def initialize(): # pragma: no cover
"""
Displays graphics from commandline.py and loads runtime parameters, from a tuple, as a dictionary.
:return: a dictionary of the runtime parameters
"""
initializeGraphics()
folder, analysis, truth, snp, score, beta, filename, threshold, separ, kt_type, \
kt_type_separ, severity, pvaladjust, covar, savep= checkArgs()
args = {
'folder': folder,
'analysis': analysis,
'truth': truth,
'snp': snp,
'score': score,
'beta': beta,
'filename': filename,
'threshold': threshold,
'separ': separ,
'kt_type': kt_type,
'kt_type_separ': kt_type_separ,
'severity': severity,
'pvaladjust': pvaladjust,
'covar': covar,
'savep': savep
}
return args
def initialize():
"""
Displays graphics from commandline.py and loads runtime parameters, from a tuple, as a dictionary.
:return: a dictionary of the runtime parameters
"""
initializeGraphics()
folder, analysis, truth, snp, score, beta, filename, threshold, separ, kt_type,\
kt_type_separ, severity = checkArgs()
args = {'folder': folder, 'analysis': analysis, 'truth': truth, 'snp': snp, 'score': score, 'beta': beta,
'filename': filename, 'threshold': threshold, 'separ': separ, 'kt_type': kt_type,
'kt_type_separ': kt_type_separ}
return args
