def get_study(study_id):
study = StudyService.get_study(study_id)
if (study is None):
raise ApiError("unknown_study",
'The study "' + study_id + '" is not recognized.',
status_code=404)
return StudySchema().dump(study)
def do_task_validate_only(self, task, study_id, workflow_id, *args,
**kwargs):
study = StudyService.get_study(study_id)
if study:
return {"DETAIL": "Passed validation.", "STATUS": "No Error"}
else:
raise ApiError.from_task(
code='bad_study',
message=f'No study for study_id {study_id}',
task=task)
def update_study(study_id, body):
"""Pretty limited, but allows manual modifications to the study status """
if study_id is None:
raise ApiError('unknown_study', 'Please provide a valid Study ID.')
study_model = session.query(StudyModel).filter_by(id=study_id).first()
if study_model is None:
raise ApiError('unknown_study',
'The study "' + study_id + '" is not recognized.')
study: Study = StudyForUpdateSchema().load(body)
status = StudyStatus(study.status)
study_model.last_updated = datetime.utcnow()
if study_model.status != status:
study_model.status = status
StudyService.add_study_update_event(
study_model,
status,
StudyEventType.user,
user_uid=UserService.current_user().uid
if UserService.has_user() else None,
comment='' if not hasattr(study, 'comment') else study.comment,
)
if status == StudyStatus.open_for_enrollment:
study_model.enrollment_date = study.enrollment_date
session.add(study_model)
session.commit()
if status == StudyStatus.abandoned or status == StudyStatus.hold:
WorkflowService.process_workflows_for_cancels(study_id)
# Need to reload the full study to return it to the frontend
study = StudyService.get_study(study_id)
return StudySchema().dump(study)