def test_relative_rmse():
"""
Test the calculation of relative RMSE from two model objects
While you're at it, test the SphereModel class as well.
"""
Model1 = SphereModel(data_path+'small_dwi.nii.gz',
data_path + 'dwi.bvecs',
data_path + 'dwi.bvals',)
Model2 = SphereModel(data_path+'small_dwi.nii.gz',
data_path + 'dwi.bvecs',
data_path + 'dwi.bvals',)
# Since we have exactly the same data in both models, the rmse between them
# is going to be 0 everywhere, which means that the relative rmse is
# infinite...
npt.assert_equal(ozm.relative_rmse(Model1, Model2),
np.inf * np.ones(Model1.shape[:-1]))
help='Bvals file (FSL format)')
parser.add_argument('out_file', action='store', metavar='File',
help='Output file name (.nii.gz)')
parser.add_argument('--mask_file', action='store', metavar='File',
help='Mask file (only the voxels within the binary mask will be analyzed (.nii.gz; default: analyze all) ',
default=None)
params = parser.parse_args()
if __name__ == "__main__":
Model1 = dti.TensorModel(params.dwi_file1,
params.bvecs_file1,
params.bvals_file1,
mask=params.mask_file,
params_file='temp')
Model2 = dti.TensorModel(params.dwi_file2,
params.bvecs_file2,
params.bvals_file2,
mask=params.mask_file,
params_file='temp')
# Do it and save:
nib.Nifti1Image(ana.relative_rmse(Model1, Model2),
Model1.affine).to_filename(params.out_file)