def test_calc_bases_overlapped(): iv = Interval(50, 150) iv_roverlap = [Interval(100, 200)] assert ivt.calc_bases_overlapped(iv, iv_roverlap) == 50 iv_loverlap = [Interval(0, 100)] assert ivt.calc_bases_overlapped(iv, iv_loverlap) == 50 iv_contained = [Interval(75, 125)] assert ivt.calc_bases_overlapped(iv, iv_contained) == 50 iv_contains = [Interval(0, 200)] assert ivt.calc_bases_overlapped(iv, iv_contains) == 100
def test_calc_based_overlapped_merged(): iv = Interval(50, 150) iv_overlap = [Interval(50, 200), Interval(0, 100)] assert ivt.calc_bases_overlapped(iv, iv_overlap) == 100