def test_parse_summary():
with open(_get_file('partial_summary.txt'), 'r') as fh:
reader = core.parse_summary(fh)
first = next(reader)
assert 'ftp_path' in first
assert 'assembly_accession' in first
fh.seek(2)
reader = core.parse_summary(fh)
first = next(reader)
assert 'assembly_accession' in first
def test_parse_summary():
with open(_get_file('partial_summary.txt'), 'r') as fh:
reader = core.parse_summary(fh)
first = next(reader)
assert 'ftp_path' in first
assert 'assembly_accession' in first
fh.seek(2)
reader = core.parse_summary(fh)
first = next(reader)
assert 'assembly_accession' in first
def test_filter_entries():
"""Test filter_entries."""
config = NgdConfig()
with open(_get_file('assembly_status.txt'), 'r') as fh:
entries = list(core.parse_summary(fh))
assert core.filter_entries(entries, config) == entries
expected = entries[-1:]
config.assembly_accessions = "GCF_000203835.1"
assert core.filter_entries(entries, config) == expected
def test_filter_entries():
"""Test filter_entries."""
config = NgdConfig()
with open(_get_file('assembly_status.txt'), 'r') as fh:
entries = list(core.parse_summary(fh))
assert core.filter_entries(entries, config) == entries
expected = entries[-1:]
config.assembly_accessions = "GCF_000203835.1"
assert core.filter_entries(entries, config) == expected