Exemple #1
0
def binomial_ll(parameter, sample):
    """
    Return the likelihood of the model parameter under sample.
    """

    # compile our method body
    from qy import (
        Value,
        type_from_any,
        build_engine,
    )

    q = \
        Qy(
            return_type    = type_from_any(float)      ,
            argument_types = [type_from_any(float)] * 3,
            default_return = Value.from_any(numpy.nan) ,
            )

    with q.active() as bar:
        q.return_(binomial_log_pdf(*q.main_body.argument_values))

    engine = build_engine(q.module)

    # define the python wrapper
    from ctypes import (
        CFUNCTYPE,
        c_double,
    )
    prototype = CFUNCTYPE(c_double, c_double, c_double, c_double)
    generated = prototype(engine.get_pointer_to_function(q.main))

    from qy.support import raise_if_set

    def wrapper(parameter, sample):
        """
        Return the likelihood of the model parameter under sample.
        """

        parameter = numpy.asarray(parameter, Binomial.parameter_dtype)

        result = generated(sample, parameter["p"], parameter["n"])

        raise_if_set()

        return result

    # don't let the engine be GCed
    wrapper._engine = engine

    # replace and compute
    global binomial_ll

    binomial_ll = wrapper

    return binomial_ll(parameter, sample)
Exemple #2
0
def binomial_ll(parameter, sample):
    """
    Return the likelihood of the model parameter under sample.
    """

    # compile our method body
    from qy import (
        Value,
        type_from_any,
        build_engine,
        )

    q = \
        Qy(
            return_type    = type_from_any(float)      ,
            argument_types = [type_from_any(float)] * 3,
            default_return = Value.from_any(numpy.nan) ,
            )

    with q.active() as bar:
        q.return_(binomial_log_pdf(*q.main_body.argument_values))

    engine = build_engine(q.module)

    # define the python wrapper
    from ctypes import (
        CFUNCTYPE,
        c_double,
        )
    prototype = CFUNCTYPE(c_double, c_double, c_double, c_double)
    generated = prototype(engine.get_pointer_to_function(q.main))

    from qy.support import raise_if_set

    def wrapper(parameter, sample):
        """
        Return the likelihood of the model parameter under sample.
        """

        parameter = numpy.asarray(parameter, Binomial.parameter_dtype)

        result = generated(sample, parameter["p"], parameter["n"])

        raise_if_set()

        return result

    # don't let the engine be GCed
    wrapper._engine = engine

    # replace and compute
    global binomial_ll

    binomial_ll = wrapper

    return binomial_ll(parameter, sample)
Exemple #3
0
    def wrapper(*args, **kwargs):
        """
        Call a method of the active Qy instance.
        """

        return getattr(Qy.get_active(), name)(*args, **kwargs)