDefaultRGB("C-Alpha:Helix", 0, 255, 0, 255)
self.app.themes.addDefaultRGB("C-Alpha:Strand", 128, 255, 255, 255)
self.app.themes.addDefaultRGB("C-Alpha:Loop", 255, 128, 0, 255)
self.app.themes.addDefaultRGB("C-Alpha:Carbon", 200, 200, 200, 255)
self.app.themes.addDefaultRGB("C-Alpha:Nitrogen", 0, 0, 255, 255)
self.app.themes.addDefaultRGB("C-Alpha:Oxygen", 255, 0, 0, 255)
self.app.themes.addDefaultRGB("C-Alpha:Sulphur", 255, 255, 0, 255)
self.app.themes.addDefaultRGB("C-Alpha:BoundingBox", 255, 255, 255,
255)
self.isClosedMesh = False
self.centerOnRMB = True
self.selectEnabled = True
self.renderer = CAlphaRenderer()
self.displayStyle = self.DisplayStyleBackbone
self.renderer.setDisplayStyle(self.displayStyle)
self.main_chain = Chain('', self.app)
self.structPred = None
self.createUI()
self.app.viewers["calpha"] = self
self.atomsVisible = True
self.bondsVisible = True
self.helicesVisible = True
self.strandsVisible = True
self.loopsVisible = True
#self.interpSegments = 10 # the number of segments interpolated per calpha atom when rendering ribbon diagrams
#self.ribbonSlices = 10 # the number of slices used to render each segment of a ribbon diagram
self.initVisualizationOptions(AtomVisualizationForm(self.app, self))
self.loadedChains = []
self.ribbonMouseMapping = {}
self.ribbonMouseMapping[0] = {}
self.ribbonMouseMapping[1] = {}
self.ribbonMouseMapping[2] = {}
#self.connect(self, QtCore.SIGNAL("elementSelected (int, int, int, int, int, int, QMouseEvent)"), self.centerOnSelectedAtoms)
self.connect(
self,
QtCore.SIGNAL(
"elementClicked (int, int, int, int, int, int, QMouseEvent)"),
self.processElementClick)