def test_convert_directory2(self): tmp_output_dir = tempfile.mkdtemp() try: convert_directory.convert_directory("/Users/abrys/Downloads/dicom_T1_UNKNOWN_2", "/Users/abrys/Downloads") finally: shutil.rmtree(tmp_output_dir)
def test_convert_directory(self): tmp_output_dir = tempfile.mkdtemp() try: convert_directory.convert_directory(test_data.GENERIC_ANATOMICAL, tmp_output_dir) assert os.path.isfile(os.path.join(tmp_output_dir, '4_dicom2nifti.nii.gz')) finally: shutil.rmtree(tmp_output_dir)
def test_convert_directory2(self): tmp_output_dir = tempfile.mkdtemp() try: convert_directory.convert_directory("/Users/abrys/Downloads/test", "/Users/abrys/Downloads") finally: shutil.rmtree(tmp_output_dir)
def test_convert_dti_12(self): tmp_output_dir = tempfile.mkdtemp() os.makedirs('/Users/abrys/Documents/data/dcm2nii_dti/results/JB_b700', exist_ok=True) try: convert_directory.convert_directory('/Users/abrys/Documents/data/dcm2nii_dti/JB_b700', '/Users/abrys/Documents/data/dcm2nii_dti/results/JB_b700') finally: shutil.rmtree(tmp_output_dir)
def test_convert_directory2(self): tmp_output_dir = tempfile.mkdtemp() try: import pydicom # headers = pydicom.read_file("/Users/abrys/Downloads/failing_cases/test.dcm") convert_directory.convert_directory("/Users/abrys/Downloads/Agfa", "/Users/abrys/Downloads/Agfa") finally: shutil.rmtree(tmp_output_dir)
def test_convert_directory3(self): tmp_output_dir = tempfile.mkdtemp() try: import pydicom settings.disable_validate_slicecount() convert_directory.convert_directory( "/Users/abrys/Downloads/single_slice", "/Users/abrys/Downloads/single_slice") finally: shutil.rmtree(tmp_output_dir)
def test_convert_dti_12(self): tmp_output_dir = tempfile.mkdtemp() os.makedirs('/Users/abrys/Documents/data/dcm2nii_dti/results/JB_b700', exist_ok=True) try: convert_directory.convert_directory( '/Users/abrys/Documents/data/dcm2nii_dti/JB_b700', '/Users/abrys/Documents/data/dcm2nii_dti/results/JB_b700') finally: shutil.rmtree(tmp_output_dir)
def test_convert_directory(self): tmp_output_dir = tempfile.mkdtemp() try: settings.enable_resampling() settings.set_resample_spline_interpolation_order(1) settings.set_resample_padding(-1000) settings.disable_validate_slice_increment() settings.disable_validate_orthogonal() convert_directory.convert_directory("/Users/abrys/Downloads/dicom_CT_UNKNOWN_3", "/Users/abrys/Downloads") finally: shutil.rmtree(tmp_output_dir)
def test_convert_directory(self): tmp_output_dir = tempfile.mkdtemp() try: settings.enable_resampling() settings.set_resample_spline_interpolation_order(1) settings.set_resample_padding(-1000) settings.disable_validate_slice_increment() settings.disable_validate_orthogonal() convert_directory.convert_directory("/Users/abrys/Downloads/test", "/Users/abrys/Downloads") finally: shutil.rmtree(tmp_output_dir)
tmp_output_dir = tempfile.mkdtemp() try: import pydicom # headers = pydicom.read_file("/Users/abrys/Downloads/failing_cases/test.dcm") convert_directory.convert_directory("/Users/abrys/Downloads/Agfa", "/Users/abrys/Downloads/Agfa") finally: shutil.rmtree(tmp_output_dir) def test_convert_directory3(self): tmp_output_dir = tempfile.mkdtemp() try: import pydicom settings.disable_validate_slicecount() convert_directory.convert_directory( "/Users/abrys/Downloads/single_slice", "/Users/abrys/Downloads/single_slice") finally: shutil.rmtree(tmp_output_dir) if __name__ == '__main__': convert_directory.convert_directory("/Users/abrys/Downloads/Agfa", "/Users/abrys/Downloads/Agfa") # unittest.main()
def main(): print('TEST') convert_directory.convert_directory("/Users/abrys/Downloads/Agfa", "/Users/abrys/Downloads/Agfa")