def format(objs, **kwargs):
template_filename = kwargs['template']
use_private = kwargs.get('private', True)
if not template_filename:
msg = _('Please select a template.')
utils.message_dialog(msg, gtk.MESSAGE_WARNING)
return False
template = Template(filename=template_filename,
input_encoding='utf-8',
output_encoding='utf-8')
session = db.Session()
values = map(session.merge, objs)
report = template.render(values=values)
session.close()
# assume the template is the same file type as the output file
head, ext = os.path.splitext(template_filename)
fd, filename = tempfile.mkstemp(suffix=ext)
os.write(fd, report)
os.close(fd)
try:
desktop.open(filename)
except OSError:
utils.message_dialog(
_('Could not open the report with the '
'default program. You can open the '
'file manually at %s') % filename)
return report
def format(objs, **kwargs):
template_filename = kwargs["template"]
use_private = kwargs.get("private", True)
if not template_filename:
msg = _("Please select a template.")
utils.message_dialog(msg, gtk.MESSAGE_WARNING)
return False
template = Template(filename=template_filename, input_encoding="utf-8", output_encoding="utf-8")
session = db.Session()
values = map(session.merge, objs)
report = template.render(values=values)
session.close()
# assume the template is the same file type as the output file
head, ext = os.path.splitext(template_filename)
fd, filename = tempfile.mkstemp(suffix=ext)
os.write(fd, report)
os.close(fd)
try:
desktop.open(filename)
except OSError:
utils.message_dialog(
_("Could not open the report with the " "default program. You can open the " "file manually at %s")
% filename
)
return report
def on_help_menu_about(self, widget, data=None):
about = gtk.AboutDialog()
about.set_name('Bauble')
about.set_version(bauble.version)
gtk.about_dialog_set_url_hook(lambda d, l: desktop.open(l, dialog_on_error=True))
about.set_website(_('http://bauble.io'))
f = os.path.join(paths.lib_dir(), 'images', 'icon.svg')
pixbuf = gtk.gdk.pixbuf_new_from_file(f)
about.set_logo(pixbuf)
about.set_copyright(_(u'Copyright \u00A9 Belize Botanic Gardens'))
about.run()
about.destroy()
def on_help_menu_about(self, widget, data=None):
about = gtk.AboutDialog()
about.set_name("Bauble")
about.set_version(bauble.version)
gtk.about_dialog_set_url_hook(lambda d, l: desktop.open(l, dialog_on_error=True))
about.set_website(_("http://bauble.wikidot.com"))
f = os.path.join(paths.lib_dir(), "images", "icon.svg")
pixbuf = gtk.gdk.pixbuf_new_from_file(f)
about.set_logo(pixbuf)
about.set_copyright(_(u"Copyright © by its contributors."))
import codecs
with codecs.open(os.path.join(paths.installation_dir(), "share", "LICENSE.bauble")) as f:
license = f.read()
about.set_license(license) # not translated
about.run()
about.destroy()
def on_help_menu_about(self, widget, data=None):
about = gtk.AboutDialog()
about.set_name('Ghini')
about.set_version(bauble.version)
gtk.about_dialog_set_url_hook(lambda d, l:
desktop.open(l, dialog_on_error=True))
about.set_website(_('http://ghini.github.io'))
f = os.path.join(paths.lib_dir(), 'images', 'icon.svg')
pixbuf = gtk.gdk.pixbuf_new_from_file(f)
about.set_logo(pixbuf)
about.set_copyright(_(u'Copyright © by its contributors.'))
import codecs
with codecs.open(os.path.join(paths.installation_dir(), 'share',
'LICENSE.ghini')) as f:
license = f.read()
about.set_license(license) # not translated
about.run()
about.destroy()
def on_help_menu_logfile(self, widget, data=None):
filename = os.path.join(paths.user_dir(), 'bauble.log')
desktop.open(filename, dialog_on_error=True)
def on_help_menu_web_wiki(self, widget, data=None):
desktop.open('http://github.com/Bauble/bauble.classic/wiki',
dialog_on_error=True)
def on_help_menu_contents(self, widget, data=None):
desktop.open('http://bauble.readthedocs.org/en/latest/',
dialog_on_error=True)
def on_help_menu_bug(self, widget, data=None):
desktop.open('https://github.com/Bauble/bauble.classic/issues/new',
dialog_on_error=True)
def on_help_menu_web_forum(self, widget, data=None):
desktop.open('https://groups.google.com/forum/#!forum/bauble',
dialog_on_error=True)
def _open_link(func, data=None):
desktop.open(data)
def on_help_menu_contents(self, widget, data=None):
desktop.open('http://bauble.readthedocs.org/en/latest/',
dialog_on_error=True)
def on_help_menu_logfile(self, widget, data=None):
filename = os.path.join(paths.user_dir(), 'bauble.log')
desktop.open(filename, dialog_on_error=True)
def on_help_menu_web_forum(self, widget, data=None):
desktop.open('https://groups.google.com/forum/#!forum/bauble',
dialog_on_error=True)
def on_tnrs_browse_button_clicked(self, *args):
from bauble.utils import desktop
desktop.open('http://tnrs.iplantcollaborative.org/TNRSapp.html')
def on_help_menu_web(self, widget, data=None):
desktop.open('http://bauble.belizebotanic.org',
dialog_on_error=True)
def on_inst_register_clicked(self, *args, **kwargs):
from bauble.utils import desktop
desktop.open('mailto:[email protected]')
def format(objs, **kwargs):
# debug('format(%s)' % kwargs)
stylesheet = kwargs['stylesheet']
authors = kwargs['authors']
renderer = kwargs['renderer']
source_type = kwargs['source_type']
use_private = kwargs['private']
error_msg = None
if not stylesheet:
error_msg = _('Please select a stylesheet.')
elif not renderer:
error_msg = _('Please select a a renderer')
if error_msg is not None:
utils.message_dialog(error_msg, gtk.MESSAGE_WARNING)
return False
fo_cmd = renderers_map[renderer]
exe = fo_cmd.split(' ')[0]
if not on_path(exe):
utils.message_dialog(_('Could not find the command "%(exe)s" to '
'start the %(renderer_name)s '
'renderer.') %
({'exe': exe, 'renderer_name': renderer}),
gtk.MESSAGE_ERROR)
return False
session = db.Session()
# convert objects to ABCDAdapters depending on source type for
# passing to create_abcd
adapted = []
if source_type == plant_source_type:
plants = sorted(get_plants_pertinent_to(objs, session=session),
key=utils.natsort_key)
if len(plants) == 0:
utils.message_dialog(_('There are no plants in the search '
'results. Please try another search.'))
return False
for p in plants:
if use_private:
adapted.append(PlantABCDAdapter(p, for_labels=True))
elif not p.accession.private:
adapted.append(PlantABCDAdapter(p, for_labels=True))
elif source_type == species_source_type:
species = sorted(get_species_pertinent_to(objs, session=session),
key=utils.natsort_key)
if len(species) == 0:
utils.message_dialog(_('There are no species in the search '
'results. Please try another search.'))
return False
for s in species:
adapted.append(SpeciesABCDAdapter(s, for_labels=True))
elif source_type == accession_source_type:
accessions = sorted(get_accessions_pertinent_to(objs,
session=session),
key=utils.natsort_key)
if len(accessions) == 0:
utils.message_dialog(_('There are no accessions in the search '
'results. Please try another search.'))
return False
for a in accessions:
if use_private:
adapted.append(AccessionABCDAdapter(a, for_labels=True))
elif not a.private:
adapted.append(AccessionABCDAdapter(a, for_labels=True))
else:
raise NotImplementedError('unknown source type')
if len(adapted) == 0:
# nothing adapted....possibly everything was private
# TODO: if everything was private and that is really why we got
# here then it is probably better to show a dialog with a message
# and raise and exception which appears as an error
raise Exception('No objects could be adapted to ABCD units.')
abcd_data = create_abcd(adapted, authors=authors, validate=False)
session.close()
# logger.debug(etree.dump(abcd_data.getroot()))
# create xsl fo file
dummy, fo_filename = tempfile.mkstemp()
style_etree = etree.parse(stylesheet)
transform = etree.XSLT(style_etree)
result = transform(abcd_data)
fo_outfile = open(fo_filename, 'w')
fo_outfile.write(str(result))
fo_outfile.close()
dummy, filename = tempfile.mkstemp()
filename = '%s.pdf' % filename
# TODO: checkout pyexpect for spawning processes
# run the report to produce the pdf file, the command has to be
# on the path for this to work
fo_cmd = fo_cmd % ({'fo_filename': fo_filename,
'out_filename': filename})
# print fo_cmd
# debug(fo_cmd)
# TODO: use popen to get output
os.system(fo_cmd)
# print filename
if not os.path.exists(filename):
utils.message_dialog(_('Error creating the PDF file. Please '
'ensure that your PDF formatter is '
'properly installed.'), gtk.MESSAGE_ERROR)
return False
else:
try:
desktop.open(filename)
except OSError:
utils.message_dialog(_('Could not open the report with the '
'default program. You can open the '
'file manually at %s') % filename)
return True
def format(objs, **kwargs):
# debug('format(%s)' % kwargs)
stylesheet = kwargs['stylesheet']
authors = kwargs['authors']
renderer = kwargs['renderer']
source_type = kwargs['source_type']
use_private = kwargs['private']
error_msg = None
if not stylesheet:
error_msg = _('Please select a stylesheet.')
elif not renderer:
error_msg = _('Please select a a renderer')
if error_msg is not None:
utils.message_dialog(error_msg, gtk.MESSAGE_WARNING)
return False
fo_cmd = renderers_map[renderer]
exe = fo_cmd.split(' ')[0]
if not on_path(exe):
utils.message_dialog(
_('Could not find the command "%(exe)s" to '
'start the %(renderer_name)s '
'renderer.') % ({
'exe': exe,
'renderer_name': renderer
}), gtk.MESSAGE_ERROR)
return False
session = db.Session()
# convert objects to ABCDAdapters depending on source type for
# passing to create_abcd
adapted = []
if source_type == plant_source_type:
plants = sorted(get_plants_pertinent_to(objs, session=session),
key=utils.natsort_key)
if len(plants) == 0:
utils.message_dialog(
_('There are no plants in the search '
'results. Please try another search.'))
return False
for p in plants:
if use_private:
adapted.append(PlantABCDAdapter(p, for_labels=True))
elif not p.accession.private:
adapted.append(PlantABCDAdapter(p, for_labels=True))
elif source_type == species_source_type:
species = sorted(get_species_pertinent_to(objs, session=session),
key=utils.natsort_key)
if len(species) == 0:
utils.message_dialog(
_('There are no species in the search '
'results. Please try another search.'))
return False
for s in species:
adapted.append(SpeciesABCDAdapter(s, for_labels=True))
elif source_type == accession_source_type:
accessions = sorted(get_accessions_pertinent_to(objs,
session=session),
key=utils.natsort_key)
if len(accessions) == 0:
utils.message_dialog(
_('There are no accessions in the search '
'results. Please try another search.'))
return False
for a in accessions:
if use_private:
adapted.append(AccessionABCDAdapter(a, for_labels=True))
elif not a.private:
adapted.append(AccessionABCDAdapter(a, for_labels=True))
else:
raise NotImplementedError('unknown source type')
if len(adapted) == 0:
# nothing adapted....possibly everything was private
# TODO: if everything was private and that is really why we got
# here then it is probably better to show a dialog with a message
# and raise and exception which appears as an error
raise Exception('No objects could be adapted to ABCD units.')
abcd_data = create_abcd(adapted, authors=authors, validate=False)
session.close()
logger.debug(etree.dump(abcd_data.getroot()))
# create xsl fo file
dummy, fo_filename = tempfile.mkstemp()
style_etree = etree.parse(stylesheet)
transform = etree.XSLT(style_etree)
result = transform(abcd_data)
fo_outfile = open(fo_filename, 'w')
fo_outfile.write(str(result))
fo_outfile.close()
dummy, filename = tempfile.mkstemp()
filename = '%s.pdf' % filename
# TODO: checkout pyexpect for spawning processes
# run the report to produce the pdf file, the command has to be
# on the path for this to work
fo_cmd = fo_cmd % ({
'fo_filename': fo_filename,
'out_filename': filename
})
logger.debug(fo_cmd)
# TODO: use popen to get output
os.system(fo_cmd)
logger.debug(filename)
if not os.path.exists(filename):
utils.message_dialog(
_('Error creating the PDF file. Please '
'ensure that your PDF formatter is '
'properly installed.'), gtk.MESSAGE_ERROR)
return False
else:
try:
desktop.open(filename)
except OSError:
utils.message_dialog(
_('Could not open the report with the '
'default program. You can open the '
'file manually at %s') % filename)
return True
def on_help_menu_bug(self, widget, data=None):
desktop.open('https://github.com/Ghini/ghini.desktop/issues/new',
dialog_on_error=True)
def on_help_menu_bug(self, widget, data=None):
desktop.open('https://github.com/Bauble/bauble.classic/issues/new',
dialog_on_error=True)
def on_help_menu_web_wiki(self, widget, data=None):
desktop.open('http://github.com/Ghini/ghini.desktop/wiki',
dialog_on_error=True)
def on_help_menu_web_wiki(self, widget, data=None):
desktop.open('http://github.com/Bauble/bauble.classic/wiki',
dialog_on_error=True)
def _open_link(func, data=None):
desktop.open(data)
def on_tnrs_browse_button_clicked(self, *args):
from bauble.utils import desktop
desktop.open("http://tnrs.iplantcollaborative.org/TNRSapp.html")
def on_help_menu_web_devel(self, widget, data=None):
desktop.open("http://github.com/Bauble/bauble.classic/", dialog_on_error=True)
