Python get_contig_stats Exemples

Exemple #1

 def test_total_size_4(self):
     _, _, _, total_size, _ = get_contig_stats(
         'test/test_contig_stats/contig_stats_4.fasta')
     self.assertEqual(total_size, 260)

Exemple #2

 def test_ambiguous_bases_3(self):
     _, _, _, _, ambiguous = get_contig_stats(
         'test/test_contig_stats/contig_stats_3.fasta')
     self.assertEqual(ambiguous, 'no')

Exemple #3

 def test_ambiguous_bases_4(self):
     _, _, _, _, ambiguous = get_contig_stats(
         'test/test_contig_stats/contig_stats_4.fasta')
     self.assertEqual(ambiguous, 'yes (4)')

Exemple #4

 def test_longest_1(self):
     _, _, longest_contig, _, _ = get_contig_stats(
         'test/test_contig_stats/contig_stats_1.fasta')
     self.assertEqual(longest_contig, 45)

Exemple #5

 def test_longest_2(self):
     _, _, longest_contig, _, _ = get_contig_stats(
         'test/test_contig_stats/contig_stats_2.fasta')
     self.assertEqual(longest_contig, 200)

Exemple #6

 def test_n50_2(self):
     _, n50, _, _, _ = get_contig_stats(
         'test/test_contig_stats/contig_stats_2.fasta')
     self.assertEqual(n50, 200)

Exemple #7

 def test_n50_1(self):
     _, n50, _, _, _ = get_contig_stats(
         'test/test_contig_stats/contig_stats_1.fasta')
     self.assertEqual(n50, 40)

Exemple #8

 def test_count_2(self):
     contig_count, _, _, _, _ = get_contig_stats(
         'test/test_contig_stats/contig_stats_2.fasta')
     self.assertEqual(contig_count, 3)

Exemple #9

Fichier : test_contig_stats.py Projet : fuying98/Kleborate

 def test_ambiguous_bases_4(self):
     _, _, _, ambiguous_bases = get_contig_stats(
         'test/sequences/contig_stats_4.fasta')
     self.assertEqual(ambiguous_bases, 'yes')

Exemple #10

Fichier : test_contig_stats.py Projet : fuying98/Kleborate

 def test_count_1(self):
     contig_count, _, _, _ = get_contig_stats(
         'test/sequences/contig_stats_1.fasta')
     self.assertEqual(contig_count, 4)