def convert_sql_to_xml(filename, id):
config = {'host': 'vistrails.sci.utah.edu',
'port': 3306,
'user': '******',
'passwd': '8edLj4',
'db': 'vistrails'}
try:
db_connection = io.open_db_connection(config)
vistrail = io.open_vistrail_from_db(db_connection, id)
io.save_vistrail_to_xml(vistrail, filename)
io.close_db_connection(db_connection)
except MySQLdb.Error, e:
print e
def convert_sql_to_xml(filename, id):
config = {'host': 'localhost',
'port': 3306,
'user': '******',
'passwd': 'vistrailspwd',
'db': 'vistrails'}
try:
dbConnection = io.open_db_connection(config)
vistrail = io.open_vistrail_from_db(dbConnection, id)
io.setDBParameters(vistrail, config)
io.save_vistrail_to_xml(vistrail, filename)
io.close_db_connection(dbConnection)
except MySQLdb.Error, e:
print e
def convert_sql_to_xml(filename, id):
config = {'host': 'localhost',
'port': 3306,
'user': '******',
'passwd': 'vistrailspwd',
'db': 'vistrails'}
try:
dbConnection = io.open_db_connection(config)
vistrail = io.open_vistrail_from_db(dbConnection, id)
io.setDBParameters(vistrail, config)
io.save_vistrail_to_xml(vistrail, filename)
io.close_db_connection(dbConnection)
except MySQLdb.Error, e:
print e
def convert_sql_to_xml(filename, id):
config = {
'host': 'vistrails.sci.utah.edu',
'port': 3306,
'user': '******',
'passwd': '8edLj4',
'db': 'vistrails'
}
try:
db_connection = io.open_db_connection(config)
vistrail = io.open_vistrail_from_db(db_connection, id)
io.save_vistrail_to_xml(vistrail, filename)
io.close_db_connection(db_connection)
except MySQLdb.Error, e:
print e
def new_save_vistrail_to_zip_xml(vistrail, filename):
# Dumb hack to figure out if we are autosaving
if filename.find('vt_autosaves') > 0:
getBuilderWindow().startProgress('Autosaving...')
else:
getBuilderWindow().startProgress('Saving...')
# Write the vistrail file to disk
(file_, xmlfname) = tempfile.mkstemp(suffix='.xml')
os.close(file_)
save_vistrail_to_xml(vistrail,xmlfname)
vt_fname = os.path.join(os.path.dirname(xmlfname), 'vistrail')
if os.path.exists(vt_fname):
os.remove(vt_fname)
os.rename(xmlfname, vt_fname)
zip_fnames = [vt_fname, ]
#Audio Dir
###################################################
zip_audio_folder = []
audio_dir = vistrail.db_audio_dir
zip_audio_folder.append(audio_dir)
###################################################
#Video Dir
###################################################
zip_video_folder = []
video_dir = vistrail.db_video_dir
zip_video_folder.append(video_dir)
###################################################
getBuilderWindow().updateProgress(0.2)
# Save binary data
(bin_file, bin_filename) = tempfile.mkstemp(suffix='.bin')
os.close(bin_file)
bfile = open(bin_filename, "wb")
vistrail.binary_data.tofile(bfile)
bfile.close()
bin_fname = os.path.join(os.path.dirname(bin_filename), 'data')
if os.path.exists(bin_fname):
os.remove(bin_fname)
os.rename(bin_filename, bin_fname)
zip_fnames.append(bin_fname)
getBuilderWindow().updateProgress(0.5)
if vistrail.log is not None and len(vistrail.log.workflow_execs) > 0:
if vistrail.log_filename is None:
(log_file, log_filename) = tempfile.mkstemp(suffix='.xml')
os.close(log_file)
log_file = open(log_filename, "wb")
else:
log_filename = vistrail.log_filename
log_file = open(log_filename, 'ab')
print "+++ ", log_filename
print "*** ", log_file
if not hasattr(log_file, "write"):
print "no!!!"
# append log to log_file
for workflow_exec in vistrail.log.workflow_execs:
daoList = getVersionDAO(currentVersion)
daoList.save_to_xml(workflow_exec, log_file, {}, currentVersion)
log_file.close()
log_fname = os.path.join(os.path.dirname(log_filename), 'log')
if os.path.exists(log_fname):
os.remove(log_fname)
os.rename(log_filename, log_fname)
zip_fnames.append(log_fname)
try:
zf = zipfile.ZipFile(file=filename,mode='w',
allowZip64=True)
# Add standard vistrails files
for f in zip_fnames:
zf.write(f,os.path.basename(f),zipfile.ZIP_DEFLATED)
if zip_audio_folder[0] != None:
if os.path.isdir(zip_audio_folder[0]) == True:
for d in zip_audio_folder:
addFolderToZipFile(zf, d, "audio")
if zip_video_folder[0] != None:
if os.path.isdir(zip_video_folder[0]) == True:
for v in zip_video_folder:
addFolderToZipFile(zf, v, "video")
getBuilderWindow().updateProgress(0.75)
# Add saved files. Append indicator of file type because it needed
# when extracting the zip on Windows
for (f,b) in vistrail.saved_files:
basename = os.path.join("vt_saves",os.path.basename(f))
if b:
basename += ".b"
else:
basename += ".a"
zf.write(f, basename, zipfile.ZIP_DEFLATED)
zf.close()
currentFolder = []
except Exception, e:
# Allow autosaves to fail silently
if filename.find('vt_autosaves') <0:
raise Exception('Error writing file!\nThe file may be invalid or you\nmay have insufficient permissions.')