def main(args):
if not args.narrative_ref:
print(
"Must include a Narrative object reference in the format XXX/YYY (these are the numbers in the usual Narrative URL)"
)
return 1
if not args.outfile:
print("Must include an output file for exporting the Narrative!")
return 1
outfile = args.outfile
if not outfile.lower().endswith(".html"):
outfile = outfile + ".html"
exporter = NarrativeExporter()
try:
exporter.export_narrative(args.narrative_ref, outfile)
except PermissionsError:
print("The Narrative at reference " + args.narrative_ref +
" does not appear to be public!")
return 1
except Exception as e:
print("An error occurred while exporting your Narrative:")
print(str(e))
return 1
class NarrativeExportTesting(unittest.TestCase):
@classmethod
@mock.patch('biokbase.narrative.exporter.exporter.NarrativeIO')
def setUpClass(self, mock_io):
mock_io.return_value.test_connection.return_value = ""
mock_io.return_value.read_narrative = mock_read_narrative
self.exporter = NarrativeExporter()
@classmethod
def tearDownClass(self):
# delete generated file
if os.path.isfile(output_file):
os.remove(output_file)
def test_export_good(self):
self.exporter.export_narrative(test_narrative_ref, output_file)
self.assertTrue(os.path.isfile(output_file))
def test_export_bad(self):
with self.assertRaises(ValueError) as err:
self.exporter.export_narrative(bad_narrative_ref, output_file)
def test_export_private(self):
with self.assertRaises(PermissionsError) as err:
self.exporter.export_narrative(private_narrative_ref, output_file)
class NarrativeExportTesting(unittest.TestCase):
@classmethod
@mock.patch("biokbase.narrative.exporter.exporter.NarrativeIO")
def setUpClass(self, mock_io):
mock_io.return_value.test_connection.return_value = ""
mock_io.return_value.read_narrative = mock_read_narrative
self.exporter = NarrativeExporter()
@classmethod
def tearDownClass(self):
# delete generated file
if os.path.isfile(output_file):
os.remove(output_file)
def test_export_good(self):
self.exporter.export_narrative(test_narrative_ref, output_file)
self.assertTrue(os.path.isfile(output_file))
def test_export_bad(self):
with self.assertRaises(ValueError) as err:
self.exporter.export_narrative(bad_narrative_ref, output_file)
def test_export_private(self):
with self.assertRaises(PermissionsError) as err:
self.exporter.export_narrative(private_narrative_ref, output_file)
def main(args):
if not args.narrative_ref:
print("Must include a Narrative object reference in the format XXX/YYY (these are the numbers in the usual Narrative URL)")
return 1
if not args.outfile:
print("Must include an output file for exporting the Narrative!")
return 1
outfile = args.outfile
if not outfile.lower().endswith(".html"):
outfile = outfile + ".html"
exporter = NarrativeExporter()
try:
exporter.export_narrative(args.narrative_ref, outfile)
except PermissionsError:
print("The Narrative at reference " + args.narrative_ref + " does not appear to be public!")
return 1
except Exception as e:
print("An error occurred while exporting your Narrative:")
print(str(e))
return 1
def setUpClass(self, mock_io):
mock_io.return_value.test_connection.return_value = ""
mock_io.return_value.read_narrative = mock_read_narrative
self.exporter = NarrativeExporter()
def setUpClass(self, mock_io):
mock_io.return_value.test_connection.return_value = ""
mock_io.return_value.read_narrative = mock_read_narrative
self.exporter = NarrativeExporter()
