def run():
"""
Main process that\:
* Parse command-line arguments,
* Parse configuration file,
* Initiates logger,
* Check GitHub permissions,
* Check Handle Service connection,
* Run the issue action.
"""
# Get command-line arguments
args = get_args()
# init logging
if args.v and args.log is not None:
init_logging(args.log, level='DEBUG')
elif args.log is not None:
init_logging(args.log)
else:
init_logging(None)
# Run command
# Retrieve command has a slightly different behavior from the rest so it's singled out
if args.command != 'retrieve':
issue_file = _get_issue(args.issue)
dataset_file = _get_datasets(args.dsets)
print(args.issue, issue_file)
process_command(args.command, issue_file, dataset_file, args.issue, args.dsets)
elif args.command == 'retrieve':
if args.id is not None:
list_of_ids = args.id
# In the case the user is requesting more than one issue
for directory in [args.issues, args.dsets]:
# Added the '.' test to avoid creating directories that are intended to be files.
if not os.path.exists(directory) and '.' not in directory:
os.makedirs(directory)
# This tests whether a list of ids is provided with a directory where to dump the retrieved
# issues and related datasets.
if len(list_of_ids) > 1 and not os.path.isdir(directory):
print('You have provided multiple ids but a single file as destination, aborting.')
sys.exit(1)
# Looping over list of ids provided
for n in list_of_ids:
local_issue = LocalIssue(None, None, None, None, args.command)
local_issue.retrieve(n, args.issues, args.dsets)
else:
# TODO provide possibility to flush database contents from a dedicated webservice?
pass
def process_command(command, issue_file, dataset_file, issue_path, dataset_path):
payload = issue_file
if dataset_file is not None:
dsets = _get_datasets(dataset_file)
else:
dsets = None
if command == 'create':
payload['uid'] = str(uuid4())
payload['workflow'] = unicode('new')
payload['dateCreated'] = datetime.utcnow().strftime('%Y-%m-%d %H:%M:%S')
local_issue = LocalIssue(payload, dsets, issue_path, dataset_path, command)
local_issue.validate(command)
if command == 'create':
local_issue.create()
elif command == 'update':
local_issue.update()
elif command == 'close':
local_issue.close()
def process_command(command,
issue_file=None,
dataset_file=None,
issue_path=None,
dataset_path=None,
status=None,
list_of_ids=None,
**kwargs):
payload = issue_file
# Fill in mandatory fields
if command in [CREATE, UPDATE, CLOSE]:
if 'passphrase' in kwargs:
credentials = _authenticate(passphrase=kwargs['passphrase'])
else:
credentials = _authenticate()
# Initializing non-mandatory fields to pass validation process.
if URL not in payload.keys():
payload[URL] = ''
if MATERIALS not in payload.keys():
payload[MATERIALS] = []
if command == CREATE:
payload[UID] = str(uuid4())
payload[STATUS] = unicode(STATUS_NEW)
payload[DATE_CREATED] = datetime.utcnow().strftime(TIME_FORMAT)
payload[DATE_UPDATED] = payload[DATE_CREATED]
local_issue = LocalIssue(action=command,
issue_file=payload,
dataset_file=dataset_file,
issue_path=issue_path,
dataset_path=dataset_path)
if command not in [RETRIEVE, RETRIEVE_ALL]:
local_issue.validate(command)
# WS Call
if command == CREATE:
local_issue.create(credentials)
elif command == UPDATE:
local_issue.update(credentials)
elif command == CLOSE:
local_issue.close(credentials, status)
elif command == RETRIEVE:
local_issue.retrieve(list_of_ids, issue_path, dataset_path)
elif command == RETRIEVE_ALL:
local_issue.retrieve_all(issue_path, dataset_path)
def process_command(command, issue_file=None, dataset_file=None, issue_path=None, dataset_path=None, status=None,
list_of_ids=None, **kwargs):
payload = issue_file
if command in [CREATE, UPDATE, CLOSE]:
credentials = _get_credentials(kwargs)
# Initializing non-mandatory fields to pass validation process.
if URL not in payload.keys():
payload[URL] = []
if MATERIALS not in payload.keys():
payload[MATERIALS] = []
# intializing mandatory new issue fields
if command == CREATE:
payload[UID] = str(uuid4())
payload[STATUS] = unicode(STATUS_NEW)
# instatiating a localissue object
local_issue = LocalIssue(action=command, issue_file=payload, dataset_file=dataset_file, issue_path=issue_path,
dataset_path=dataset_path)
# issue file validation
if command not in [RETRIEVE, RETRIEVE_ALL]:
local_issue.validate(command)
# WS Call
if command == CREATE:
local_issue.create(credentials)
elif command == UPDATE:
local_issue.update(credentials)
elif command == CLOSE:
local_issue.close(credentials, status)
elif command == RETRIEVE:
local_issue.retrieve(list_of_ids, issue_path, dataset_path)
elif command == RETRIEVE_ALL:
local_issue.retrieve_all(issue_path, dataset_path)