def main(dataset='measurements.npy'): data = np.load(dataset, mmap_mode='r') print 'loaded', dataset, data.shape fig = plt.figure() ax = util.axes(fig, 111) trial = data[15, 1, 5] for f in range(0, len(trial), 300): util.plot_skeleton(ax, trial[f], alpha=1) x, y, z = trial[:, TARGET].T ax.plot(x, z, y, 'o-', color='#111111', alpha=0.5) util.set_limits(ax, center=(0, 0, 1), span=1) ax.w_xaxis.set_pane_color((1, 1, 1, 1)) ax.w_yaxis.set_pane_color((1, 1, 1, 1)) ax.w_zaxis.set_pane_color((1, 1, 1, 1)) #plt.gcf().set_size_inches(12, 10) #plt.savefig('single-trial.pdf', dpi=600) plt.show()
return transformed_frames[:, :, :2] # apply T transformed_sequences = np.asarray( [_transform_sequence(seq) for seq in sequences]) return transformed_sequences if __name__ == '__main__': # read in sequence dataset_dir = Path(__file__).parent / '../../datasets/KTH_Action_Dataset/' metadata_file = dataset_dir / 'metadata.csv' from datasets import KTHDataset dataset = KTHDataset(metadata_file, dataset_dir, use_confidence_scores=False) seqs, actions = dataset[:4] original_seq = np.copy(seqs[0]) augmented_sequences = augment_data(seqs[:4]) assert np.array_equal(seqs[0], original_seq) # check original sequence still intact from util import plot_skeleton print('Saving plot of skeleton') plot_skeleton(augmented_sequences[0], '../../datasets/example_augmented_plot.mp4')
def main(dataset='measurements.npy'): data = np.load(dataset, mmap_mode='r') print 'loaded', dataset, data.shape plots = list(range(N * N)) frames = [[] for _ in plots] for subj in data: for block in subj[1:]: for trial in block: if trial[0, C.col('trial-hand')] == C.right: for frame in trial: for i in plots: if within_region(frame, i): frames[i].append(frame) break u, v = np.mgrid[0:2 * np.pi:11j, 0:np.pi:7j] sphx = np.cos(u) * np.sin(v) sphy = np.sin(u) * np.sin(v) sphz = np.cos(v) fig = plt.figure() for i, postures in enumerate(frames): if not postures: continue if i != 2: continue postures = np.array(postures) for m in range(50): marker = postures[:, 17+m*4:17+(m+1)*4] drops = marker[:, 3] < 0 marker[drops, :3] = marker[~drops, :3].mean(axis=0) means = postures.mean(axis=0) stds = postures.std(axis=0) #ax = util.axes(fig, 111) #for frame in postures[::5]: # util.plot_skeleton(ax, frame, alpha=0.1) ax = util.axes(fig, 110 * N + i + 1) util.plot_skeleton(ax, means, alpha=1.0) for m in range(50): mx, my, mz = means[17+m*4:20+m*4] sx, sy, sz = stds[17+m*4:20+m*4] / 2 ax.plot_wireframe(sphx * sx + mx, sphz * sz + mz, sphy * sy + my, color=C.MARKER_COLORS[m], alpha=0.3) #tgtx, tgty, tgtz = postures.mean(axis=0)[ # C.cols('target-x', 'target-y', 'target-z')] #ax.plot([tgtx], [tgtz], [tgty], 'o', color='#111111') #for m in range(50): # marker = postures[:, 17 + 4 * m:17 + 4 * (m+1)] # position = marker.mean(axis=0) # size = marker.std(axis=0) # ax.plot_surface() util.set_limits(ax, center=(0, -0.5, 1), span=1) ax.w_xaxis.set_pane_color((1, 1, 1, 1)) ax.w_yaxis.set_pane_color((1, 1, 1, 1)) ax.w_zaxis.set_pane_color((1, 1, 1, 1)) ax.set_title(['Top Right', 'Top Left', 'Bottom Right', 'Bottom Left'][i]) #for m in range(50): # x, z, y = frame[m*4:m*4+3] # ax.text(x, y, z, str(m)) plt.gcf().set_size_inches(12, 10) #plt.savefig('reach-targets-with-variance.pdf', dpi=600) plt.show()