Exemple #1
0
 def testQuestion1_4(self):
     """ test question 1; global alignment with a gap penalty of -4 """         
     aln_global_4 = alignGlobal(self.seqA, self.seqB, self.blosum62_matrix, -4)        
     expected1 = aln_global_4.seqs[0].getSeqString()
     expected2 = aln_global_4.seqs[1].getSeqString()
     self.assertEquals("THIS-LI-NE-", expected1)
     self.assertEquals("--ISALIGNED", expected2)
Exemple #2
0
 def testQuestion1_8(self):
     """ test question 1; global alignment with a gap penalty of -8 """ 
     aln_global_8 = alignGlobal(self.seqA, self.seqB, self.blosum62_matrix, -8)
     expected1 = aln_global_8.seqs[0].getSeqString()
     expected2 = aln_global_8.seqs[1].getSeqString()
     self.assertEquals("THISLINE-", expected1)
     self.assertEquals("ISALIGNED", expected2)