def _execute_spm_config_test(defaults, explicitly_set, spm_root):
"""execute tests prepared by test_spm_config."""
defaults = dict(defaults)
explicitly_set = dict(explicitly_set)
# at the beginning all paths point to bad locations,
# configuration should fail
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert (spm_dir is None)
_fix_spm_testing_default(defaults, 'matlab_exec')
# path to Matlab was fixed but still no path to SPM home dir,
# configuration should fail.
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert (spm_dir is None)
_fix_spm_testing_default(defaults, 'spm_dir_template')
# path to Matlab is good, path to spm13 is valid but this installation
# is broken (missing tpm dir), so spm12 should be selected.
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert (os.path.samefile(
spm_dir, os.path.join(spm_root, 'spm12/spm12/spm12_mcr/spm12/')))
_break_spm_testing_default(defaults, 'spm_dir_template')
_fix_spm_testing_default(defaults, 'spm_mcr_template')
# path to Matlab is bad but paths to SPM MCRs are good,
# paths to SPM home dirs are bad but can be inferred from
# SPM MCR location; configuration should succeed and select
# spm12 (spm13 is broken).
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert (os.path.samefile(
spm_dir, os.path.join(spm_root, 'spm12/spm12/spm12_mcr/spm12/')))
_logger.debug('setting TEST_SPM_MCR env variable')
os.environ['TEST_SPM_MCR'] = os.path.join(spm_root, 'spm7/spm7.sh/')
# environment variables have priority over defaults, so spm7
# should be preferred.
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert (os.path.samefile(
spm_dir, os.path.join(spm_root, 'spm7/spm7/spm7_mcr/spm7/')))
_fix_spm_testing_explicitly_set_location(explicitly_set, 'config_spm_mcr')
# path to spm specified in config file was fixed and points to
# spm8, spm8 should be chosen.
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert (os.path.samefile(
spm_dir, os.path.join(spm_root, 'spm8/spm8/spm8_mcr/spm8/')))
_fix_spm_testing_explicitly_set_location(explicitly_set, 'cli_spm_mcr')
# path to spm specified in command line was fixed and points to spm7,
# since cli has priority over config file, spm7 should be chosen.
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert (os.path.samefile(
spm_dir, os.path.join(spm_root, 'spm7/spm7/spm7_mcr/spm7/')))
_logger.debug('setting "prefer_matlab"')
_fix_spm_testing_default(defaults, 'spm_dir_template')
# paths to SPM homes were fixed; since we prefer Matlab the version
# of the preferred MCR has no importance and is ignored; the highest
# valid install (spm12) should be chosen.
spm_dir = _configure_spm(defaults=defaults,
prefer_matlab=True,
**explicitly_set)
assert (os.path.samefile(
spm_dir, os.path.join(spm_root, 'spm12/spm12/spm12_mcr/spm12/')))
_logger.info('SPM config test succeeded')
def _execute_spm_config_test(defaults, explicitly_set, spm_root):
"""execute tests prepared by test_spm_config."""
defaults = dict(defaults)
explicitly_set = dict(explicitly_set)
# at the beginning all paths point to bad locations,
# configuration should fail
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert(spm_dir is None)
_fix_spm_testing_default(defaults, 'matlab_exec')
# path to Matlab was fixed but still no path to SPM home dir,
# configuration should fail.
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert(spm_dir is None)
_fix_spm_testing_default(defaults, 'spm_dir_template')
# path to Matlab is good, path to spm13 is valid but this installation
# is broken (missing tpm dir), so spm12 should be selected.
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert(os.path.samefile(
spm_dir, os.path.join(spm_root, 'spm12/spm12/spm12_mcr/spm12/')))
_break_spm_testing_default(defaults, 'spm_dir_template')
_fix_spm_testing_default(defaults, 'spm_mcr_template')
# path to Matlab is bad but paths to SPM MCRs are good,
# paths to SPM home dirs are bad but can be inferred from
# SPM MCR location; configuration should succeed and select
# spm12 (spm13 is broken).
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert(os.path.samefile(
spm_dir, os.path.join(spm_root, 'spm12/spm12/spm12_mcr/spm12/')))
_logger.debug('setting TEST_SPM_MCR env variable')
os.environ['TEST_SPM_MCR'] = os.path.join(spm_root, 'spm7/spm7.sh/')
# environment variables have priority over defaults, so spm7
# should be preferred.
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert(os.path.samefile(
spm_dir, os.path.join(spm_root, 'spm7/spm7/spm7_mcr/spm7/')))
_fix_spm_testing_explicitly_set_location(explicitly_set, 'config_spm_mcr')
# path to spm specified in config file was fixed and points to
# spm8, spm8 should be chosen.
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert(os.path.samefile(
spm_dir, os.path.join(spm_root, 'spm8/spm8/spm8_mcr/spm8/')))
_fix_spm_testing_explicitly_set_location(explicitly_set, 'cli_spm_mcr')
# path to spm specified in command line was fixed and points to spm7,
# since cli has priority over config file, spm7 should be chosen.
spm_dir = _configure_spm(defaults=defaults, **explicitly_set)
assert(os.path.samefile(
spm_dir, os.path.join(spm_root, 'spm7/spm7/spm7_mcr/spm7/')))
_logger.debug('setting "prefer_matlab"')
_fix_spm_testing_default(defaults, 'spm_dir_template')
# paths to SPM homes were fixed; since we prefer Matlab the version
# of the preferred MCR has no importance and is ignored; the highest
# valid install (spm12) should be chosen.
spm_dir = _configure_spm(defaults=defaults, prefer_matlab=True,
**explicitly_set)
assert(os.path.samefile(
spm_dir, os.path.join(spm_root, 'spm12/spm12/spm12_mcr/spm12/')))
_logger.info('SPM config test succeeded')
def _fix_spm_testing_explicitly_set_location(locations_dict, key_to_fix):
_logger.debug('SPM config testing: fixing {}'.format(key_to_fix))
locations_dict[key_to_fix] = locations_dict[
key_to_fix].replace('.BAD_LOC', '')
def _break_spm_testing_default(defaults_dict, key_to_fix):
_logger.debug('SPM config testing: breaking {}'.format(key_to_fix))
defaults_dict[key_to_fix] = ['.'.join([s, 'BAD_LOC']) for
s in defaults_dict[key_to_fix]]
def _fix_spm_testing_default(defaults_dict, key_to_fix):
_logger.debug('SPM config testing: fixing {}'.format(key_to_fix))
defaults_dict[key_to_fix] = [
s.replace('.BAD_LOC', '') for s in defaults_dict[key_to_fix]]
def _fix_spm_testing_explicitly_set_location(locations_dict, key_to_fix):
_logger.debug('SPM config testing: fixing {}'.format(key_to_fix))
locations_dict[key_to_fix] = locations_dict[key_to_fix].replace(
'.BAD_LOC', '')
def _break_spm_testing_default(defaults_dict, key_to_fix):
_logger.debug('SPM config testing: breaking {}'.format(key_to_fix))
defaults_dict[key_to_fix] = [
'.'.join([s, 'BAD_LOC']) for s in defaults_dict[key_to_fix]
]
def _fix_spm_testing_default(defaults_dict, key_to_fix):
_logger.debug('SPM config testing: fixing {}'.format(key_to_fix))
defaults_dict[key_to_fix] = [
s.replace('.BAD_LOC', '') for s in defaults_dict[key_to_fix]
]
