def get_valid_markers_by_symbol(self, symbol):
"""
Retrieve list of valid markers by symbol
"""
search_query = SearchQuery()
search_query.set_param('symbol', symbol)
# restrict to official and withdrawn
search_query.set_param('_marker_status_keys', [1,2])
# only search mouse
search_query.set_param('_organism_keys', [1])
search_results = self.marker_dao.search(search_query)
markers = search_results.items
batchLoadAttribute(markers, 'current_markers')
batchLoadAttribute(markers, 'featuretype_vocterms')
ValidMarkerSortHelper().sort(markers)
# convert db models to domain objects
search_results.items = convert_models(markers, SmallMarker)
return search_results
def _get_emapa_term_results_count(self, term_id):
search_query = SearchQuery()
search_query.set_param("direct_structure_id", term_id)
count = self.gxdresult_dao.get_search_count(search_query)
return count
