def test_will_guess_stupid_names(self):
p1 = self.tempdir / 'Ponies'
with self.assertRaises(OSError):
utils.guess_channel_dir(self.tempdir, 'ponies')
p1.mkdir()
res = utils.guess_channel_dir(self.tempdir, 'ponies')
exp = ('Ponies', p1)
self.assertEqual(res, exp)
def test_guesses_mkate_aliases(self):
for alias in ['mKate', 'Alexa Fluor 555', 'Alexa Fluor 568', 'AF555', 'AF568']:
mkatedir = self.tempdir / alias
with self.assertRaises(OSError):
utils.guess_channel_dir(self.tempdir, 'af555')
mkatedir.mkdir()
res = utils.guess_channel_dir(self.tempdir, 'af555')
exp = (alias, mkatedir)
self.assertEqual(res, exp)
mkatedir.rmdir()
def test_guesses_rfp_aliases(self):
for alias in ['AF647', 'alexa_fluor_647', 'DSRed']:
gfpdir = self.tempdir / alias
with self.assertRaises(OSError):
utils.guess_channel_dir(self.tempdir, 'rfp')
gfpdir.mkdir()
res = utils.guess_channel_dir(self.tempdir, 'rfp')
exp = (alias, gfpdir)
self.assertEqual(res, exp)
gfpdir.rmdir()
def test_guesses_gfp_aliases(self):
for alias in ['EGFP', 'Alexa Fluor 488', 'AF488']:
gfpdir = self.tempdir / alias
with self.assertRaises(OSError):
utils.guess_channel_dir(self.tempdir, 'gfp')
gfpdir.mkdir()
res = utils.guess_channel_dir(self.tempdir, 'gfp')
exp = (alias, gfpdir)
self.assertEqual(res, exp)
gfpdir.rmdir()
def test_guesses_dapi_aliases(self):
for alias in ['DAPI', 'af405', 'AF350', 'Hoechst']:
dapidir = self.tempdir / alias
with self.assertRaises(OSError):
utils.guess_channel_dir(self.tempdir, 'dapi')
dapidir.mkdir()
res = utils.guess_channel_dir(self.tempdir, 'dapi')
exp = (alias, dapidir)
self.assertEqual(res, exp)
dapidir.rmdir()
def test_guesses_brightfield_aliases(self):
for alias in ['TL Brightfield', 'Phase']:
phasedir = self.tempdir / alias
with self.assertRaises(OSError):
utils.guess_channel_dir(self.tempdir, 'brightfield')
phasedir.mkdir()
res = utils.guess_channel_dir(self.tempdir, 'brightfield')
exp = (alias, phasedir)
self.assertEqual(res, exp)
phasedir.rmdir()