Python verification_file Exemples

Exemple #1

Fichier : test_assembler_benchmark.py Projet : bioboxes/command-line-interface

def create_args(output):
    return ["run",
            "assembler_benchmark",
            "bioboxes/quast",
            "--input-fasta={}".format(helper.verification_file('assembler_benchmark/assembly.fasta')),
            "--input-ref={}".format(helper.verification_file('assembler_benchmark/references')),
            "--output={}".format(output),
            "--no-rm"]

Exemple #2

Fichier : test_assembler_benchmark.py Projet : michaelbarton/command-line-interface

def create_args(output):
    return [
        "run", "assembler_benchmark", "bioboxes/quast",
        "--input-fasta={}".format(
            helper.verification_file('assembler_benchmark/assembly.fasta')),
        "--input-ref={}".format(
            helper.verification_file('assembler_benchmark/references')),
        "--output={}".format(output), "--no-rm"
    ]

Exemple #3

Fichier : test_short_read_assembly.py Projet : bioboxes/command-line-interface

def create_args(output):
    return ["run",
            "short_read_assembler",
            "bioboxes/velvet",
            "--input={}".format(helper.verification_file('short_read_assembler/genome_paired_reads.fq.gz')),
            "--output={}".format(output),
            "--no-rm"]

Exemple #4

def create_args(output):
    return [
        "run", "short_read_assembler", "bioboxes/velvet", "--input={}".format(
            helper.verification_file(
                'short_read_assembler/genome_paired_reads.fq.gz')),
        "--output={}".format(output), "--no-rm"
    ]