AutoHeadFix

Python code for automated control of behavioural apparatus and imaging for mice in home cage environment.

based on methods published here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4909937/ High-throughput automated home-cage mesoscopic functional imaging of mouse cortex. Murphy TH, Boyd JD, Bolaños F, Vanni MP, Silasi G, Haupt D, LeDue J. Nat Commun. 2016 Jun 13;7:11611

For documentation, see https://ubcbraincircuits.github.io/AutoHeadFix

Name		Name	Last commit message	Last commit date
Latest commit History 547 Commits
.vscode		.vscode
AHF_BrainLight		AHF_BrainLight
AHF_Camera		AHF_Camera
AHF_ContactCheck		AHF_ContactCheck
AHF_DataLogger		AHF_DataLogger
AHF_HeadFixer		AHF_HeadFixer
AHF_LickDetector		AHF_LickDetector
AHF_Notifier		AHF_Notifier
AHF_Reader		AHF_Reader
AHF_Rewarder		AHF_Rewarder
AHF_Stimulator		AHF_Stimulator
AHF_Stimulus		AHF_Stimulus
AHF_Subjects		AHF_Subjects
AHF_Trigger		AHF_Trigger
AHF_config		AHF_config
QuickStats		QuickStats
docs		docs
.gitignore		.gitignore
AHF_Base.py		AHF_Base.py
AHF_ClassAndDictUtils.py		AHF_ClassAndDictUtils.py
AHF_HardwareTester.py		AHF_HardwareTester.py
AHF_Task.py		AHF_Task.py
AHF_ValveControl.py		AHF_ValveControl.py
AutoHeadFix.ipf		AutoHeadFix.ipf
LICENSE		LICENSE
README.md		README.md
Subject_update.py		Subject_update.py
__init__.py		__init__.py
__main__2.py		__main__2.py
auto_start_script.sh		auto_start_script.sh
config.txt		config.txt
createCRON.sh		createCRON.sh
load_Config.sh		load_Config.sh
quickstats.py		quickstats.py
restart_if_no_data.py		restart_if_no_data.py
testscript.sh		testscript.sh
water_failsafe.py		water_failsafe.py

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Alice-Xiong/AutoHeadFix

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