EichlerLab / wssd_sunk Public

forked from bnelsj/wssd_sunk

Legacy codebase for WSSD and SUNK read depth file creation and analysis

Notifications

Name		Name	Last commit message	Last commit date
Latest commit History 29 Commits
calc_gc_depth		calc_gc_depth
.gitignore		.gitignore
.gitmodules		.gitmodules
Makefile		Makefile
README.md		README.md
analyze_control_regions.py		analyze_control_regions.py
bw_builder.py		bw_builder.py
combine_genotypes.py		combine_genotypes.py
fitting.py		fitting.py
generate_windowed_GC_ests.py		generate_windowed_GC_ests.py
generate_windowed_cp_ests.py		generate_windowed_cp_ests.py
get_GMM_genotypes.py		get_GMM_genotypes.py
get_gc_correction.py		get_gc_correction.py
gglob.py		gglob.py
kg_file_handling.py		kg_file_handling.py
make_ml_output_summary.py		make_ml_output_summary.py
ml_analyze_regions_snakemake.py		ml_analyze_regions_snakemake.py
ml_get_cpn.py		ml_get_cpn.py
run_bac_analysis.py		run_bac_analysis.py
wnd_cp_data.py		wnd_cp_data.py
wssd_common.py		wssd_common.py
wssd_common_v2.py		wssd_common_v2.py
wssd_make_combined_adjusted_tracks.py		wssd_make_combined_adjusted_tracks.py
wssd_pw_common.py		wssd_pw_common.py