Python OrderedDict.default Exemples

Exemple #1

Fichier : genome_registry.py Projet : ckottcam/pybedtools

    ('chr3R', (0, 27905053)),
    ('chr4', (0, 1351857)),
    ('chrX', (0, 22422827)),
    ('chr2LHet', (0, 368872)),
    ('chr2RHet', (0, 3288761)),
    ('chr3LHet', (0, 2555491)),
    ('chr3RHet', (0, 2517507)),
    ('chrM', (0, 19517)),
    ('chrU', (0, 10049037)),
    ('chrUextra', (0, 29004656)),
    ('chrXHet', (0, 204112)),
    ('chrYHet', (0, 347038)),
))

# No chrUextra or chrM
dm3.default = OrderedDict()
for chrom, size in dm3.items():
    if chrom in ['chrUextra', 'chrM']:
        continue
    dm3.default[chrom] = size

# No chrU*, chr*Het, or chrM
dm3.euchromatic = OrderedDict()
for chrom, size in dm3.default.items():
    if 'chrU' in chrom:
        continue
    if 'Het' in chrom:
        continue
    dm3.euchromatic[chrom] = size

Exemple #2

Fichier : genome_registry.py Projet : dnewkirk/pybedtools

    ('chr3R', (0, 27905053)),
    ('chr4', (0, 1351857)),
    ('chrX', (0, 22422827)),
    ('chr2LHet', (0, 368872)),
    ('chr2RHet', (0, 3288761)),
    ('chr3LHet', (0, 2555491)),
    ('chr3RHet', (0, 2517507)),
    ('chrM', (0, 19517)),
    ('chrU', (0, 10049037)),
    ('chrUextra', (0, 29004656)),
    ('chrXHet', (0, 204112)),
    ('chrYHet', (0, 347038)),
))

# No chrUextra or chrM
dm3.default = OrderedDict()
for chrom, size in dm3.items():
    if chrom in ['chrUextra', 'chrM']:
        continue
    dm3.default[chrom] = size

# No chrU*, chr*Het, or chrM
dm3.euchromatic = OrderedDict()
for chrom, size in dm3.default.items():
    if 'chrU' in chrom:
        continue
    if 'Het' in chrom:
        continue
    dm3.euchromatic[chrom] = size

mm9 = OrderedDict((